Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00436 * 2 1 4 4 N 1.46492 * 109.47442 * 124.99494 * 3 2 1 5 5 C 1.46003 * 118.54043 * 269.97960 * 4 3 2 6 6 C 1.52992 * 110.04486 * 161.86176 * 5 4 3 7 7 H 1.09003 * 109.61336 * 290.53690 * 6 5 4 8 8 C 1.52992 * 109.59193 * 170.06980 * 6 5 4 9 9 N 1.47189 * 108.71408 * 50.30578 * 6 5 4 10 10 C 1.46906 * 110.17626 * 290.98789 * 9 6 5 11 11 H 1.08999 * 109.38434 * 290.24337 * 10 9 6 12 12 C 1.50705 * 109.38539 * 170.45314 * 10 9 6 13 13 H 1.07998 * 120.00202 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99715 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00103 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99882 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47043 * 90.00104 * 16 14 12 18 18 H 1.48494 * 109.47371 * 210.00315 * 16 14 12 19 19 H 1.48504 * 109.47156 * 330.00298 * 16 14 12 20 20 C 1.33718 * 118.53520 * 90.00581 * 4 3 2 21 21 O 1.21287 * 118.62436 * 1.65822 * 20 4 3 22 22 H 1.08003 * 119.99906 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.99846 * 179.97438 * 1 2 3 24 24 H 1.08009 * 119.99883 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.46566 * 4.99296 * 3 2 1 26 26 H 1.09001 * 109.46549 * 245.00059 * 3 2 1 27 27 H 1.08996 * 109.37606 * 282.04205 * 5 4 3 28 28 H 1.09008 * 109.37450 * 41.80343 * 5 4 3 29 29 H 1.09001 * 109.47271 * 300.77759 * 8 6 5 30 30 H 1.09001 * 109.47456 * 60.77744 * 8 6 5 31 31 H 1.09003 * 109.47646 * 180.78175 * 8 6 5 32 32 H 1.00905 * 111.00285 * 167.62290 * 9 6 5 33 33 H 0.96993 * 120.00160 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5269 1.8706 2.4056 6 6 3.4469 1.4104 3.5381 7 1 3.3205 0.3400 3.7002 8 6 3.1024 2.1710 4.8201 9 7 4.8409 1.6906 3.1574 10 6 5.2514 0.8115 2.0544 11 1 5.3360 -0.2120 2.4197 12 6 6.5869 1.2652 1.5236 13 1 7.0802 2.1199 1.9622 14 6 7.1794 0.5883 0.4786 15 7 6.5789 -0.4528 -0.0552 16 14 8.8344 1.1511 -0.1798 17 1 9.9218 0.4595 0.5581 18 1 8.9300 0.8224 -1.6248 19 1 8.9671 2.6187 0.0039 20 6 4.2327 0.8625 0.9510 21 8 4.5476 0.4613 -0.1494 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3586 2.1316 0.0894 26 1 2.6213 1.4025 -0.9314 27 1 2.5267 2.9595 2.3596 28 1 1.5140 1.5167 2.5985 29 1 3.2237 3.2410 4.6515 30 1 2.0699 1.9621 5.1002 31 1 3.7681 1.8518 5.6221 32 1 5.4589 1.5906 3.9487 33 1 6.9955 -0.9288 -0.7905 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219376392.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = -10.508393 kcal Electronic energy + Delta-G solvation = -16091.797991 eV Core-core repulsion = 13538.970153 eV Total energy + Delta-G solvation = -2552.827839 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02541 -37.63603 -36.78616 -34.69659 -33.43715 -32.21127 -28.27151 -27.74566 -26.52715 -24.20314 -22.57145 -20.72845 -19.35335 -18.63052 -17.50704 -17.35477 -16.69718 -16.33405 -15.61736 -15.43010 -15.17657 -14.71219 -14.01789 -13.97226 -13.61845 -13.20708 -13.15962 -12.82745 -12.69914 -12.47025 -12.29443 -12.15256 -12.06699 -11.79960 -11.37467 -10.61201 -10.42906 -9.92276 -9.36519 -9.21092 -8.00422 -6.16479 1.29026 1.38827 1.42585 1.52270 2.26047 2.50284 2.54113 3.27035 3.45461 3.91579 4.00898 4.10032 4.24157 4.35373 4.47097 4.60913 4.74055 4.81984 4.86646 5.00638 5.05579 5.08310 5.17866 5.39865 5.59425 5.68184 5.71404 5.88721 6.00356 6.36821 6.61634 6.78948 7.00914 7.47335 7.94822 8.98540 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.010752 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.526009 B = 2603.488895 C = 3465.257157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.184 4.184 3 C 0.138 3.862 4 N -0.626 5.626 5 C 0.129 3.871 6 C 0.057 3.943 7 H 0.023 0.977 8 C -0.128 4.128 9 N -0.673 5.673 10 C 0.217 3.783 11 H -0.014 1.014 12 C -0.553 4.553 13 H 0.065 0.935 14 C 0.018 3.982 15 N -0.855 5.855 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.268 1.268 20 C 0.499 3.501 21 O -0.532 6.532 22 H 0.123 0.877 23 H 0.110 0.890 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.344 0.656 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 4.350 6.996 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.203 4.203 3 C 0.016 3.984 4 N -0.362 5.362 5 C 0.007 3.993 6 C -0.053 4.053 7 H 0.041 0.959 8 C -0.185 4.185 9 N -0.307 5.307 10 C 0.105 3.895 11 H 0.003 0.997 12 C -0.591 4.591 13 H 0.083 0.917 14 C -0.188 4.188 15 N -0.489 5.489 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.218 1.218 19 H -0.192 1.192 20 C 0.287 3.713 21 O -0.404 6.404 22 H 0.141 0.859 23 H 0.129 0.871 24 H 0.089 0.911 25 H 0.124 0.876 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.942 4.509 5.846 14.040 hybrid contribution 1.219 -1.128 -0.291 1.685 sum -10.724 3.382 5.556 12.542 Atomic orbital electron populations 1.23995 0.94033 1.03477 0.98035 1.23141 0.96989 0.97880 1.02327 1.20455 0.91693 0.96021 0.90249 1.48039 1.11566 1.63998 1.12616 1.21592 0.97655 0.98678 0.81410 1.21973 0.89455 0.97576 0.96282 0.95871 1.21684 1.02704 1.00589 0.93566 1.60976 1.02883 1.56012 1.10805 1.18892 0.92875 0.90472 0.87252 0.99715 1.20931 1.02759 1.15655 1.19736 0.91654 1.25853 1.01037 0.95279 0.96594 1.70443 1.36840 1.18877 1.22726 0.85505 0.79802 0.78894 0.77011 1.19154 1.21772 1.19205 1.21750 0.81899 0.76238 0.91430 1.90699 1.77457 1.45967 1.26287 0.85890 0.87139 0.91082 0.87581 0.92959 0.91162 0.88897 0.91242 0.89592 0.91764 0.83773 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 14.32 67.79 0.97 -2.67 16 2 C -0.18 -6.03 9.84 25.66 0.25 -5.77 16 3 C 0.14 4.97 5.73 85.64 0.49 5.46 16 4 N -0.63 -26.03 2.81 -829.59 -2.33 -28.36 16 5 C 0.13 4.04 5.88 86.47 0.51 4.55 16 6 C 0.06 1.84 3.12 44.85 0.14 1.98 16 7 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 8 C -0.13 -2.74 9.37 71.98 0.67 -2.07 16 9 N -0.67 -27.81 6.22 -477.28 -2.97 -30.78 16 10 C 0.22 11.64 2.69 43.28 0.12 11.75 16 11 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 12 C -0.55 -32.48 8.81 25.60 0.23 -32.26 16 13 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 14 C 0.02 1.08 4.97 84.66 0.42 1.50 16 15 N -0.85 -54.74 10.23 21.45 0.22 -54.52 16 16 Si 0.96 46.99 29.54 68.60 2.03 49.01 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 C 0.50 26.95 7.10 87.68 0.62 27.57 16 21 O -0.53 -33.37 12.22 -3.05 -0.04 -33.41 16 22 H 0.12 2.16 7.84 -2.91 -0.02 2.14 16 23 H 0.11 2.19 8.06 -2.91 -0.02 2.17 16 24 H 0.07 2.83 8.06 -2.91 -0.02 2.80 16 25 H 0.11 2.87 7.68 -2.39 -0.02 2.85 16 26 H 0.05 2.24 7.21 -2.39 -0.02 2.22 16 27 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 28 H 0.09 2.26 8.13 -2.38 -0.02 2.24 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.34 13.08 8.71 -89.69 -0.78 12.30 16 33 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -75.51 274.72 1.64 -73.87 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.31 Total: 14.16 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 4.42 Total: 10.04 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -5.08 Total: -113.67 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.04 Total: -33.41 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -75.51 1.64 -73.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376392.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.360 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds