Wall clock time and date at job start Mon Mar 30 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47144 * 111.06978 * 2 1 4 4 C 1.52987 * 108.64208 * 54.27635 * 3 2 1 5 5 N 1.46011 * 110.03701 * 50.32727 * 4 3 2 6 6 C 1.46496 * 118.53614 * 161.86002 * 5 4 3 7 7 C 1.53006 * 117.49974 * 8.64987 * 6 5 4 8 8 C 1.53002 * 117.49882 * 299.98976 * 6 5 4 9 9 C 1.33716 * 122.92776 * 341.83420 * 5 4 3 10 10 O 1.21283 * 118.62525 * 181.66803 * 9 5 4 11 11 C 1.46901 * 110.99681 * 122.96543 * 2 1 3 12 12 H 1.09000 * 109.38895 * 166.88423 * 11 2 1 13 13 C 1.50697 * 109.38832 * 47.08458 * 11 2 1 14 14 H 1.08004 * 120.00388 * 269.96488 * 13 11 2 15 15 C 1.37880 * 119.99779 * 89.69294 * 13 11 2 16 16 N 1.31512 * 119.99890 * 0.27954 * 15 13 11 17 17 Si 1.86796 * 120.00150 * 180.27347 * 15 13 11 18 18 H 1.48507 * 109.47005 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47116 * 120.00128 * 17 15 13 20 20 H 1.48499 * 109.47367 * 240.00171 * 17 15 13 21 21 H 1.09003 * 109.47293 * 290.61706 * 1 2 3 22 22 H 1.09004 * 109.47297 * 50.61675 * 1 2 3 23 23 H 1.09004 * 109.47332 * 170.61363 * 1 2 3 24 24 H 1.09009 * 109.61280 * 294.55381 * 3 2 1 25 25 H 1.08996 * 109.66661 * 174.04168 * 3 2 1 26 26 H 1.08991 * 109.37664 * 290.15365 * 4 3 2 27 27 H 1.09004 * 109.28132 * 170.43658 * 4 3 2 28 28 H 1.09004 * 115.55176 * 154.31875 * 6 5 4 29 29 H 1.09000 * 117.49615 * 359.97438 * 7 6 5 30 30 H 1.08998 * 117.49866 * 145.02092 * 7 6 5 31 31 H 1.09005 * 117.49439 * 214.97633 * 8 6 5 32 32 H 1.08999 * 117.50102 * 359.97438 * 8 6 5 33 33 H 0.97009 * 119.99935 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3731 0.0000 4 6 1.3840 2.1337 1.1768 5 7 1.5323 1.3587 2.4054 6 6 1.3881 2.0486 3.6897 7 6 0.8916 3.4956 3.6626 8 6 2.3567 3.1947 3.9886 9 6 1.7932 0.0473 2.4105 10 8 1.8705 -0.5256 3.4767 11 6 1.9954 -0.7463 1.1507 12 1 3.0599 -0.9306 1.0061 13 6 1.2710 -2.0626 1.2670 14 1 0.3722 -2.1337 1.8617 15 6 1.7525 -3.1749 0.6098 16 7 2.8470 -3.0884 -0.1141 17 14 0.8504 -4.8047 0.7478 18 1 -0.3441 -4.6376 1.6142 19 1 0.4231 -5.2499 -0.6030 20 1 1.7545 -5.8223 1.3413 21 1 -0.3634 0.3619 0.9619 22 1 -0.3634 0.6521 -0.7943 23 1 -0.3634 -1.0139 -0.1676 24 1 1.7314 1.8679 -0.9340 25 1 3.0825 1.3484 0.1065 26 1 0.3253 2.3057 0.9834 27 1 1.8914 3.0918 1.2902 28 1 1.0738 1.4243 4.5261 29 1 0.6726 3.9343 2.6891 30 1 0.2509 3.8233 4.4813 31 1 2.6791 3.3246 5.0217 32 1 3.1014 3.4352 3.2299 33 1 3.1856 -3.8709 -0.5769 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219376555.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:58 Heat of formation + Delta-G solvation = -9.411647 kcal Electronic energy + Delta-G solvation = -16277.097079 eV Core-core repulsion = 13724.316798 eV Total energy + Delta-G solvation = -2552.780280 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69088 -38.27219 -38.08467 -35.01536 -33.58027 -30.86806 -28.99716 -27.24668 -25.06478 -23.73660 -23.08170 -22.18654 -19.29986 -18.61366 -18.09738 -17.65559 -16.74244 -16.27493 -15.82348 -15.53286 -15.32790 -14.88359 -14.31319 -14.00591 -13.41002 -13.35564 -12.94201 -12.80294 -12.77166 -12.42822 -12.26279 -12.14974 -12.05494 -11.78334 -11.48824 -11.27733 -10.94899 -10.67981 -9.43029 -8.77650 -8.20508 -6.31953 1.38758 1.40661 1.52687 1.76300 1.99708 2.42411 2.92113 3.02249 3.53251 3.72066 3.90951 3.96196 4.04003 4.23159 4.24880 4.41671 4.61903 4.69174 4.75255 4.82449 4.88681 4.99134 5.03733 5.10956 5.16912 5.36296 5.55400 5.65667 5.82003 6.27787 6.59154 6.67023 6.78071 7.31578 7.40414 8.89571 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040352 B = 0.009184 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.729087 B = 3047.915771 C = 3346.667876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.535 5.535 3 C 0.031 3.969 4 C 0.081 3.919 5 N -0.586 5.586 6 C 0.031 3.969 7 C -0.152 4.152 8 C -0.182 4.182 9 C 0.487 3.513 10 O -0.596 6.596 11 C 0.206 3.794 12 H 0.060 0.940 13 C -0.511 4.511 14 H 0.038 0.962 15 C 0.032 3.968 16 N -0.901 5.901 17 Si 0.961 3.039 18 H -0.274 1.274 19 H -0.268 1.268 20 H -0.279 1.279 21 H 0.005 0.995 22 H 0.082 0.918 23 H 0.050 0.950 24 H 0.119 0.881 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 14.233 0.620 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.259 5.259 3 C -0.098 4.098 4 C -0.042 4.042 5 N -0.318 5.318 6 C -0.074 4.074 7 C -0.190 4.190 8 C -0.221 4.221 9 C 0.276 3.724 10 O -0.475 6.475 11 C 0.096 3.904 12 H 0.077 0.923 13 C -0.550 4.550 14 H 0.057 0.943 15 C -0.170 4.170 16 N -0.538 5.538 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.193 1.193 20 H -0.204 1.204 21 H 0.023 0.977 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.137 0.863 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.428 13.582 0.570 14.020 hybrid contribution -0.374 -0.803 0.995 1.332 sum -3.802 12.780 1.565 13.425 Atomic orbital electron populations 1.22050 0.87626 1.01583 0.98544 1.62796 1.08410 1.11916 1.42734 1.22733 0.99798 0.89073 0.98179 1.22300 1.02312 0.96133 0.83444 1.47260 1.70132 1.07599 1.06805 1.21720 1.07649 0.89749 0.88251 1.23443 0.96785 0.93793 1.04950 1.23405 0.93722 1.01366 1.03603 1.22498 0.74276 0.81903 0.93716 1.90494 1.52960 1.70009 1.34087 1.19324 0.98161 0.91370 0.81516 0.92283 1.20650 1.10623 0.93393 1.30328 0.94340 1.25659 0.95437 1.02003 0.93931 1.70043 1.21989 1.30975 1.30817 0.85484 0.78575 0.79190 0.78214 1.19887 1.19297 1.20425 0.97652 0.89894 0.93161 0.86286 0.91634 0.90500 0.88018 0.88279 0.86673 0.86219 0.87214 0.88312 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.96 8.06 127.69 1.03 2.99 16 2 N -0.53 -23.33 5.16 -906.09 -4.68 -28.01 16 3 C 0.03 0.98 6.04 86.25 0.52 1.50 16 4 C 0.08 2.28 4.50 86.47 0.39 2.67 16 5 N -0.59 -22.08 2.97 -801.22 -2.38 -24.46 16 6 C 0.03 0.99 6.10 44.99 0.27 1.27 16 7 C -0.15 -3.12 9.72 30.62 0.30 -2.83 16 8 C -0.18 -4.31 10.07 30.62 0.31 -4.00 16 9 C 0.49 24.33 6.37 87.68 0.56 24.89 16 10 O -0.60 -34.48 15.88 -3.04 -0.05 -34.53 16 11 C 0.21 10.88 2.46 43.28 0.11 10.99 16 12 H 0.06 3.56 7.44 -2.39 -0.02 3.54 16 13 C -0.51 -29.70 6.16 25.60 0.16 -29.54 16 14 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 15 C 0.03 1.84 5.46 84.66 0.46 2.30 16 16 N -0.90 -53.04 12.87 21.45 0.28 -52.76 16 17 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 18 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H 0.00 0.20 6.20 -2.39 -0.01 0.19 16 22 H 0.08 2.54 8.09 -2.39 -0.02 2.52 16 23 H 0.05 2.24 7.08 -2.39 -0.02 2.22 16 24 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 25 H 0.07 2.21 8.08 -2.39 -0.02 2.20 16 26 H 0.08 1.95 7.08 -2.39 -0.02 1.93 16 27 H 0.10 2.14 6.67 -2.39 -0.02 2.12 16 28 H 0.10 3.73 7.47 -2.39 -0.02 3.71 16 29 H 0.12 1.98 6.62 -2.39 -0.02 1.96 16 30 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.10 2.25 7.90 -2.39 -0.02 2.23 16 33 H 0.27 14.71 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -72.16 265.85 0.40 -71.77 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.10 Total: 10.44 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.11 Total: 10.24 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -6.78 Total: -105.24 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.05 Total: -34.53 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.16 0.40 -71.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376555.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.355 kcal (2) G-P(sol) polarization free energy of solvation -72.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds