Wall clock time and date at job start Mon Mar 30 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.59371 * 2 1 4 4 C 1.52980 * 109.59272 * 239.54470 * 2 1 3 5 5 N 1.46014 * 110.04775 * 290.49926 * 4 2 1 6 6 C 1.46496 * 118.53435 * 161.83717 * 5 4 2 7 7 C 1.53001 * 117.50101 * 8.56712 * 6 5 4 8 8 C 1.53004 * 117.49710 * 299.90746 * 6 5 4 9 9 C 1.33713 * 122.92670 * 341.87902 * 5 4 2 10 10 O 1.21274 * 118.62231 * 181.66673 * 9 5 4 11 11 C 1.50252 * 122.75069 * 1.64423 * 9 5 4 12 12 H 1.09000 * 109.38920 * 102.97616 * 11 9 5 13 13 C 1.50711 * 109.30258 * 222.71766 * 11 9 5 14 14 H 1.07990 * 119.99983 * 120.46187 * 13 11 9 15 15 C 1.37881 * 119.99580 * 300.46916 * 13 11 9 16 16 N 1.31510 * 119.99829 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99903 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47136 * 89.99603 * 17 15 13 19 19 H 1.48496 * 109.46903 * 209.99806 * 17 15 13 20 20 H 1.48505 * 109.46727 * 329.99586 * 17 15 13 21 21 N 1.46900 * 109.98227 * 342.81783 * 11 9 5 22 22 H 1.09007 * 109.47124 * 299.69713 * 1 2 3 23 23 H 1.09001 * 109.47341 * 59.69906 * 1 2 3 24 24 H 1.09004 * 109.47269 * 179.70197 * 1 2 3 25 25 H 1.09000 * 109.37736 * 50.69579 * 4 2 1 26 26 H 1.09006 * 109.37680 * 170.34450 * 4 2 1 27 27 H 1.09002 * 115.55230 * 154.24069 * 6 5 4 28 28 H 1.09002 * 117.50113 * 0.02562 * 7 6 5 29 29 H 1.09005 * 117.49838 * 145.02155 * 7 6 5 30 30 H 1.09001 * 117.49849 * 214.97885 * 8 6 5 31 31 H 1.08998 * 117.49999 * 0.02562 * 8 6 5 32 32 H 0.97008 * 120.00082 * 180.02562 * 16 15 13 33 33 H 1.00896 * 111.00030 * 173.66708 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0430 -0.7305 -1.2424 5 7 1.7583 -2.1587 -1.1365 6 6 1.7913 -2.9711 -2.3551 7 6 2.3181 -2.3103 -3.6306 8 6 0.8223 -2.5984 -3.4790 9 6 1.4679 -2.7579 0.0231 10 8 1.2743 -3.9551 0.0258 11 6 1.3720 -2.0102 1.3228 12 1 0.3229 -1.8693 1.5826 13 6 2.0532 -2.8057 2.4066 14 1 2.8858 -2.3798 2.9467 15 6 1.6135 -4.0771 2.7084 16 7 0.5993 -4.5955 2.0508 17 14 2.4573 -5.0628 4.0521 18 1 1.7952 -4.7932 5.3537 19 1 2.3609 -6.5111 3.7383 20 1 3.8865 -4.6677 4.1325 21 7 2.0236 -0.6996 1.1972 22 1 -0.3634 0.5092 0.8927 23 1 -0.3634 0.5185 -0.8873 24 1 -0.3634 -1.0277 -0.0053 25 1 1.5506 -0.3280 -2.1276 26 1 3.1193 -0.5822 -1.3305 27 1 2.0099 -4.0289 -2.2092 28 1 2.6404 -1.2713 -3.5630 29 1 2.8829 -2.9336 -4.3240 30 1 0.4038 -3.4111 -4.0728 31 1 0.1606 -1.7486 -3.3119 32 1 0.2897 -5.4899 2.2634 33 1 1.8793 -0.1432 2.0264 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219375999.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:39 Heat of formation + Delta-G solvation = 25.376073 kcal Electronic energy + Delta-G solvation = -16414.131565 eV Core-core repulsion = 13862.859793 eV Total energy + Delta-G solvation = -2551.271772 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64201 -36.60043 -35.92105 -32.94133 -31.48137 -29.88926 -26.53298 -26.00498 -23.49015 -22.16512 -21.32372 -20.38483 -17.09153 -16.80317 -16.37367 -15.30663 -14.84587 -14.57692 -14.15833 -13.95726 -13.62097 -12.77174 -12.59512 -12.40282 -12.00166 -11.58209 -11.37394 -11.18863 -11.05113 -10.76100 -10.62267 -10.47320 -10.30317 -10.08306 -9.75973 -9.40090 -8.42716 -7.95786 -7.55741 -7.44312 -5.82408 -3.91665 3.37690 3.44810 3.48599 3.86530 4.02926 4.41434 4.58258 5.01206 5.15003 5.22009 5.32210 5.36036 5.46528 5.55630 5.68492 5.80555 5.83929 6.02058 6.08801 6.14575 6.29643 6.33105 6.37426 6.57894 6.69537 7.14276 7.33831 7.68105 7.99286 8.19657 8.41722 8.71369 9.04473 9.67781 9.87754 11.17308 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.010694 C = 0.008952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.800974 B = 2617.759268 C = 3127.102304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.064 3.936 3 H 0.084 0.916 4 C 0.134 3.866 5 N -0.601 5.601 6 C 0.095 3.905 7 C -0.196 4.196 8 C -0.202 4.202 9 C 0.511 3.489 10 O -0.480 6.480 11 C 0.217 3.783 12 H 0.029 0.971 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.073 3.927 16 N -0.821 5.821 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 N -0.674 5.674 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.256 0.744 33 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 8.211 -7.865 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.047 4.047 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.338 5.338 6 C -0.011 4.011 7 C -0.234 4.234 8 C -0.241 4.241 9 C 0.300 3.700 10 O -0.348 6.348 11 C 0.106 3.894 12 H 0.046 0.954 13 C -0.576 4.576 14 H 0.085 0.915 15 C -0.137 4.137 16 N -0.454 5.454 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.306 5.306 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.802 7.067 -8.110 10.787 hybrid contribution -0.488 -0.202 0.697 0.874 sum 0.315 6.865 -7.413 10.108 Atomic orbital electron populations 1.22523 0.97822 1.02904 1.01091 1.21848 0.92723 0.97476 0.92656 0.89819 1.21224 0.99430 0.81663 0.96729 1.47733 1.72528 1.07235 1.06336 1.21465 1.01580 0.96823 0.81252 1.23287 0.96962 1.02004 1.01190 1.23300 0.92474 1.03710 1.04615 1.21968 0.75262 0.89288 0.83512 1.90733 1.45403 1.14319 1.84297 1.19187 0.94812 0.84625 0.90750 0.95363 1.20611 1.18422 1.00545 1.17995 0.91497 1.24972 0.95249 0.97477 0.95971 1.70244 1.23744 1.15346 1.36073 0.86546 0.80042 0.79300 0.81720 1.20785 1.21346 1.19889 1.61135 1.60257 1.05197 1.03991 0.92781 0.93065 0.91650 0.92482 0.92588 0.85657 0.88768 0.88749 0.88893 0.89227 0.93375 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.57 37.16 0.32 -2.66 16 2 C 0.06 1.06 3.73 -67.57 -0.25 0.81 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.13 2.25 4.81 -4.31 -0.02 2.23 16 5 N -0.60 -12.55 3.05 -167.00 -0.51 -13.06 16 6 C 0.09 1.76 6.10 -67.93 -0.41 1.35 16 7 C -0.20 -2.75 9.71 -26.69 -0.26 -3.01 16 8 C -0.20 -3.03 10.08 -26.69 -0.27 -3.30 16 9 C 0.51 13.26 6.26 -11.68 -0.07 13.19 16 10 O -0.48 -14.34 12.34 5.56 0.07 -14.27 16 11 C 0.22 5.52 2.07 -70.23 -0.15 5.37 16 12 H 0.03 0.79 6.78 -51.93 -0.35 0.43 16 13 C -0.54 -15.26 8.80 -34.43 -0.30 -15.56 16 14 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 15 C 0.07 2.10 4.97 -17.82 -0.09 2.02 16 16 N -0.82 -25.01 10.23 55.43 0.57 -24.45 16 17 Si 0.90 22.26 29.54 -169.99 -5.02 17.23 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 N -0.67 -13.81 6.38 -102.22 -0.65 -14.46 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.30 5.76 -51.93 -0.30 1.00 16 25 H 0.06 0.81 6.64 -51.93 -0.34 0.47 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.13 2.59 7.48 -51.93 -0.39 2.20 16 28 H 0.09 1.22 6.61 -51.93 -0.34 0.88 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.33 7.91 -51.93 -0.41 0.91 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.34 6.33 8.90 -39.29 -0.35 5.98 16 LS Contribution 263.00 15.07 3.96 3.96 Total: -1.00 -32.47 263.00 -7.66 -40.13 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.57 Total: 4.48 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.51 Total: 0.42 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.59 Total: -51.96 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.07 Total: -14.27 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.47 -7.66 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375999.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.507 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds