Wall clock time and date at job start Mon Mar 30 2020 03:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.58946 * 2 1 4 4 C 1.52987 * 109.59514 * 239.54889 * 2 1 3 5 5 N 1.46008 * 110.04278 * 189.93121 * 4 2 1 6 6 C 1.33714 * 122.92853 * 18.16096 * 5 4 2 7 7 O 1.21274 * 118.62801 * 178.31416 * 6 5 4 8 8 C 1.50266 * 122.74946 * 358.31267 * 6 5 4 9 9 H 1.08996 * 109.38399 * 257.04638 * 8 6 5 10 10 C 1.50696 * 109.38255 * 137.35683 * 8 6 5 11 11 H 1.07997 * 120.00653 * 325.62839 * 10 8 6 12 12 C 1.37884 * 119.99580 * 145.63228 * 10 8 6 13 13 N 1.31517 * 119.99690 * 186.12749 * 12 10 8 14 14 Si 1.86800 * 120.00194 * 6.13368 * 12 10 8 15 15 H 1.48498 * 109.47310 * 84.74974 * 14 12 10 16 16 H 1.48495 * 109.47223 * 204.75335 * 14 12 10 17 17 H 1.48498 * 109.46919 * 324.75228 * 14 12 10 18 18 N 1.46902 * 109.97756 * 17.20031 * 8 6 5 19 19 C 1.46900 * 110.99957 * 73.07063 * 18 8 6 20 20 C 1.52991 * 117.50132 * 138.61221 * 19 18 8 21 21 C 1.52992 * 117.50135 * 69.94522 * 19 18 8 22 22 H 1.09001 * 109.47401 * 299.69213 * 1 2 3 23 23 H 1.09006 * 109.47272 * 59.69631 * 1 2 3 24 24 H 1.09003 * 109.46782 * 179.69251 * 1 2 3 25 25 H 1.08994 * 109.37454 * 310.10695 * 4 2 1 26 26 H 1.09008 * 109.37475 * 69.75670 * 4 2 1 27 27 H 0.96997 * 118.53839 * 198.13855 * 5 4 2 28 28 H 0.96998 * 119.99831 * 180.02562 * 13 12 10 29 29 H 1.09003 * 115.54420 * 284.27489 * 19 18 8 30 30 H 1.09003 * 117.50025 * 359.97438 * 20 19 18 31 31 H 1.08993 * 117.50674 * 145.02012 * 20 19 18 32 32 H 1.08994 * 117.50057 * 214.98106 * 21 19 18 33 33 H 1.09005 * 117.50096 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0430 -0.7304 -1.2425 5 7 3.4837 -0.9436 -1.1383 6 6 4.1472 -0.8719 0.0203 7 8 5.3396 -1.0934 0.0218 8 6 3.4773 -0.5283 1.3208 9 1 3.6989 0.5071 1.5793 10 6 3.9975 -1.4351 2.4062 11 1 4.2588 -2.4575 2.1767 12 6 4.1397 -0.9593 3.6925 13 7 4.7051 -1.7101 4.6125 14 14 3.5292 0.7514 4.1286 15 1 2.0822 0.6918 4.4570 16 1 4.2826 1.2617 5.3021 17 1 3.7375 1.6607 2.9731 18 7 2.0236 -0.6997 1.1971 19 6 1.6625 -2.1231 1.1614 20 6 0.4300 -2.5595 1.9559 21 6 1.8307 -2.9273 2.4520 22 1 -0.3634 0.5090 0.8927 23 1 -0.3634 0.5186 -0.8873 24 1 -0.3633 -1.0277 -0.0055 25 1 1.5403 -1.6936 -1.3291 26 1 1.8291 -0.1318 -2.1280 27 1 3.9816 -1.1467 -1.9456 28 1 4.8049 -1.3756 5.5175 29 1 1.8615 -2.6350 0.2198 30 1 -0.1127 -1.7904 2.5056 31 1 -0.1816 -3.3588 1.5375 32 1 2.1399 -3.9683 2.3596 33 1 2.2089 -2.4001 3.3279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219376836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:22 Heat of formation + Delta-G solvation = -14.863052 kcal Electronic energy + Delta-G solvation = -16689.989491 eV Core-core repulsion = 14136.972821 eV Total energy + Delta-G solvation = -2553.016671 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.64046 -38.88463 -36.70393 -35.00372 -33.97020 -32.55923 -28.56462 -27.05101 -25.10552 -23.09032 -22.88412 -22.07559 -19.24017 -19.06267 -18.04977 -17.52741 -16.91940 -16.51078 -15.90626 -15.49837 -15.25815 -14.64300 -14.18675 -14.01327 -13.75570 -13.40785 -13.14455 -12.87890 -12.43831 -12.29848 -12.06662 -11.92023 -11.80948 -11.51891 -11.21261 -10.85710 -10.56173 -10.54143 -10.01539 -8.97494 -8.25131 -6.25246 1.37860 1.43460 1.49504 1.77306 2.35249 2.38641 2.83799 3.27699 3.35306 3.83991 4.09636 4.10048 4.26425 4.33052 4.47530 4.57009 4.61062 4.73414 4.81950 4.95438 5.01392 5.11381 5.25172 5.32540 5.42621 5.50853 5.77415 5.91924 6.11003 6.19773 6.45383 6.59211 6.73541 7.28592 7.41379 8.89608 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.014586 C = 0.012543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.392699 B = 1919.162267 C = 2231.786180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.049 3.951 3 H 0.081 0.919 4 C 0.083 3.917 5 N -0.723 5.723 6 C 0.491 3.509 7 O -0.598 6.598 8 C 0.165 3.835 9 H 0.076 0.924 10 C -0.466 4.466 11 H 0.031 0.969 12 C 0.032 3.968 13 N -0.934 5.934 14 Si 0.945 3.055 15 H -0.257 1.257 16 H -0.295 1.295 17 H -0.257 1.257 18 N -0.503 5.503 19 C 0.018 3.982 20 C -0.146 4.146 21 C -0.161 4.161 22 H 0.058 0.942 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.397 0.603 28 H 0.267 0.733 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.278 4.059 -10.840 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.060 4.060 3 H 0.099 0.901 4 C -0.042 4.042 5 N -0.376 5.376 6 C 0.278 3.722 7 O -0.478 6.478 8 C 0.056 3.944 9 H 0.094 0.906 10 C -0.505 4.505 11 H 0.049 0.951 12 C -0.168 4.168 13 N -0.574 5.574 14 Si 0.771 3.229 15 H -0.181 1.181 16 H -0.222 1.222 17 H -0.182 1.182 18 N -0.228 5.228 19 C -0.090 4.090 20 C -0.183 4.183 21 C -0.198 4.198 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.130 0.870 27 H 0.232 0.768 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.975 4.204 -10.042 16.937 hybrid contribution 1.140 -0.076 -0.402 1.211 sum -11.834 4.128 -10.444 16.314 Atomic orbital electron populations 1.21657 0.90641 1.03126 1.02888 1.22306 0.98575 0.97805 0.87295 0.90080 1.22287 0.78717 1.02061 1.01088 1.45702 1.10505 1.72385 1.08974 1.22021 0.87448 0.75035 0.87714 1.90597 1.18346 1.51412 1.87434 1.19880 0.85784 0.98844 0.89904 0.90635 1.20247 1.41146 0.96987 0.92098 0.95087 1.25638 0.94043 1.01152 0.95970 1.70037 1.43882 1.39785 1.03658 0.85782 0.79445 0.80393 0.77306 1.18117 1.22189 1.18151 1.62846 1.11895 1.10525 1.37519 1.21923 1.03688 0.88791 0.94636 1.23109 0.89964 1.02602 1.02636 1.22858 0.99276 0.98281 0.99432 0.92281 0.89541 0.91656 0.90669 0.87020 0.76772 0.92435 0.90662 0.88766 0.87017 0.91340 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.00 71.98 0.65 -1.84 16 2 C 0.05 1.34 2.84 44.86 0.13 1.46 16 3 H 0.08 2.24 8.08 -2.38 -0.02 2.22 16 4 C 0.08 1.97 5.78 86.47 0.50 2.47 16 5 N -0.72 -23.81 5.50 -466.08 -2.56 -26.37 16 6 C 0.49 22.54 6.97 87.69 0.61 23.15 16 7 O -0.60 -33.27 17.27 -3.01 -0.05 -33.33 16 8 C 0.17 7.80 1.89 43.29 0.08 7.88 16 9 H 0.08 3.70 5.21 -2.39 -0.01 3.69 16 10 C -0.47 -26.42 5.14 25.60 0.13 -26.29 16 11 H 0.03 2.02 7.47 -2.91 -0.02 2.00 16 12 C 0.03 1.81 4.50 84.66 0.38 2.19 16 13 N -0.93 -57.71 13.96 21.45 0.30 -57.41 16 14 Si 0.95 44.87 27.60 68.60 1.89 46.77 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 17 H -0.26 -11.52 6.05 99.48 0.60 -10.92 16 18 N -0.50 -19.05 4.81 -829.83 -3.99 -23.04 16 19 C 0.02 0.67 3.23 44.91 0.15 0.81 16 20 C -0.15 -4.50 9.36 30.62 0.29 -4.22 16 21 C -0.16 -6.77 8.16 30.62 0.25 -6.52 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.06 1.27 6.64 -2.39 -0.02 1.25 16 25 H 0.08 1.66 6.61 -2.39 -0.02 1.65 16 26 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.40 11.54 8.84 -92.71 -0.82 10.72 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.08 2.67 6.19 -2.39 -0.01 2.65 16 30 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.09 4.39 5.78 -2.38 -0.01 4.37 16 Total: -1.00 -72.48 258.26 -1.05 -73.53 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.19 Total: 20.74 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 3.16 Total: -0.89 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -6.25 Total: -106.82 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.05 Total: -33.33 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.89 Total: 46.77 kcal Total: -72.48 -1.05 -73.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.668 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds