Wall clock time and date at job start Mon Mar 30 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.58946 * 2 1 4 4 C 1.52987 * 109.59514 * 239.54889 * 2 1 3 5 5 N 1.46008 * 110.04278 * 189.93121 * 4 2 1 6 6 C 1.33714 * 122.92853 * 18.16096 * 5 4 2 7 7 O 1.21274 * 118.62801 * 178.31416 * 6 5 4 8 8 C 1.50266 * 122.74946 * 358.31267 * 6 5 4 9 9 H 1.08996 * 109.38399 * 257.04638 * 8 6 5 10 10 C 1.50696 * 109.38255 * 137.35683 * 8 6 5 11 11 H 1.07997 * 120.00653 * 325.62839 * 10 8 6 12 12 C 1.37884 * 119.99580 * 145.63228 * 10 8 6 13 13 N 1.31517 * 119.99690 * 186.12749 * 12 10 8 14 14 Si 1.86800 * 120.00194 * 6.13368 * 12 10 8 15 15 H 1.48498 * 109.47310 * 84.74974 * 14 12 10 16 16 H 1.48495 * 109.47223 * 204.75335 * 14 12 10 17 17 H 1.48498 * 109.46919 * 324.75228 * 14 12 10 18 18 N 1.46902 * 109.97756 * 17.20031 * 8 6 5 19 19 C 1.46900 * 110.99957 * 73.07063 * 18 8 6 20 20 C 1.52991 * 117.50132 * 138.61221 * 19 18 8 21 21 C 1.52992 * 117.50135 * 69.94522 * 19 18 8 22 22 H 1.09001 * 109.47401 * 299.69213 * 1 2 3 23 23 H 1.09006 * 109.47272 * 59.69631 * 1 2 3 24 24 H 1.09003 * 109.46782 * 179.69251 * 1 2 3 25 25 H 1.08994 * 109.37454 * 310.10695 * 4 2 1 26 26 H 1.09008 * 109.37475 * 69.75670 * 4 2 1 27 27 H 0.96997 * 118.53839 * 198.13855 * 5 4 2 28 28 H 0.96998 * 119.99831 * 180.02562 * 13 12 10 29 29 H 1.09003 * 115.54420 * 284.27489 * 19 18 8 30 30 H 1.09003 * 117.50025 * 359.97438 * 20 19 18 31 31 H 1.08993 * 117.50674 * 145.02012 * 20 19 18 32 32 H 1.08994 * 117.50057 * 214.98106 * 21 19 18 33 33 H 1.09005 * 117.50096 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0430 -0.7304 -1.2425 5 7 3.4837 -0.9436 -1.1383 6 6 4.1472 -0.8719 0.0203 7 8 5.3396 -1.0934 0.0218 8 6 3.4773 -0.5283 1.3208 9 1 3.6989 0.5071 1.5793 10 6 3.9975 -1.4351 2.4062 11 1 4.2588 -2.4575 2.1767 12 6 4.1397 -0.9593 3.6925 13 7 4.7051 -1.7101 4.6125 14 14 3.5292 0.7514 4.1286 15 1 2.0822 0.6918 4.4570 16 1 4.2826 1.2617 5.3021 17 1 3.7375 1.6607 2.9731 18 7 2.0236 -0.6997 1.1971 19 6 1.6625 -2.1231 1.1614 20 6 0.4300 -2.5595 1.9559 21 6 1.8307 -2.9273 2.4520 22 1 -0.3634 0.5090 0.8927 23 1 -0.3634 0.5186 -0.8873 24 1 -0.3633 -1.0277 -0.0055 25 1 1.5403 -1.6936 -1.3291 26 1 1.8291 -0.1318 -2.1280 27 1 3.9816 -1.1467 -1.9456 28 1 4.8049 -1.3756 5.5175 29 1 1.8615 -2.6350 0.2198 30 1 -0.1127 -1.7904 2.5056 31 1 -0.1816 -3.3588 1.5375 32 1 2.1399 -3.9683 2.3596 33 1 2.2089 -2.4001 3.3279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219376836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:23 Heat of formation + Delta-G solvation = 10.386046 kcal Electronic energy + Delta-G solvation = -16688.894608 eV Core-core repulsion = 14136.972821 eV Total energy + Delta-G solvation = -2551.921788 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02168 -37.18207 -35.17210 -33.11636 -32.34318 -30.91635 -26.82767 -25.76796 -23.31599 -21.63216 -21.34969 -20.44237 -17.71965 -17.05587 -16.43730 -15.92132 -15.44689 -14.74083 -14.13494 -13.89019 -13.70052 -12.81047 -12.73023 -12.51879 -12.15614 -11.96691 -11.73980 -11.33136 -10.90763 -10.66760 -10.53702 -10.44598 -9.85532 -9.81350 -9.35092 -9.12484 -8.93262 -8.53754 -8.49090 -7.38560 -6.12848 -4.10574 3.32709 3.39153 3.43046 3.59249 3.85654 4.39464 4.46636 4.78514 5.02067 5.29918 5.32238 5.51123 5.67160 5.75200 5.79473 5.86394 5.91182 5.97851 6.15022 6.29486 6.36844 6.46929 6.52788 6.68797 6.94742 7.15356 7.40436 7.51362 7.81314 7.96488 8.08562 8.46244 8.91131 9.09538 9.45522 10.97285 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.014586 C = 0.012543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.392699 B = 1919.162267 C = 2231.786180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 H 0.080 0.920 4 C 0.087 3.913 5 N -0.741 5.741 6 C 0.496 3.504 7 O -0.544 6.544 8 C 0.161 3.839 9 H 0.086 0.914 10 C -0.475 4.475 11 H 0.081 0.919 12 C 0.082 3.918 13 N -0.884 5.884 14 Si 0.887 3.113 15 H -0.269 1.269 16 H -0.293 1.293 17 H -0.269 1.269 18 N -0.496 5.496 19 C 0.020 3.980 20 C -0.193 4.193 21 C -0.126 4.126 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.383 0.617 28 H 0.267 0.733 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 2.633 -8.509 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.052 4.052 3 H 0.098 0.902 4 C -0.039 4.039 5 N -0.395 5.395 6 C 0.282 3.718 7 O -0.418 6.418 8 C 0.053 3.947 9 H 0.103 0.897 10 C -0.514 4.514 11 H 0.099 0.901 12 C -0.122 4.122 13 N -0.520 5.520 14 Si 0.715 3.285 15 H -0.194 1.194 16 H -0.220 1.220 17 H -0.195 1.195 18 N -0.221 5.221 19 C -0.089 4.089 20 C -0.231 4.231 21 C -0.163 4.163 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.217 0.783 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.742 2.771 -7.649 12.692 hybrid contribution 0.207 0.439 -1.008 1.119 sum -9.534 3.211 -8.657 13.272 Atomic orbital electron populations 1.21701 0.93750 1.02386 1.01378 1.22039 0.96178 0.98278 0.88738 0.90179 1.21972 0.81491 1.00534 0.99942 1.45897 1.08743 1.74629 1.10257 1.22169 0.88121 0.75115 0.86357 1.90624 1.16114 1.48626 1.86462 1.20153 0.83390 1.00564 0.90552 0.89672 1.20345 1.41541 0.98668 0.90812 0.90129 1.24929 0.93743 0.97415 0.96144 1.69903 1.41289 1.37639 1.03196 0.86717 0.79578 0.84785 0.77432 1.19381 1.21977 1.19503 1.63113 1.14943 1.09728 1.34344 1.21853 1.02228 0.89407 0.95386 1.23084 0.91802 1.02636 1.05581 1.23126 0.94921 0.98615 0.99618 0.91693 0.93074 0.92037 0.92180 0.91708 0.78260 0.92337 0.91213 0.89263 0.90596 0.90669 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.00 37.16 0.33 -1.37 16 2 C 0.06 0.90 2.84 -67.57 -0.19 0.71 16 3 H 0.08 1.27 8.08 -51.92 -0.42 0.85 16 4 C 0.09 1.24 5.78 -4.31 -0.02 1.22 16 5 N -0.74 -13.14 5.50 -61.06 -0.34 -13.48 16 6 C 0.50 11.41 6.97 -11.67 -0.08 11.33 16 7 O -0.54 -14.71 17.27 5.56 0.10 -14.62 16 8 C 0.16 3.80 1.89 -70.23 -0.13 3.67 16 9 H 0.09 2.10 5.21 -51.93 -0.27 1.83 16 10 C -0.47 -12.88 5.14 -34.44 -0.18 -13.06 16 11 H 0.08 2.45 7.47 -52.49 -0.39 2.06 16 12 C 0.08 2.27 4.50 -17.82 -0.08 2.19 16 13 N -0.88 -25.84 13.96 55.43 0.77 -25.07 16 14 Si 0.89 21.40 27.60 -169.99 -4.69 16.71 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.32 6.05 56.52 0.34 -5.98 16 18 N -0.50 -9.87 4.81 -213.64 -1.03 -10.90 16 19 C 0.02 0.38 3.23 -67.72 -0.22 0.16 16 20 C -0.19 -3.27 9.36 -26.70 -0.25 -3.52 16 21 C -0.13 -2.60 8.16 -26.70 -0.22 -2.82 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.78 6.64 -51.93 -0.34 0.43 16 25 H 0.06 0.83 6.61 -51.93 -0.34 0.49 16 26 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.38 6.09 8.84 -40.82 -0.36 5.73 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.07 1.32 6.19 -51.93 -0.32 1.00 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.13 3.10 5.78 -51.93 -0.30 2.80 16 LS Contribution 258.26 15.07 3.89 3.89 Total: -1.00 -30.84 258.26 -6.82 -37.66 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.48 Total: 7.28 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.04 Total: -1.48 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.59 Total: -49.44 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.10 Total: -14.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.69 Total: 16.71 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.84 -6.82 -37.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.043 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds