Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00192 * 2 1 4 4 N 1.46506 * 109.46760 * 125.00076 * 3 2 1 5 5 C 1.46008 * 118.53673 * 90.00176 * 4 3 2 6 6 C 1.52979 * 110.04504 * 198.18073 * 5 4 3 7 7 H 1.08998 * 109.71648 * 69.55284 * 6 5 4 8 8 C 1.52999 * 109.59608 * 189.93376 * 6 5 4 9 9 N 1.47188 * 108.73002 * 309.70828 * 6 5 4 10 10 C 1.46911 * 110.17328 * 68.99701 * 9 6 5 11 11 H 1.08998 * 109.38485 * 69.85822 * 10 9 6 12 12 C 1.50696 * 109.38625 * 189.54732 * 10 9 6 13 13 H 1.08006 * 120.00019 * 35.26635 * 12 10 9 14 14 C 1.37878 * 120.00109 * 215.26850 * 12 10 9 15 15 N 1.31515 * 120.00147 * 184.78228 * 14 12 10 16 16 Si 1.86796 * 119.99687 * 4.77647 * 14 12 10 17 17 H 1.48494 * 109.46990 * 85.37952 * 16 14 12 18 18 H 1.48510 * 109.46946 * 205.37350 * 16 14 12 19 19 H 1.48496 * 109.47343 * 325.37143 * 16 14 12 20 20 C 1.33719 * 118.53679 * 270.02050 * 4 3 2 21 21 O 1.21276 * 118.62343 * 358.29326 * 20 4 3 22 22 H 1.07998 * 120.00346 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99861 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99861 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47324 * 5.00197 * 3 2 1 26 26 H 1.08993 * 109.47328 * 244.99660 * 3 2 1 27 27 H 1.09004 * 109.37507 * 78.00346 * 5 4 3 28 28 H 1.08997 * 109.37702 * 318.36012 * 5 4 3 29 29 H 1.09000 * 109.47067 * 179.24376 * 8 6 5 30 30 H 1.09001 * 109.47296 * 299.23881 * 8 6 5 31 31 H 1.08995 * 109.46898 * 59.24471 * 8 6 5 32 32 H 1.00900 * 111.00001 * 192.35905 * 9 6 5 33 33 H 0.96995 * 119.99883 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1315 5 6 4.3466 0.8191 0.9344 6 6 4.9943 0.5150 2.2866 7 1 4.5067 -0.3468 2.7423 8 6 6.4818 0.2172 2.0877 9 7 4.8384 1.6893 3.1601 10 6 3.4271 1.8623 3.5295 11 1 3.1289 1.0604 4.2047 12 6 3.2504 3.1887 4.2226 13 1 3.8376 4.0413 3.9149 14 6 2.3390 3.3138 5.2497 15 7 2.1165 4.4913 5.7916 16 14 1.4204 1.8109 5.8713 17 1 2.2454 1.1126 6.8895 18 1 0.1344 2.2342 6.4818 19 1 1.1507 0.8913 4.7370 20 6 2.5659 1.8241 2.2988 21 8 1.4355 2.2580 2.3669 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9354 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4025 -0.9313 27 1 4.9426 1.5643 0.4075 28 1 4.3045 -0.0937 0.3402 29 1 6.9439 0.0140 3.0538 30 1 6.5949 -0.6527 1.4408 31 1 6.9662 1.0781 1.6271 32 1 5.4198 1.6092 3.9809 33 1 1.4757 4.5792 6.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219376159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = -28.938200 kcal Electronic energy + Delta-G solvation = -16053.706176 eV Core-core repulsion = 13500.079161 eV Total energy + Delta-G solvation = -2553.627015 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33514 -37.91282 -36.88377 -34.89499 -33.69589 -32.52672 -28.60113 -27.89348 -26.83333 -24.11548 -22.46920 -20.84434 -19.55883 -19.17166 -17.82700 -17.72156 -16.70366 -16.43077 -15.85874 -15.57217 -15.24086 -14.70415 -14.61994 -14.06023 -13.97113 -13.40916 -13.30204 -12.93194 -12.82450 -12.50572 -12.26070 -12.22232 -11.94304 -11.92656 -11.63021 -10.94008 -10.66962 -10.28262 -9.58087 -9.27433 -8.39085 -6.45971 1.19650 1.23722 1.29210 1.38828 1.87153 2.26295 2.33007 3.01202 3.34754 3.82131 3.93047 4.03181 4.21400 4.29628 4.34927 4.42837 4.52602 4.66448 4.77447 4.87188 4.99325 5.01613 5.13152 5.24849 5.43667 5.58969 5.64553 5.83088 5.90131 6.38764 6.44268 6.63447 6.72303 7.23045 7.45477 8.77111 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.012623 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.875056 B = 2217.697090 C = 3035.975320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.176 4.176 3 C 0.129 3.871 4 N -0.611 5.611 5 C 0.123 3.877 6 C 0.052 3.948 7 H 0.038 0.962 8 C -0.130 4.130 9 N -0.676 5.676 10 C 0.183 3.817 11 H 0.028 0.972 12 C -0.500 4.500 13 H 0.041 0.959 14 C 0.035 3.965 15 N -0.933 5.933 16 Si 0.940 3.060 17 H -0.250 1.250 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.509 3.491 21 O -0.584 6.584 22 H 0.118 0.882 23 H 0.083 0.917 24 H 0.128 0.872 25 H 0.055 0.945 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.351 0.649 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 -14.387 -11.200 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.195 4.195 3 C 0.007 3.993 4 N -0.344 5.344 5 C 0.001 3.999 6 C -0.057 4.057 7 H 0.056 0.944 8 C -0.188 4.188 9 N -0.310 5.310 10 C 0.070 3.930 11 H 0.045 0.955 12 C -0.538 4.538 13 H 0.059 0.941 14 C -0.166 4.166 15 N -0.571 5.571 16 Si 0.765 3.235 17 H -0.174 1.174 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.297 3.703 21 O -0.463 6.463 22 H 0.136 0.864 23 H 0.102 0.898 24 H 0.146 0.854 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.170 0.830 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.219 -13.593 -11.545 18.582 hybrid contribution -0.978 -0.545 1.237 1.668 sum 4.241 -14.137 -10.309 18.003 Atomic orbital electron populations 1.24008 0.96243 1.02226 0.99289 1.23335 0.96441 0.98727 1.00966 1.20657 0.92984 0.95953 0.89672 1.47771 1.14135 1.62057 1.10404 1.21795 0.80447 1.00211 0.97462 1.22081 0.99107 0.91189 0.93373 0.94426 1.21699 0.91047 1.02882 1.03133 1.60910 1.06558 1.40498 1.23083 1.19372 0.86919 0.96467 0.90203 0.95508 1.20604 1.22041 0.94829 1.16324 0.94082 1.25765 0.96014 0.98573 0.96203 1.70002 1.35775 1.25009 1.26358 0.85856 0.78818 0.80418 0.78452 1.17409 1.21119 1.19661 1.21484 0.87770 0.75198 0.85807 1.90533 1.22441 1.48213 1.85079 0.86423 0.89844 0.85377 0.92620 0.86905 0.90791 0.87374 0.91727 0.89195 0.91532 0.82969 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.88 14.32 67.78 0.97 -3.91 16 2 C -0.18 -4.76 9.84 25.65 0.25 -4.51 16 3 C 0.13 4.02 5.73 85.63 0.49 4.51 16 4 N -0.61 -22.32 2.81 -829.60 -2.33 -24.65 16 5 C 0.12 3.24 5.88 86.47 0.51 3.74 16 6 C 0.05 1.45 3.12 44.85 0.14 1.59 16 7 H 0.04 1.06 8.08 -2.39 -0.02 1.04 16 8 C -0.13 -2.40 9.37 71.98 0.67 -1.72 16 9 N -0.68 -26.02 6.22 -477.30 -2.97 -28.98 16 10 C 0.18 8.96 2.30 43.28 0.10 9.06 16 11 H 0.03 1.35 5.27 -2.39 -0.01 1.34 16 12 C -0.50 -30.01 8.74 25.60 0.22 -29.79 16 13 H 0.04 2.75 8.06 -2.91 -0.02 2.72 16 14 C 0.03 2.13 5.47 84.65 0.46 2.59 16 15 N -0.93 -60.46 13.96 21.45 0.30 -60.16 16 16 Si 0.94 47.94 26.53 68.60 1.82 49.76 16 17 H -0.25 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.27 -14.07 6.80 99.48 0.68 -13.40 16 20 C 0.51 24.84 7.11 87.68 0.62 25.47 16 21 O -0.58 -33.42 15.28 -3.02 -0.05 -33.46 16 22 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 23 H 0.08 2.51 7.84 -2.91 -0.02 2.49 16 24 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 25 H 0.06 2.10 6.86 -2.39 -0.02 2.08 16 26 H 0.11 2.60 8.03 -2.39 -0.02 2.58 16 27 H 0.07 1.85 8.11 -2.38 -0.02 1.83 16 28 H 0.11 1.95 8.12 -2.39 -0.02 1.93 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.35 12.61 8.71 -89.69 -0.78 11.83 16 33 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -77.60 275.61 1.50 -76.10 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.28 Total: 14.37 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.45 Total: 7.03 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -5.00 Total: -113.80 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.05 Total: -33.46 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.82 Total: 49.76 kcal Total: -77.60 1.50 -76.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.159 kcal (2) G-P(sol) polarization free energy of solvation -77.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds