Wall clock time and date at job start Mon Mar 30 2020 03:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.72094 * 2 1 4 4 C 1.52803 * 109.65783 * 239.85748 * 2 1 3 5 5 N 1.46009 * 110.13886 * 190.17803 * 4 2 1 6 6 C 1.46504 * 118.53323 * 197.98173 * 5 4 2 7 7 C 1.52996 * 117.50225 * 351.50806 * 6 5 4 8 8 C 1.52995 * 60.00083 * 107.49117 * 7 6 5 9 9 C 1.33718 * 122.93142 * 17.70677 * 5 4 2 10 10 O 1.21278 * 118.62756 * 178.59089 * 9 5 4 11 11 C 1.50257 * 122.74550 * 358.56672 * 9 5 4 12 12 H 1.09000 * 109.38226 * 257.06498 * 11 9 5 13 13 C 1.50701 * 109.38461 * 137.38303 * 11 9 5 14 14 H 1.08001 * 119.99774 * 240.00081 * 13 11 9 15 15 C 1.37872 * 120.00327 * 59.99829 * 13 11 9 16 16 N 1.31523 * 119.99949 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00245 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47648 * 119.99711 * 17 15 13 20 20 H 1.48502 * 109.46809 * 239.99762 * 17 15 13 21 21 N 1.46903 * 109.98274 * 17.22505 * 11 9 5 22 22 H 1.09002 * 109.46733 * 299.62158 * 1 2 3 23 23 H 1.08996 * 109.47471 * 59.61760 * 1 2 3 24 24 H 1.08999 * 109.47565 * 179.62450 * 1 2 3 25 25 H 1.08991 * 109.47272 * 69.88165 * 4 2 1 26 26 H 1.08998 * 109.18177 * 310.28967 * 4 2 1 27 27 H 1.09008 * 115.56091 * 205.81715 * 6 5 4 28 28 H 1.09000 * 117.50047 * 214.98577 * 7 6 5 29 29 H 1.09007 * 117.49647 * 359.97438 * 7 6 5 30 30 H 1.09003 * 117.49453 * 252.51316 * 8 7 6 31 31 H 1.08996 * 117.51856 * 107.48591 * 8 7 6 32 32 H 0.97003 * 119.99962 * 180.02562 * 16 15 13 33 33 H 1.00902 * 110.99621 * 73.06350 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8977 1.0260 0.0000 4 6 2.0440 -0.7226 -1.2444 5 7 3.4837 -0.9419 -1.1396 6 6 4.2358 -1.2461 -2.3595 7 6 3.4348 -1.5106 -3.6359 8 6 4.2161 -0.2044 -3.4799 9 6 4.1472 -0.8721 0.0192 10 8 5.3396 -1.0937 0.0203 11 6 3.4773 -0.5302 1.3200 12 1 3.6991 0.5049 1.5799 13 6 3.9974 -1.4384 2.4043 14 1 3.3173 -2.0838 2.9404 15 6 5.3414 -1.4454 2.7121 16 7 6.1696 -0.6598 2.0589 17 14 5.9861 -2.5717 4.0557 18 1 4.8600 -3.3488 4.6327 19 1 6.9886 -3.5044 3.4811 20 1 6.6221 -1.7567 5.1217 21 7 2.0236 -0.7013 1.1962 22 1 -0.3633 0.5080 0.8934 23 1 -0.3634 0.5197 -0.8865 24 1 -0.3634 -1.0276 -0.0067 25 1 1.8334 -0.1197 -2.1276 26 1 1.5375 -1.6835 -1.3354 27 1 5.1555 -1.8133 -2.2158 28 1 3.8274 -2.2519 -4.3319 29 1 2.3481 -1.4587 -3.5680 30 1 3.6434 0.7072 -3.3095 31 1 5.1228 -0.0860 -4.0732 32 1 7.1152 -0.6650 2.2751 33 1 1.7755 -1.6790 1.1703 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219375845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:35 Heat of formation + Delta-G solvation = -4.153348 kcal Electronic energy + Delta-G solvation = -16216.540395 eV Core-core repulsion = 13663.988132 eV Total energy + Delta-G solvation = -2552.552263 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30053 -38.08593 -37.67108 -34.91693 -33.17940 -32.24897 -27.94951 -27.22624 -25.26276 -23.41816 -22.72454 -22.07209 -19.80424 -18.69140 -17.76602 -17.32654 -16.56211 -16.02787 -15.66881 -15.38436 -15.26295 -14.65383 -14.13532 -13.83180 -13.35038 -13.22295 -13.07638 -12.77286 -12.52922 -12.41283 -12.36945 -12.04078 -11.84487 -11.67118 -11.45143 -11.31186 -10.81552 -10.35233 -9.22338 -8.95598 -8.02629 -6.18953 1.39475 1.41029 1.53270 2.17123 2.19868 2.46689 2.98553 3.26157 3.48246 3.76482 3.86105 3.99897 4.07932 4.24190 4.40523 4.49705 4.57898 4.68696 4.76474 4.91135 4.96505 5.06452 5.17368 5.19076 5.20018 5.40009 5.61393 5.84514 5.90928 6.30786 6.61487 6.73486 6.98535 7.45943 7.88932 8.97548 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028441 B = 0.010682 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.271254 B = 2620.519603 C = 3358.858987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.061 3.939 3 H 0.064 0.936 4 C 0.087 3.913 5 N -0.603 5.603 6 C 0.041 3.959 7 C -0.153 4.153 8 C -0.188 4.188 9 C 0.466 3.534 10 O -0.531 6.531 11 C 0.222 3.778 12 H 0.028 0.972 13 C -0.557 4.557 14 H 0.068 0.932 15 C 0.020 3.980 16 N -0.856 5.856 17 Si 0.962 3.038 18 H -0.259 1.259 19 H -0.291 1.291 20 H -0.276 1.276 21 N -0.669 5.669 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.251 0.749 33 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.846 -0.110 -10.222 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.049 4.049 3 H 0.082 0.918 4 C -0.036 4.036 5 N -0.339 5.339 6 C -0.064 4.064 7 C -0.190 4.190 8 C -0.227 4.227 9 C 0.254 3.746 10 O -0.403 6.403 11 C 0.109 3.891 12 H 0.045 0.955 13 C -0.595 4.595 14 H 0.086 0.914 15 C -0.186 4.186 16 N -0.490 5.490 17 Si 0.788 3.212 18 H -0.183 1.183 19 H -0.217 1.217 20 H -0.202 1.202 21 N -0.300 5.300 22 H 0.082 0.918 23 H 0.103 0.897 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.060 0.940 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.157 0.371 -9.738 14.076 hybrid contribution 1.382 -0.912 -0.016 1.656 sum -8.775 -0.541 -9.754 13.131 Atomic orbital electron populations 1.21614 0.90237 1.03089 1.03137 1.22023 0.98123 0.97571 0.87196 0.91753 1.22277 0.79431 1.01137 1.00800 1.47596 1.08581 1.71795 1.05968 1.21531 0.98527 1.04381 0.82008 1.23397 0.99779 0.99107 0.96766 1.23344 1.03394 0.94182 1.01783 1.23056 0.88569 0.76715 0.86308 1.90679 1.16774 1.47058 1.85752 1.18953 0.83897 0.97059 0.89156 0.95456 1.21004 0.93431 1.25656 1.19418 0.91409 1.25827 0.97350 0.97271 0.98115 1.70433 1.02966 1.37584 1.37993 0.85455 0.78274 0.78688 0.78824 1.18300 1.21713 1.20177 1.61047 1.12301 1.17724 1.38896 0.91812 0.89670 0.91579 0.88994 0.91119 0.89134 0.86502 0.86673 0.88615 0.87748 0.93965 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.51 71.98 0.68 -1.95 16 2 C 0.06 1.92 3.08 44.79 0.14 2.06 16 3 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 4 C 0.09 2.57 4.67 86.41 0.40 2.97 16 5 N -0.60 -24.41 3.17 -801.60 -2.54 -26.95 16 6 C 0.04 1.46 6.09 44.99 0.27 1.73 16 7 C -0.15 -3.62 9.71 30.59 0.30 -3.32 16 8 C -0.19 -5.17 10.07 30.59 0.31 -4.86 16 9 C 0.47 24.63 7.11 87.68 0.62 25.25 16 10 O -0.53 -33.06 12.41 -3.02 -0.04 -33.10 16 11 C 0.22 11.71 2.73 43.28 0.12 11.83 16 12 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 13 C -0.56 -32.18 8.63 25.60 0.22 -31.96 16 14 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 15 C 0.02 1.20 4.97 84.65 0.42 1.62 16 16 N -0.86 -54.43 10.29 21.45 0.22 -54.20 16 17 Si 0.96 46.54 29.54 68.60 2.03 48.57 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 N -0.67 -27.31 6.30 -477.61 -3.01 -30.32 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.09 2.15 6.66 -2.39 -0.02 2.14 16 26 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 27 H 0.09 3.86 7.48 -2.38 -0.02 3.85 16 28 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.12 2.27 6.61 -2.38 -0.02 2.26 16 30 H 0.10 2.54 7.91 -2.39 -0.02 2.52 16 31 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.34 13.34 8.56 -89.69 -0.77 12.57 16 Total: -1.00 -73.60 267.99 0.49 -73.11 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.34 Total: 19.51 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 3.49 Total: 3.38 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -5.33 Total: -111.47 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.04 Total: -33.10 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -73.60 0.49 -73.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.960 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds