Wall clock time and date at job start Mon Mar 30 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.59371 * 2 1 4 4 C 1.52980 * 109.59272 * 239.54470 * 2 1 3 5 5 N 1.46014 * 110.04775 * 290.49926 * 4 2 1 6 6 C 1.46496 * 118.53435 * 161.83717 * 5 4 2 7 7 C 1.53001 * 117.50101 * 8.56712 * 6 5 4 8 8 C 1.53004 * 117.49710 * 299.90746 * 6 5 4 9 9 C 1.33713 * 122.92670 * 341.87902 * 5 4 2 10 10 O 1.21274 * 118.62231 * 181.66673 * 9 5 4 11 11 C 1.50252 * 122.75069 * 1.64423 * 9 5 4 12 12 H 1.09000 * 109.38920 * 102.97616 * 11 9 5 13 13 C 1.50711 * 109.30258 * 222.71766 * 11 9 5 14 14 H 1.07990 * 119.99983 * 120.46187 * 13 11 9 15 15 C 1.37881 * 119.99580 * 300.46916 * 13 11 9 16 16 N 1.31510 * 119.99829 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99903 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47136 * 89.99603 * 17 15 13 19 19 H 1.48496 * 109.46903 * 209.99806 * 17 15 13 20 20 H 1.48505 * 109.46727 * 329.99586 * 17 15 13 21 21 N 1.46900 * 109.98227 * 342.81783 * 11 9 5 22 22 H 1.09007 * 109.47124 * 299.69713 * 1 2 3 23 23 H 1.09001 * 109.47341 * 59.69906 * 1 2 3 24 24 H 1.09004 * 109.47269 * 179.70197 * 1 2 3 25 25 H 1.09000 * 109.37736 * 50.69579 * 4 2 1 26 26 H 1.09006 * 109.37680 * 170.34450 * 4 2 1 27 27 H 1.09002 * 115.55230 * 154.24069 * 6 5 4 28 28 H 1.09002 * 117.50113 * 0.02562 * 7 6 5 29 29 H 1.09005 * 117.49838 * 145.02155 * 7 6 5 30 30 H 1.09001 * 117.49849 * 214.97885 * 8 6 5 31 31 H 1.08998 * 117.49999 * 0.02562 * 8 6 5 32 32 H 0.97008 * 120.00082 * 180.02562 * 16 15 13 33 33 H 1.00896 * 111.00030 * 173.66708 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0430 -0.7305 -1.2424 5 7 1.7583 -2.1587 -1.1365 6 6 1.7913 -2.9711 -2.3551 7 6 2.3181 -2.3103 -3.6306 8 6 0.8223 -2.5984 -3.4790 9 6 1.4679 -2.7579 0.0231 10 8 1.2743 -3.9551 0.0258 11 6 1.3720 -2.0102 1.3228 12 1 0.3229 -1.8693 1.5826 13 6 2.0532 -2.8057 2.4066 14 1 2.8858 -2.3798 2.9467 15 6 1.6135 -4.0771 2.7084 16 7 0.5993 -4.5955 2.0508 17 14 2.4573 -5.0628 4.0521 18 1 1.7952 -4.7932 5.3537 19 1 2.3609 -6.5111 3.7383 20 1 3.8865 -4.6677 4.1325 21 7 2.0236 -0.6996 1.1972 22 1 -0.3634 0.5092 0.8927 23 1 -0.3634 0.5185 -0.8873 24 1 -0.3634 -1.0277 -0.0053 25 1 1.5506 -0.3280 -2.1276 26 1 3.1193 -0.5822 -1.3305 27 1 2.0099 -4.0289 -2.2092 28 1 2.6404 -1.2713 -3.5630 29 1 2.8829 -2.9336 -4.3240 30 1 0.4038 -3.4111 -4.0728 31 1 0.1606 -1.7486 -3.3119 32 1 0.2897 -5.4899 2.2634 33 1 1.8793 -0.1432 2.0264 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219375999.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:39 Heat of formation + Delta-G solvation = 0.867674 kcal Electronic energy + Delta-G solvation = -16415.194329 eV Core-core repulsion = 13862.859793 eV Total energy + Delta-G solvation = -2552.334535 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.29512 -38.05861 -37.69241 -34.87822 -33.22737 -31.59176 -28.23002 -27.59745 -25.38464 -23.42390 -22.86900 -21.87016 -18.89023 -18.51696 -18.04038 -17.03859 -16.61809 -16.14867 -15.92466 -15.63324 -15.07190 -14.41577 -14.29561 -13.97027 -13.65872 -13.15530 -12.93419 -12.79873 -12.64098 -12.47923 -12.26551 -12.10338 -11.69771 -11.58381 -11.45287 -11.31005 -10.55610 -9.96926 -9.22210 -9.06434 -7.99760 -6.15344 1.38463 1.42164 1.51785 2.23458 2.33065 2.49201 3.04545 3.28074 3.50630 3.83634 3.90533 4.04187 4.15022 4.23750 4.39909 4.46801 4.56299 4.73276 4.78502 4.89847 4.97808 5.02833 5.05970 5.14702 5.22477 5.37248 5.61181 5.84741 6.01343 6.39280 6.64075 6.82077 7.04668 7.48391 7.98101 8.99009 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.010694 C = 0.008952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.800974 B = 2617.759268 C = 3127.102304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.061 3.939 3 H 0.130 0.870 4 C 0.125 3.875 5 N -0.596 5.596 6 C 0.040 3.960 7 C -0.154 4.154 8 C -0.186 4.186 9 C 0.503 3.497 10 O -0.537 6.537 11 C 0.222 3.778 12 H -0.001 1.001 13 C -0.556 4.556 14 H 0.064 0.936 15 C 0.018 3.982 16 N -0.855 5.855 17 Si 0.960 3.040 18 H -0.266 1.266 19 H -0.292 1.292 20 H -0.268 1.268 21 N -0.677 5.677 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.019 0.981 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.250 0.750 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 10.537 -9.370 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.049 4.049 3 H 0.148 0.852 4 C 0.002 3.998 5 N -0.332 5.332 6 C -0.065 4.065 7 C -0.192 4.192 8 C -0.225 4.225 9 C 0.292 3.708 10 O -0.409 6.409 11 C 0.110 3.890 12 H 0.016 0.984 13 C -0.594 4.594 14 H 0.082 0.918 15 C -0.187 4.187 16 N -0.489 5.489 17 Si 0.785 3.215 18 H -0.191 1.191 19 H -0.218 1.218 20 H -0.193 1.193 21 N -0.309 5.309 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.038 0.962 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.768 9.469 -9.650 13.635 hybrid contribution -0.778 -0.819 1.062 1.551 sum 0.990 8.650 -8.589 12.230 Atomic orbital electron populations 1.22432 0.97558 1.00476 1.03083 1.22133 0.92976 0.99178 0.90630 0.85213 1.21599 1.00638 0.79119 0.98397 1.47441 1.70874 1.09129 1.05745 1.21519 1.07204 0.95682 0.82064 1.23414 0.96080 1.02860 0.96827 1.23358 0.93463 1.04050 1.01625 1.21793 0.75187 0.88698 0.85141 1.90689 1.48191 1.16493 1.85560 1.18838 0.93090 0.86826 0.90266 0.98421 1.20999 1.18258 1.01130 1.19025 0.91799 1.25832 0.95930 0.98790 0.98166 1.70444 1.25438 1.15210 1.37761 0.85545 0.79212 0.77262 0.79448 1.19109 1.21806 1.19284 1.61009 1.59944 1.03930 1.06040 0.92119 0.89758 0.96195 0.88699 0.91479 0.89292 0.86609 0.86620 0.87820 0.88441 0.94055 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.36 8.57 71.98 0.62 -4.75 16 2 C 0.06 1.84 3.73 44.85 0.17 2.00 16 3 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 4 C 0.12 3.79 4.81 86.46 0.42 4.21 16 5 N -0.60 -24.66 3.05 -801.24 -2.44 -27.10 16 6 C 0.04 1.48 6.10 44.99 0.27 1.76 16 7 C -0.15 -3.73 9.71 30.62 0.30 -3.43 16 8 C -0.19 -5.12 10.08 30.62 0.31 -4.81 16 9 C 0.50 27.02 6.26 87.68 0.55 27.57 16 10 O -0.54 -33.93 12.34 -3.01 -0.04 -33.97 16 11 C 0.22 11.62 2.07 43.29 0.09 11.71 16 12 H 0.00 -0.08 6.78 -2.39 -0.02 -0.09 16 13 C -0.56 -32.53 8.80 25.60 0.23 -32.31 16 14 H 0.06 3.65 7.81 -2.92 -0.02 3.63 16 15 C 0.02 1.11 4.97 84.66 0.42 1.53 16 16 N -0.85 -54.69 10.23 21.45 0.22 -54.47 16 17 Si 0.96 47.00 29.54 68.60 2.03 49.03 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 21 N -0.68 -27.18 6.38 -477.30 -3.04 -30.22 16 22 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 24 H 0.02 0.77 5.76 -2.38 -0.01 0.76 16 25 H 0.10 2.20 6.64 -2.39 -0.02 2.19 16 26 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.09 3.87 7.48 -2.39 -0.02 3.85 16 28 H 0.12 2.34 6.61 -2.39 -0.02 2.33 16 29 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.10 2.54 7.91 -2.39 -0.02 2.52 16 32 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 33 H 0.35 12.66 8.90 -89.70 -0.80 11.86 16 Total: -1.00 -75.82 263.00 0.40 -75.42 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.31 Total: 17.83 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 3.36 Total: 3.49 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -5.27 Total: -111.80 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.04 Total: -33.97 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -75.82 0.40 -75.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219375999.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.285 kcal (2) G-P(sol) polarization free energy of solvation -75.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds