Wall clock time and date at job start Mon Mar 30 2020 03:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.59814 * 2 1 4 4 C 1.52998 * 109.59017 * 120.47470 * 2 1 3 5 5 N 1.46013 * 110.03950 * 170.06716 * 4 2 1 6 6 C 1.46493 * 118.53173 * 162.12754 * 5 4 2 7 7 C 1.53001 * 117.50310 * 7.49822 * 6 5 4 8 8 C 1.53005 * 117.49857 * 298.84019 * 6 5 4 9 9 C 1.33708 * 122.92756 * 341.84163 * 5 4 2 10 10 O 1.21287 * 118.62096 * 181.68731 * 9 5 4 11 11 C 1.50256 * 122.75654 * 1.66609 * 9 5 4 12 12 H 1.08996 * 109.38827 * 222.67001 * 11 9 5 13 13 C 1.50700 * 109.38845 * 102.97213 * 11 9 5 14 14 H 1.07998 * 120.00000 * 240.00336 * 13 11 9 15 15 C 1.37872 * 119.99442 * 60.00452 * 13 11 9 16 16 N 1.31518 * 120.00539 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99905 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47353 * 89.99869 * 17 15 13 19 19 H 1.48503 * 109.46901 * 210.00109 * 17 15 13 20 20 H 1.48499 * 109.46616 * 329.99774 * 17 15 13 21 21 N 1.46910 * 109.97447 * 342.81827 * 11 9 5 22 22 H 1.09001 * 109.47052 * 180.29516 * 1 2 3 23 23 H 1.08998 * 109.47564 * 300.29996 * 1 2 3 24 24 H 1.09008 * 109.46895 * 60.29840 * 1 2 3 25 25 H 1.08997 * 109.36836 * 49.88953 * 4 2 1 26 26 H 1.08997 * 109.37441 * 290.24048 * 4 2 1 27 27 H 1.08998 * 115.55080 * 153.17295 * 6 5 4 28 28 H 1.08999 * 117.49650 * 0.02562 * 7 6 5 29 29 H 1.09002 * 117.50319 * 145.01765 * 7 6 5 30 30 H 1.08998 * 117.49752 * 214.98429 * 8 6 5 31 31 H 1.09000 * 117.49933 * 359.97438 * 8 6 5 32 32 H 0.96999 * 119.99828 * 179.97438 * 16 15 13 33 33 H 1.00898 * 111.00265 * 286.92854 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0429 -0.7310 1.2423 5 7 3.4837 -0.9443 1.1381 6 6 4.2346 -1.2573 2.3564 7 6 3.4330 -1.5137 3.6342 8 6 4.2289 -0.2156 3.4770 9 6 4.1472 -0.8720 -0.0205 10 8 5.3396 -1.0936 -0.0219 11 6 3.4774 -0.5283 -1.3209 12 1 3.8535 -1.1841 -2.1060 13 6 3.7837 0.9033 -1.6783 14 1 2.9797 1.6152 -1.7928 15 6 5.0905 1.3041 -1.8591 16 7 6.0696 0.4373 -1.7192 17 14 5.4704 3.0789 -2.3014 18 1 5.6611 3.8689 -1.0586 19 1 6.7106 3.1312 -3.1165 20 1 4.3414 3.6472 -3.0808 21 7 2.0236 -0.6996 -1.1973 22 1 -0.3633 -1.0277 0.0053 23 1 -0.3634 0.5185 0.8872 24 1 -0.3633 0.5092 -0.8927 25 1 1.5400 -1.6942 1.3284 26 1 1.8290 -0.1328 2.1280 27 1 5.1475 -1.8346 2.2106 28 1 2.3469 -1.4499 3.5682 29 1 3.8188 -2.2595 4.3292 30 1 5.1379 -0.1079 4.0687 31 1 3.6667 0.7028 3.3077 32 1 6.9889 0.7193 -1.8468 33 1 1.7755 -1.6773 -1.1728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219375928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:37 Heat of formation + Delta-G solvation = -11.125839 kcal Electronic energy + Delta-G solvation = -16341.675369 eV Core-core repulsion = 13788.820756 eV Total energy + Delta-G solvation = -2552.854613 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.32370 -38.06909 -37.70659 -34.90123 -33.26279 -32.19011 -28.11225 -27.21273 -25.16738 -23.50817 -22.83640 -21.96536 -20.16640 -18.16795 -17.72939 -17.27172 -16.67683 -16.21534 -15.80380 -15.38817 -15.21211 -14.69038 -14.12948 -13.77544 -13.53213 -13.18629 -12.84227 -12.79493 -12.55200 -12.47504 -12.39218 -12.01383 -11.74345 -11.70843 -11.43537 -11.32301 -10.84877 -10.61403 -9.22317 -8.94153 -8.04645 -6.27899 1.37275 1.38263 1.50025 2.13551 2.25120 2.41298 2.97304 3.18290 3.48813 3.78898 3.88504 3.99691 4.07196 4.33014 4.42841 4.51408 4.60986 4.68559 4.80926 4.90306 4.96939 5.05046 5.11899 5.16955 5.31500 5.42541 5.63531 5.85468 5.95686 6.17179 6.62847 6.79531 6.96466 7.38483 7.82348 8.90836 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024446 B = 0.012052 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.087907 B = 2322.664978 C = 2884.426371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.070 3.930 3 H 0.064 0.936 4 C 0.089 3.911 5 N -0.598 5.598 6 C 0.043 3.957 7 C -0.146 4.146 8 C -0.198 4.198 9 C 0.477 3.523 10 O -0.553 6.553 11 C 0.217 3.783 12 H 0.029 0.971 13 C -0.530 4.530 14 H 0.069 0.931 15 C 0.006 3.994 16 N -0.868 5.868 17 Si 0.959 3.041 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.258 1.258 21 N -0.668 5.668 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.254 0.746 33 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -1.985 9.742 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.041 4.041 3 H 0.082 0.918 4 C -0.035 4.035 5 N -0.333 5.333 6 C -0.062 4.062 7 C -0.183 4.183 8 C -0.237 4.237 9 C 0.265 3.735 10 O -0.427 6.427 11 C 0.104 3.896 12 H 0.047 0.953 13 C -0.568 4.568 14 H 0.087 0.913 15 C -0.198 4.198 16 N -0.502 5.502 17 Si 0.784 3.216 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.182 1.182 21 N -0.298 5.298 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.332 -1.627 9.219 13.942 hybrid contribution 1.357 0.312 0.307 1.426 sum -8.975 -1.315 9.526 13.154 Atomic orbital electron populations 1.21628 0.90555 1.03117 1.02844 1.21930 0.97438 0.98024 0.86668 0.91814 1.22322 0.79224 1.01157 1.00771 1.47291 1.08521 1.71416 1.06061 1.21561 0.98704 1.03943 0.81959 1.23416 0.99666 0.98760 0.96499 1.23341 1.03437 0.94380 1.02504 1.22595 0.88412 0.75178 0.87331 1.90611 1.16976 1.48138 1.86964 1.19058 0.83969 0.97868 0.88661 0.95348 1.20942 0.92275 0.94208 1.49365 0.91301 1.26013 0.96553 1.01856 0.95363 1.70498 0.99246 1.35107 1.45379 0.85543 0.77984 0.79958 0.78102 1.20705 1.20994 1.18185 1.60911 1.12394 1.16485 1.40044 0.91108 0.90130 0.92120 0.90284 0.89685 0.88670 0.86605 0.86053 0.87913 0.89317 0.93679 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 9.51 71.98 0.68 -2.14 16 2 C 0.07 2.33 2.98 44.86 0.13 2.46 16 3 H 0.06 2.56 6.88 -2.39 -0.02 2.54 16 4 C 0.09 2.70 4.68 86.47 0.40 3.11 16 5 N -0.60 -24.54 3.16 -801.23 -2.54 -27.08 16 6 C 0.04 1.58 6.08 44.99 0.27 1.85 16 7 C -0.15 -3.48 9.71 30.62 0.30 -3.18 16 8 C -0.20 -5.87 10.10 30.62 0.31 -5.57 16 9 C 0.48 25.15 6.61 87.68 0.58 25.73 16 10 O -0.55 -34.31 13.67 -3.05 -0.04 -34.35 16 11 C 0.22 11.37 2.96 43.28 0.13 11.50 16 12 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 13 C -0.53 -30.02 7.83 25.60 0.20 -29.82 16 14 H 0.07 3.81 7.39 -2.91 -0.02 3.79 16 15 C 0.01 0.37 5.30 84.65 0.45 0.82 16 16 N -0.87 -55.02 10.52 21.45 0.23 -54.79 16 17 Si 0.96 45.72 29.54 68.60 2.03 47.74 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 21 N -0.67 -26.83 6.31 -477.25 -3.01 -29.84 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.08 1.99 8.11 -2.39 -0.02 1.97 16 26 H 0.08 2.18 6.70 -2.39 -0.02 2.17 16 27 H 0.10 3.99 7.50 -2.39 -0.02 3.97 16 28 H 0.12 2.31 6.58 -2.39 -0.02 2.29 16 29 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.09 2.69 7.97 -2.39 -0.02 2.68 16 32 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.33 11.75 8.78 -89.70 -0.79 10.96 16 Total: -1.00 -73.85 267.34 0.44 -73.41 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.32 Total: 20.15 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 3.46 Total: 4.76 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -5.32 Total: -111.71 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.04 Total: -34.35 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.85 0.44 -73.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.283 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds