Wall clock time and date at job start Mon Mar 30 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.72094 * 2 1 4 4 C 1.52803 * 109.65783 * 239.85748 * 2 1 3 5 5 N 1.46009 * 110.13886 * 190.17803 * 4 2 1 6 6 C 1.46504 * 118.53323 * 197.98173 * 5 4 2 7 7 C 1.52996 * 117.50225 * 351.50806 * 6 5 4 8 8 C 1.52995 * 60.00083 * 107.49117 * 7 6 5 9 9 C 1.33718 * 122.93142 * 17.70677 * 5 4 2 10 10 O 1.21278 * 118.62756 * 178.59089 * 9 5 4 11 11 C 1.50257 * 122.74550 * 358.56672 * 9 5 4 12 12 H 1.09000 * 109.38226 * 257.06498 * 11 9 5 13 13 C 1.50701 * 109.38461 * 137.38303 * 11 9 5 14 14 H 1.08001 * 119.99774 * 240.00081 * 13 11 9 15 15 C 1.37872 * 120.00327 * 59.99829 * 13 11 9 16 16 N 1.31523 * 119.99949 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00245 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47648 * 119.99711 * 17 15 13 20 20 H 1.48502 * 109.46809 * 239.99762 * 17 15 13 21 21 N 1.46903 * 109.98274 * 17.22505 * 11 9 5 22 22 H 1.09002 * 109.46733 * 299.62158 * 1 2 3 23 23 H 1.08996 * 109.47471 * 59.61760 * 1 2 3 24 24 H 1.08999 * 109.47565 * 179.62450 * 1 2 3 25 25 H 1.08991 * 109.47272 * 69.88165 * 4 2 1 26 26 H 1.08998 * 109.18177 * 310.28967 * 4 2 1 27 27 H 1.09008 * 115.56091 * 205.81715 * 6 5 4 28 28 H 1.09000 * 117.50047 * 214.98577 * 7 6 5 29 29 H 1.09007 * 117.49647 * 359.97438 * 7 6 5 30 30 H 1.09003 * 117.49453 * 252.51316 * 8 7 6 31 31 H 1.08996 * 117.51856 * 107.48591 * 8 7 6 32 32 H 0.97003 * 119.99962 * 180.02562 * 16 15 13 33 33 H 1.00902 * 110.99621 * 73.06350 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8977 1.0260 0.0000 4 6 2.0440 -0.7226 -1.2444 5 7 3.4837 -0.9419 -1.1396 6 6 4.2358 -1.2461 -2.3595 7 6 3.4348 -1.5106 -3.6359 8 6 4.2161 -0.2044 -3.4799 9 6 4.1472 -0.8721 0.0192 10 8 5.3396 -1.0937 0.0203 11 6 3.4773 -0.5302 1.3200 12 1 3.6991 0.5049 1.5799 13 6 3.9974 -1.4384 2.4043 14 1 3.3173 -2.0838 2.9404 15 6 5.3414 -1.4454 2.7121 16 7 6.1696 -0.6598 2.0589 17 14 5.9861 -2.5717 4.0557 18 1 4.8600 -3.3488 4.6327 19 1 6.9886 -3.5044 3.4811 20 1 6.6221 -1.7567 5.1217 21 7 2.0236 -0.7013 1.1962 22 1 -0.3633 0.5080 0.8934 23 1 -0.3634 0.5197 -0.8865 24 1 -0.3634 -1.0276 -0.0067 25 1 1.8334 -0.1197 -2.1276 26 1 1.5375 -1.6835 -1.3354 27 1 5.1555 -1.8133 -2.2158 28 1 3.8274 -2.2519 -4.3319 29 1 2.3481 -1.4587 -3.5680 30 1 3.6434 0.7072 -3.3095 31 1 5.1228 -0.0860 -4.0732 32 1 7.1152 -0.6650 2.2751 33 1 1.7755 -1.6790 1.1703 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219375845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:35 Heat of formation + Delta-G solvation = 19.327648 kcal Electronic energy + Delta-G solvation = -16215.522182 eV Core-core repulsion = 13663.988132 eV Total energy + Delta-G solvation = -2551.534051 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.64081 -36.58819 -35.97132 -32.96529 -31.51880 -30.57529 -26.09206 -25.87002 -23.38450 -22.20696 -21.12026 -20.66155 -18.21342 -16.65779 -16.20068 -15.64577 -14.84281 -14.31393 -13.99261 -13.85441 -13.61840 -13.02820 -12.70243 -12.18442 -11.92806 -11.63950 -11.45353 -11.32589 -11.03697 -10.80670 -10.78098 -10.50576 -10.33796 -10.15054 -9.86539 -9.30975 -8.85100 -8.22957 -7.62846 -7.22630 -5.86225 -3.96373 3.36057 3.43329 3.47018 3.73326 3.96553 4.35430 4.53257 4.99306 5.06266 5.18546 5.22247 5.31597 5.42629 5.60151 5.63731 5.73407 5.78395 5.92891 6.02848 6.06431 6.23544 6.28513 6.38945 6.44982 6.58242 7.12623 7.36846 7.60650 7.96889 8.13839 8.41845 8.61790 8.99753 9.64080 9.78436 11.14278 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028441 B = 0.010682 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.271254 B = 2620.519603 C = 3358.858987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.065 3.935 3 H 0.079 0.921 4 C 0.090 3.910 5 N -0.607 5.607 6 C 0.093 3.907 7 C -0.197 4.197 8 C -0.200 4.200 9 C 0.472 3.528 10 O -0.476 6.476 11 C 0.220 3.780 12 H 0.067 0.933 13 C -0.542 4.542 14 H 0.067 0.933 15 C 0.075 3.925 16 N -0.821 5.821 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.284 1.284 21 N -0.670 5.670 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.256 0.744 33 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 0.473 -8.592 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 H 0.097 0.903 4 C -0.035 4.035 5 N -0.346 5.346 6 C -0.013 4.013 7 C -0.235 4.235 8 C -0.239 4.239 9 C 0.259 3.741 10 O -0.343 6.343 11 C 0.108 3.892 12 H 0.084 0.916 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.135 4.135 16 N -0.454 5.454 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 N -0.301 5.301 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.683 0.949 -8.068 11.181 hybrid contribution 0.724 -1.138 -0.421 1.413 sum -6.959 -0.189 -8.488 10.978 Atomic orbital electron populations 1.21676 0.94083 1.01806 1.01690 1.21829 0.95292 0.98924 0.88556 0.90266 1.22019 0.82184 0.99533 0.99809 1.47916 1.06789 1.73285 1.06561 1.21483 0.97840 1.00703 0.81278 1.23272 0.99049 1.00035 1.01112 1.23277 1.02430 0.93732 1.04509 1.23377 0.89132 0.76843 0.84746 1.90718 1.14692 1.44377 1.84528 1.19319 0.80915 0.99829 0.89087 0.91598 1.20640 0.93197 1.25557 1.18607 0.91441 1.24952 0.96873 0.95757 0.95898 1.70238 1.03166 1.35709 1.36239 0.86481 0.78868 0.80654 0.81581 1.19719 1.21203 1.21022 1.61161 1.15561 1.17237 1.36097 0.91492 0.92842 0.92801 0.92358 0.93197 0.85671 0.88734 0.88838 0.89181 0.88830 0.93353 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.51 37.15 0.35 -1.34 16 2 C 0.07 1.08 3.08 -67.66 -0.21 0.87 16 3 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 4 C 0.09 1.46 4.67 -4.41 -0.02 1.44 16 5 N -0.61 -12.42 3.17 -167.11 -0.53 -12.95 16 6 C 0.09 1.70 6.09 -67.93 -0.41 1.29 16 7 C -0.20 -2.72 9.71 -26.74 -0.26 -2.98 16 8 C -0.20 -3.01 10.07 -26.73 -0.27 -3.28 16 9 C 0.47 12.02 7.11 -11.67 -0.08 11.94 16 10 O -0.48 -14.06 12.41 5.56 0.07 -13.99 16 11 C 0.22 5.59 2.73 -70.23 -0.19 5.40 16 12 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 13 C -0.54 -15.17 8.63 -34.44 -0.30 -15.47 16 14 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.07 2.15 4.97 -17.82 -0.09 2.06 16 16 N -0.82 -24.88 10.29 55.43 0.57 -24.31 16 17 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 N -0.67 -13.71 6.30 -102.31 -0.64 -14.36 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.83 6.66 -51.93 -0.35 0.48 16 26 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 27 H 0.13 2.56 7.48 -51.92 -0.39 2.17 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.20 6.61 -51.93 -0.34 0.86 16 30 H 0.09 1.34 7.91 -51.93 -0.41 0.93 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.34 6.72 8.56 -39.29 -0.34 6.39 16 LS Contribution 267.99 15.07 4.04 4.04 Total: -1.00 -31.67 267.99 -7.74 -39.42 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.75 Total: 5.18 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.48 Total: -0.08 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.60 Total: -51.61 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.07 Total: -13.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.67 -7.74 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.745 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds