Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00192 * 2 1 4 4 N 1.46506 * 109.46760 * 125.00076 * 3 2 1 5 5 C 1.46008 * 118.53673 * 90.00176 * 4 3 2 6 6 C 1.52979 * 110.04504 * 198.18073 * 5 4 3 7 7 H 1.08998 * 109.71648 * 69.55284 * 6 5 4 8 8 C 1.52999 * 109.59608 * 189.93376 * 6 5 4 9 9 N 1.47188 * 108.73002 * 309.70828 * 6 5 4 10 10 C 1.46911 * 110.17328 * 68.99701 * 9 6 5 11 11 H 1.08998 * 109.38485 * 69.85822 * 10 9 6 12 12 C 1.50696 * 109.38625 * 189.54732 * 10 9 6 13 13 H 1.08006 * 120.00019 * 35.26635 * 12 10 9 14 14 C 1.37878 * 120.00109 * 215.26850 * 12 10 9 15 15 N 1.31515 * 120.00147 * 184.78228 * 14 12 10 16 16 Si 1.86796 * 119.99687 * 4.77647 * 14 12 10 17 17 H 1.48494 * 109.46990 * 85.37952 * 16 14 12 18 18 H 1.48510 * 109.46946 * 205.37350 * 16 14 12 19 19 H 1.48496 * 109.47343 * 325.37143 * 16 14 12 20 20 C 1.33719 * 118.53679 * 270.02050 * 4 3 2 21 21 O 1.21276 * 118.62343 * 358.29326 * 20 4 3 22 22 H 1.07998 * 120.00346 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99861 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99861 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47324 * 5.00197 * 3 2 1 26 26 H 1.08993 * 109.47328 * 244.99660 * 3 2 1 27 27 H 1.09004 * 109.37507 * 78.00346 * 5 4 3 28 28 H 1.08997 * 109.37702 * 318.36012 * 5 4 3 29 29 H 1.09000 * 109.47067 * 179.24376 * 8 6 5 30 30 H 1.09001 * 109.47296 * 299.23881 * 8 6 5 31 31 H 1.08995 * 109.46898 * 59.24471 * 8 6 5 32 32 H 1.00900 * 111.00001 * 192.35905 * 9 6 5 33 33 H 0.96995 * 119.99883 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1315 5 6 4.3466 0.8191 0.9344 6 6 4.9943 0.5150 2.2866 7 1 4.5067 -0.3468 2.7423 8 6 6.4818 0.2172 2.0877 9 7 4.8384 1.6893 3.1601 10 6 3.4271 1.8623 3.5295 11 1 3.1289 1.0604 4.2047 12 6 3.2504 3.1887 4.2226 13 1 3.8376 4.0413 3.9149 14 6 2.3390 3.3138 5.2497 15 7 2.1165 4.4913 5.7916 16 14 1.4204 1.8109 5.8713 17 1 2.2454 1.1126 6.8895 18 1 0.1344 2.2342 6.4818 19 1 1.1507 0.8913 4.7370 20 6 2.5659 1.8241 2.2988 21 8 1.4355 2.2580 2.3669 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9354 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4025 -0.9313 27 1 4.9426 1.5643 0.4075 28 1 4.3045 -0.0937 0.3402 29 1 6.9439 0.0140 3.0538 30 1 6.5949 -0.6527 1.4408 31 1 6.9662 1.0781 1.6271 32 1 5.4198 1.6092 3.9809 33 1 1.4757 4.5792 6.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219376159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = -2.660359 kcal Electronic energy + Delta-G solvation = -16052.566683 eV Core-core repulsion = 13500.079161 eV Total energy + Delta-G solvation = -2552.487522 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67336 -36.31246 -35.36140 -33.01174 -32.16628 -30.89111 -26.96691 -26.47546 -25.36819 -22.27319 -21.06419 -19.64697 -17.97531 -17.04432 -16.23235 -16.09913 -15.13806 -14.80755 -14.38302 -13.83575 -13.79894 -13.06981 -12.78017 -12.65210 -12.46581 -12.10570 -11.76594 -11.69368 -11.17289 -11.01702 -10.88055 -10.76380 -10.38841 -9.96464 -9.50412 -9.34842 -8.77041 -8.48884 -8.04772 -7.66544 -6.12007 -4.15312 2.40337 3.27251 3.38196 3.46192 3.73466 3.80467 4.43207 4.71199 5.03749 5.11533 5.19879 5.35947 5.38998 5.51122 5.54703 5.63634 5.84547 5.88950 5.99862 6.10767 6.20380 6.22999 6.32512 6.55411 6.75904 6.91600 7.00995 7.34390 7.69259 8.08645 8.26807 8.50791 8.97955 9.24681 9.51359 10.99732 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.012623 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.875056 B = 2217.697090 C = 3035.975320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.618 5.618 5 C 0.133 3.867 6 C 0.057 3.943 7 H 0.036 0.964 8 C -0.140 4.140 9 N -0.668 5.668 10 C 0.180 3.820 11 H 0.031 0.969 12 C -0.497 4.497 13 H 0.085 0.915 14 C 0.091 3.909 15 N -0.884 5.884 16 Si 0.878 3.122 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.518 3.482 21 O -0.534 6.534 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.345 0.655 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 -11.162 -9.737 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.189 4.189 3 C 0.011 3.989 4 N -0.353 5.353 5 C 0.009 3.991 6 C -0.054 4.054 7 H 0.054 0.946 8 C -0.198 4.198 9 N -0.303 5.303 10 C 0.069 3.931 11 H 0.048 0.952 12 C -0.534 4.534 13 H 0.103 0.897 14 C -0.115 4.115 15 N -0.520 5.520 16 Si 0.705 3.295 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.189 1.189 20 C 0.307 3.693 21 O -0.408 6.408 22 H 0.111 0.889 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.920 -10.329 -10.039 14.928 hybrid contribution -0.686 -1.569 0.938 1.952 sum 3.234 -11.898 -9.102 15.325 Atomic orbital electron populations 1.23824 0.95977 1.01707 0.99944 1.23285 0.96337 0.98835 1.00474 1.20456 0.93234 0.95821 0.89379 1.47820 1.12170 1.63897 1.11423 1.21361 0.82810 0.97976 0.96903 1.21830 0.96005 0.93175 0.94395 0.94604 1.21743 0.94552 1.01559 1.01945 1.61094 1.09457 1.37384 1.22345 1.19646 0.84153 0.99235 0.90108 0.95152 1.20457 1.23040 0.93854 1.16097 0.89666 1.24954 0.95005 0.95819 0.95681 1.69870 1.34237 1.22805 1.25074 0.86826 0.79875 0.83970 0.78788 1.20591 1.20997 1.18912 1.21718 0.88525 0.74826 0.84193 1.90562 1.20598 1.45760 1.83899 0.88895 0.88247 0.87959 0.89435 0.90783 0.91859 0.91994 0.92341 0.92483 0.91486 0.83587 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 14.32 29.02 0.42 -2.15 16 2 C -0.17 -2.55 9.84 -36.03 -0.35 -2.90 16 3 C 0.13 2.22 5.73 -5.19 -0.03 2.19 16 4 N -0.62 -11.93 2.81 -175.96 -0.49 -12.42 16 5 C 0.13 2.03 5.88 -4.32 -0.03 2.01 16 6 C 0.06 0.88 3.12 -67.57 -0.21 0.67 16 7 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 8 C -0.14 -1.61 9.37 37.16 0.35 -1.26 16 9 N -0.67 -13.25 6.22 -102.22 -0.64 -13.88 16 10 C 0.18 4.40 2.30 -70.23 -0.16 4.24 16 11 H 0.03 0.77 5.27 -51.93 -0.27 0.50 16 12 C -0.50 -14.37 8.74 -34.44 -0.30 -14.68 16 13 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 14 C 0.09 2.69 5.47 -17.82 -0.10 2.60 16 15 N -0.88 -27.53 13.96 55.43 0.77 -26.75 16 16 Si 0.88 22.82 26.53 -169.99 -4.51 18.31 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.26 -6.99 6.80 56.52 0.38 -6.61 16 20 C 0.52 12.68 7.11 -11.67 -0.08 12.59 16 21 O -0.53 -14.93 15.28 5.56 0.08 -14.84 16 22 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 23 H 0.10 1.50 7.84 -52.48 -0.41 1.09 16 24 H 0.10 1.37 8.06 -52.48 -0.42 0.95 16 25 H 0.09 1.64 6.86 -51.93 -0.36 1.28 16 26 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 27 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 28 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.35 6.37 8.71 -39.29 -0.34 6.03 16 33 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 275.61 15.07 4.15 4.15 Total: -1.00 -33.74 275.61 -5.88 -39.62 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.75 Total: 2.51 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.50 Total: 3.31 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.36 Total: -53.06 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.51 Total: 18.31 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.74 -5.88 -39.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.957 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds