Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00436 * 2 1 4 4 N 1.46492 * 109.47442 * 124.99494 * 3 2 1 5 5 C 1.46003 * 118.54043 * 269.97960 * 4 3 2 6 6 C 1.52992 * 110.04486 * 161.86176 * 5 4 3 7 7 H 1.09003 * 109.61336 * 290.53690 * 6 5 4 8 8 C 1.52992 * 109.59193 * 170.06980 * 6 5 4 9 9 N 1.47189 * 108.71408 * 50.30578 * 6 5 4 10 10 C 1.46906 * 110.17626 * 290.98789 * 9 6 5 11 11 H 1.08999 * 109.38434 * 290.24337 * 10 9 6 12 12 C 1.50705 * 109.38539 * 170.45314 * 10 9 6 13 13 H 1.07998 * 120.00202 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99715 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00103 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99882 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47043 * 90.00104 * 16 14 12 18 18 H 1.48494 * 109.47371 * 210.00315 * 16 14 12 19 19 H 1.48504 * 109.47156 * 330.00298 * 16 14 12 20 20 C 1.33718 * 118.53520 * 90.00581 * 4 3 2 21 21 O 1.21287 * 118.62436 * 1.65822 * 20 4 3 22 22 H 1.08003 * 119.99906 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.99846 * 179.97438 * 1 2 3 24 24 H 1.08009 * 119.99883 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.46566 * 4.99296 * 3 2 1 26 26 H 1.09001 * 109.46549 * 245.00059 * 3 2 1 27 27 H 1.08996 * 109.37606 * 282.04205 * 5 4 3 28 28 H 1.09008 * 109.37450 * 41.80343 * 5 4 3 29 29 H 1.09001 * 109.47271 * 300.77759 * 8 6 5 30 30 H 1.09001 * 109.47456 * 60.77744 * 8 6 5 31 31 H 1.09003 * 109.47646 * 180.78175 * 8 6 5 32 32 H 1.00905 * 111.00285 * 167.62290 * 9 6 5 33 33 H 0.96993 * 120.00160 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5269 1.8706 2.4056 6 6 3.4469 1.4104 3.5381 7 1 3.3205 0.3400 3.7002 8 6 3.1024 2.1710 4.8201 9 7 4.8409 1.6906 3.1574 10 6 5.2514 0.8115 2.0544 11 1 5.3360 -0.2120 2.4197 12 6 6.5869 1.2652 1.5236 13 1 7.0802 2.1199 1.9622 14 6 7.1794 0.5883 0.4786 15 7 6.5789 -0.4528 -0.0552 16 14 8.8344 1.1511 -0.1798 17 1 9.9218 0.4595 0.5581 18 1 8.9300 0.8224 -1.6248 19 1 8.9671 2.6187 0.0039 20 6 4.2327 0.8625 0.9510 21 8 4.5476 0.4613 -0.1494 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3586 2.1316 0.0894 26 1 2.6213 1.4025 -0.9314 27 1 2.5267 2.9595 2.3596 28 1 1.5140 1.5167 2.5985 29 1 3.2237 3.2410 4.6515 30 1 2.0699 1.9621 5.1002 31 1 3.7681 1.8518 5.6221 32 1 5.4589 1.5906 3.9487 33 1 6.9955 -0.9288 -0.7905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219376392.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = 13.542991 kcal Electronic energy + Delta-G solvation = -16090.755045 eV Core-core repulsion = 13538.970153 eV Total energy + Delta-G solvation = -2551.784892 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.27341 -35.94350 -35.15734 -32.85711 -31.78666 -30.53990 -26.75029 -26.05435 -24.90241 -22.32180 -21.07976 -19.45261 -17.67531 -16.63116 -15.78216 -15.56270 -15.20829 -14.35634 -14.10246 -13.70596 -13.68536 -12.98179 -12.72979 -12.17139 -12.15628 -11.73647 -11.57936 -11.27089 -10.93239 -10.90231 -10.73652 -10.70029 -10.51239 -9.82922 -9.39340 -9.18469 -8.42100 -7.93475 -7.67198 -7.48246 -5.82049 -3.91283 2.51285 3.37915 3.44856 3.48604 4.10201 4.25093 4.55358 4.96956 5.24816 5.29002 5.36849 5.48621 5.55385 5.67005 5.76579 5.81091 6.00948 6.07724 6.18284 6.24801 6.34366 6.50274 6.59941 6.88350 6.96201 7.12600 7.38151 7.67938 7.99507 8.21249 8.42043 8.71434 9.04729 9.68109 9.88116 11.17715 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.010752 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.526009 B = 2603.488895 C = 3465.257157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C 0.135 3.865 4 N -0.627 5.627 5 C 0.137 3.863 6 C 0.062 3.938 7 H 0.035 0.965 8 C -0.140 4.140 9 N -0.674 5.674 10 C 0.217 3.783 11 H 0.022 0.978 12 C -0.536 4.536 13 H 0.067 0.933 14 C 0.072 3.928 15 N -0.821 5.821 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.507 3.493 21 O -0.480 6.480 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.337 0.663 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 2.761 5.705 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.162 4.162 3 C 0.012 3.988 4 N -0.366 5.366 5 C 0.012 3.988 6 C -0.048 4.048 7 H 0.053 0.947 8 C -0.198 4.198 9 N -0.308 5.308 10 C 0.106 3.894 11 H 0.040 0.960 12 C -0.574 4.574 13 H 0.085 0.915 14 C -0.137 4.137 15 N -0.454 5.454 16 Si 0.724 3.276 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.199 1.199 20 C 0.295 3.705 21 O -0.348 6.348 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.775 2.889 4.495 11.140 hybrid contribution 0.748 -0.643 0.044 0.987 sum -9.028 2.246 4.539 10.351 Atomic orbital electron populations 1.23684 0.95682 1.01194 1.04173 1.23531 0.95849 1.00116 0.96670 1.20343 0.91996 0.93606 0.92831 1.48201 1.12618 1.65549 1.10257 1.21231 0.96074 0.97892 0.83555 1.21740 0.91836 0.97332 0.93935 0.94689 1.21747 1.00724 1.01183 0.96130 1.61049 1.00531 1.57714 1.11490 1.19171 0.93068 0.91617 0.85511 0.96046 1.20579 1.01242 1.15919 1.19643 0.91475 1.24974 0.97363 0.95173 0.96170 1.70241 1.35290 1.17528 1.22368 0.86541 0.83928 0.79078 0.78016 1.20795 1.21366 1.19904 1.21960 0.80156 0.76089 0.92274 1.90738 1.75844 1.43582 1.24680 0.88946 0.88990 0.87461 0.91700 0.89327 0.92647 0.92607 0.91720 0.92606 0.92575 0.84534 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.82 14.32 29.02 0.42 -2.40 16 2 C -0.14 -2.39 9.84 -36.02 -0.35 -2.74 16 3 C 0.14 2.48 5.73 -5.20 -0.03 2.45 16 4 N -0.63 -13.12 2.81 -175.96 -0.49 -13.61 16 5 C 0.14 2.32 5.88 -4.31 -0.03 2.30 16 6 C 0.06 1.06 3.12 -67.56 -0.21 0.84 16 7 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 8 C -0.14 -1.76 9.37 37.15 0.35 -1.41 16 9 N -0.67 -13.95 6.22 -102.21 -0.64 -14.59 16 10 C 0.22 5.60 2.69 -70.23 -0.19 5.41 16 11 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 12 C -0.54 -15.24 8.81 -34.44 -0.30 -15.54 16 13 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.07 2.10 4.97 -17.82 -0.09 2.01 16 15 N -0.82 -25.03 10.23 55.43 0.57 -24.46 16 16 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.51 13.18 7.10 -11.67 -0.08 13.09 16 21 O -0.48 -14.25 12.22 5.55 0.07 -14.18 16 22 H 0.09 1.09 7.84 -52.48 -0.41 0.68 16 23 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 24 H 0.11 2.03 8.06 -52.48 -0.42 1.60 16 25 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 26 H 0.09 1.83 7.21 -51.93 -0.37 1.45 16 27 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 28 H 0.06 0.81 8.13 -51.92 -0.42 0.39 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.34 6.42 8.71 -39.29 -0.34 6.07 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 274.72 15.07 4.14 4.14 Total: -1.00 -32.40 274.72 -6.77 -39.17 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.87 Total: 2.28 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.52 Total: 4.01 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.56 Total: -52.66 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.07 Total: -14.18 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.40 -6.77 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376392.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.712 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds