Wall clock time and date at job start Mon Mar 30 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47144 * 111.06978 * 2 1 4 4 C 1.52987 * 108.64208 * 54.27635 * 3 2 1 5 5 N 1.46011 * 110.03701 * 50.32727 * 4 3 2 6 6 C 1.46496 * 118.53614 * 161.86002 * 5 4 3 7 7 C 1.53006 * 117.49974 * 8.64987 * 6 5 4 8 8 C 1.53002 * 117.49882 * 299.98976 * 6 5 4 9 9 C 1.33716 * 122.92776 * 341.83420 * 5 4 3 10 10 O 1.21283 * 118.62525 * 181.66803 * 9 5 4 11 11 C 1.46901 * 110.99681 * 122.96543 * 2 1 3 12 12 H 1.09000 * 109.38895 * 166.88423 * 11 2 1 13 13 C 1.50697 * 109.38832 * 47.08458 * 11 2 1 14 14 H 1.08004 * 120.00388 * 269.96488 * 13 11 2 15 15 C 1.37880 * 119.99779 * 89.69294 * 13 11 2 16 16 N 1.31512 * 119.99890 * 0.27954 * 15 13 11 17 17 Si 1.86796 * 120.00150 * 180.27347 * 15 13 11 18 18 H 1.48507 * 109.47005 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47116 * 120.00128 * 17 15 13 20 20 H 1.48499 * 109.47367 * 240.00171 * 17 15 13 21 21 H 1.09003 * 109.47293 * 290.61706 * 1 2 3 22 22 H 1.09004 * 109.47297 * 50.61675 * 1 2 3 23 23 H 1.09004 * 109.47332 * 170.61363 * 1 2 3 24 24 H 1.09009 * 109.61280 * 294.55381 * 3 2 1 25 25 H 1.08996 * 109.66661 * 174.04168 * 3 2 1 26 26 H 1.08991 * 109.37664 * 290.15365 * 4 3 2 27 27 H 1.09004 * 109.28132 * 170.43658 * 4 3 2 28 28 H 1.09004 * 115.55176 * 154.31875 * 6 5 4 29 29 H 1.09000 * 117.49615 * 359.97438 * 7 6 5 30 30 H 1.08998 * 117.49866 * 145.02092 * 7 6 5 31 31 H 1.09005 * 117.49439 * 214.97633 * 8 6 5 32 32 H 1.08999 * 117.50102 * 359.97438 * 8 6 5 33 33 H 0.97009 * 119.99935 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3731 0.0000 4 6 1.3840 2.1337 1.1768 5 7 1.5323 1.3587 2.4054 6 6 1.3881 2.0486 3.6897 7 6 0.8916 3.4956 3.6626 8 6 2.3567 3.1947 3.9886 9 6 1.7932 0.0473 2.4105 10 8 1.8705 -0.5256 3.4767 11 6 1.9954 -0.7463 1.1507 12 1 3.0599 -0.9306 1.0061 13 6 1.2710 -2.0626 1.2670 14 1 0.3722 -2.1337 1.8617 15 6 1.7525 -3.1749 0.6098 16 7 2.8470 -3.0884 -0.1141 17 14 0.8504 -4.8047 0.7478 18 1 -0.3441 -4.6376 1.6142 19 1 0.4231 -5.2499 -0.6030 20 1 1.7545 -5.8223 1.3413 21 1 -0.3634 0.3619 0.9619 22 1 -0.3634 0.6521 -0.7943 23 1 -0.3634 -1.0139 -0.1676 24 1 1.7314 1.8679 -0.9340 25 1 3.0825 1.3484 0.1065 26 1 0.3253 2.3057 0.9834 27 1 1.8914 3.0918 1.2902 28 1 1.0738 1.4243 4.5261 29 1 0.6726 3.9343 2.6891 30 1 0.2509 3.8233 4.4813 31 1 2.6791 3.3246 5.0217 32 1 3.1014 3.4352 3.2299 33 1 3.1856 -3.8709 -0.5769 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219376555.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:58 Heat of formation + Delta-G solvation = 13.706617 kcal Electronic energy + Delta-G solvation = -16276.094595 eV Core-core repulsion = 13724.316798 eV Total energy + Delta-G solvation = -2551.777797 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.05820 -36.89705 -36.29924 -33.18417 -31.86513 -29.14639 -27.29892 -25.44949 -23.38858 -22.43364 -21.74708 -20.66883 -17.75592 -16.65828 -16.47660 -15.98917 -15.06505 -14.62626 -14.27104 -13.90296 -13.61080 -13.33853 -12.72460 -12.40044 -11.91837 -11.68433 -11.41919 -11.24941 -10.97146 -10.88994 -10.74069 -10.57190 -10.41299 -10.31708 -10.02827 -9.23885 -9.08324 -8.57678 -7.96423 -7.07487 -6.10145 -4.15707 3.29179 3.37551 3.41836 3.49325 3.56025 4.10135 4.41993 4.86923 4.91099 5.06907 5.11262 5.22810 5.46789 5.58839 5.64339 5.67019 5.84825 5.96422 6.02453 6.13922 6.20882 6.30317 6.33469 6.49985 6.89487 7.04766 7.27588 7.63881 7.80756 8.05542 8.33839 8.40481 8.89521 9.17195 9.49596 10.99360 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040352 B = 0.009184 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.729087 B = 3047.915771 C = 3346.667876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.516 5.516 3 C 0.033 3.967 4 C 0.083 3.917 5 N -0.594 5.594 6 C 0.083 3.917 7 C -0.192 4.192 8 C -0.197 4.197 9 C 0.493 3.507 10 O -0.546 6.546 11 C 0.201 3.799 12 H 0.100 0.900 13 C -0.497 4.497 14 H 0.059 0.941 15 C 0.079 3.921 16 N -0.871 5.871 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.011 0.989 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 11.609 1.249 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.240 5.240 3 C -0.097 4.097 4 C -0.042 4.042 5 N -0.329 5.329 6 C -0.023 4.023 7 C -0.230 4.230 8 C -0.236 4.236 9 C 0.282 3.718 10 O -0.421 6.421 11 C 0.093 3.907 12 H 0.117 0.883 13 C -0.536 4.536 14 H 0.077 0.923 15 C -0.127 4.127 16 N -0.507 5.507 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.029 0.971 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.458 10.886 1.224 11.227 hybrid contribution -0.677 -0.135 0.782 1.044 sum -3.135 10.751 2.006 11.377 Atomic orbital electron populations 1.22121 0.88806 1.02332 0.97465 1.63117 1.07339 1.09001 1.44525 1.22582 1.00242 0.91322 0.95531 1.22074 1.00789 0.95569 0.85770 1.47423 1.72247 1.08902 1.04313 1.21594 1.02520 0.88087 0.90050 1.23301 0.97486 0.99003 1.03208 1.23319 0.92893 1.04884 1.02489 1.22851 0.73911 0.79978 0.95050 1.90540 1.50228 1.68381 1.32904 1.19712 1.00639 0.90922 0.79450 0.88302 1.20560 1.11054 0.91427 1.30524 0.92258 1.24944 0.94650 0.98949 0.94173 1.69950 1.20824 1.30030 1.29865 0.86407 0.79910 0.83136 0.77781 1.19599 1.20801 1.20768 0.97056 0.94011 0.90270 0.90145 0.90784 0.92405 0.91961 0.85440 0.88577 0.88448 0.88559 0.88889 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 8.06 60.06 0.48 1.31 16 2 N -0.52 -11.33 5.16 -237.75 -1.23 -12.56 16 3 C 0.03 0.56 6.04 -3.70 -0.02 0.54 16 4 C 0.08 1.31 4.50 -4.31 -0.02 1.29 16 5 N -0.59 -11.48 2.97 -166.99 -0.50 -11.98 16 6 C 0.08 1.39 6.10 -67.93 -0.41 0.98 16 7 C -0.19 -2.40 9.72 -26.69 -0.26 -2.66 16 8 C -0.20 -2.65 10.07 -26.69 -0.27 -2.91 16 9 C 0.49 11.91 6.37 -11.67 -0.07 11.84 16 10 O -0.55 -14.97 15.88 5.55 0.09 -14.88 16 11 C 0.20 5.11 2.46 -70.23 -0.17 4.94 16 12 H 0.10 2.80 7.44 -51.93 -0.39 2.41 16 13 C -0.50 -13.81 6.16 -34.44 -0.21 -14.03 16 14 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 15 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 16 N -0.87 -24.84 12.87 55.43 0.71 -24.13 16 17 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H 0.01 0.23 6.20 -51.93 -0.32 -0.10 16 22 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.08 1.75 7.08 -51.93 -0.37 1.38 16 24 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 26 H 0.06 0.87 7.08 -51.93 -0.37 0.50 16 27 H 0.06 0.83 6.67 -51.93 -0.35 0.48 16 28 H 0.13 2.33 7.47 -51.93 -0.39 1.95 16 29 H 0.10 1.12 6.62 -51.93 -0.34 0.78 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.24 7.90 -51.93 -0.41 0.83 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 265.85 15.07 4.01 4.01 Total: -1.00 -31.08 265.85 -7.58 -38.66 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.58 Total: 1.02 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.06 Total: 3.38 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -1.01 Total: -48.67 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.09 Total: -14.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.08 -7.58 -38.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376555.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.369 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds