Wall clock time and date at job start Mon Mar 30 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.59504 * 2 1 4 4 C 1.52988 * 109.59341 * 120.45090 * 2 1 3 5 5 N 1.46010 * 110.04072 * 170.06943 * 4 2 1 6 6 C 1.33715 * 122.92961 * 341.83739 * 5 4 2 7 7 O 1.21280 * 118.62681 * 181.69058 * 6 5 4 8 8 C 1.50262 * 122.75136 * 1.69130 * 6 5 4 9 9 H 1.08999 * 109.38707 * 222.64465 * 8 6 5 10 10 C 1.50697 * 109.38556 * 102.95297 * 8 6 5 11 11 H 1.08003 * 119.99940 * 239.48664 * 10 8 6 12 12 C 1.37876 * 120.00291 * 59.48426 * 10 8 6 13 13 N 1.31512 * 119.99632 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00097 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47318 * 59.99897 * 14 12 10 16 16 H 1.48499 * 109.46814 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.46915 * 299.99834 * 14 12 10 18 18 N 1.46909 * 109.97623 * 342.79608 * 8 6 5 19 19 C 1.46890 * 111.00146 * 286.93196 * 18 8 6 20 20 C 1.53000 * 117.50145 * 6.51429 * 19 18 8 21 21 C 1.52997 * 60.00347 * 252.51152 * 20 19 18 22 22 H 1.09001 * 109.47037 * 180.30139 * 1 2 3 23 23 H 1.08997 * 109.47612 * 300.30541 * 1 2 3 24 24 H 1.09004 * 109.46640 * 60.30472 * 1 2 3 25 25 H 1.08998 * 109.37410 * 290.24372 * 4 2 1 26 26 H 1.09002 * 109.36767 * 50.00921 * 4 2 1 27 27 H 0.97002 * 118.53401 * 161.82161 * 5 4 2 28 28 H 0.96998 * 119.99901 * 180.02562 * 13 12 10 29 29 H 1.09004 * 115.56595 * 152.20198 * 19 18 8 30 30 H 1.09002 * 117.49696 * 0.02562 * 20 19 18 31 31 H 1.09002 * 117.50343 * 145.02257 * 20 19 18 32 32 H 1.08999 * 117.49685 * 252.51237 * 21 20 19 33 33 H 1.08997 * 117.50044 * 107.48590 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0430 -0.7304 1.2425 5 7 3.4837 -0.9436 1.1384 6 6 4.1472 -0.8719 -0.0203 7 8 5.3396 -1.0935 -0.0217 8 6 3.4774 -0.5283 -1.3207 9 1 3.8536 -1.1841 -2.1059 10 6 3.7838 0.9033 -1.6782 11 1 2.9793 1.6133 -1.8009 12 6 5.0912 1.3067 -1.8486 13 7 6.0709 0.4422 -1.6986 14 14 5.4710 3.0814 -2.2910 15 1 4.9546 3.9784 -1.2261 16 1 6.9403 3.2567 -2.4159 17 1 4.8200 3.4198 -3.5820 18 7 2.0236 -0.6997 -1.1971 19 6 1.6625 -2.1230 -1.1614 20 6 2.8038 -3.1402 -1.0997 21 6 2.0008 -2.9689 -2.3907 22 1 -0.3633 -1.0277 0.0054 23 1 -0.3634 0.5185 0.8872 24 1 -0.3633 0.5091 -0.8928 25 1 1.8291 -0.1319 2.1279 26 1 1.5416 -1.6945 1.3278 27 1 3.9817 -1.1461 1.9458 28 1 6.9907 0.7261 -1.8180 29 1 0.7455 -2.3623 -0.6227 30 1 3.8226 -2.7531 -1.0852 31 1 2.6377 -4.0485 -0.5205 32 1 1.3064 -3.7645 -2.6608 33 1 2.4914 -2.4691 -3.2259 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219376915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:24 Heat of formation + Delta-G solvation = 19.793898 kcal Electronic energy + Delta-G solvation = -16728.325021 eV Core-core repulsion = 14176.811188 eV Total energy + Delta-G solvation = -2551.513833 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.99914 -36.72733 -35.10526 -33.14557 -31.95294 -30.36792 -26.55894 -25.41094 -23.36060 -21.82784 -21.54947 -20.34022 -17.90185 -16.40742 -15.98953 -15.86489 -14.93133 -14.53644 -14.45053 -13.59952 -13.24455 -12.94018 -12.35590 -12.26382 -12.06457 -11.59908 -11.45963 -11.09720 -10.83203 -10.75358 -10.72130 -10.39331 -10.13335 -9.89442 -9.64740 -9.35460 -8.65902 -8.45126 -7.95433 -7.06344 -5.89164 -4.07443 3.33683 3.38596 3.40101 4.18164 4.27834 4.40399 4.49018 4.78183 5.24521 5.33471 5.44403 5.45485 5.59986 5.69900 5.79403 5.87258 5.90638 6.05818 6.17418 6.28019 6.35678 6.51810 6.61396 6.66999 6.77329 7.08397 7.61023 7.83763 7.94190 8.00075 8.32597 8.55019 8.95325 9.55083 9.78902 11.06504 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.012041 C = 0.011216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.643552 B = 2324.779264 C = 2495.750936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.069 3.931 3 H 0.101 0.899 4 C 0.095 3.905 5 N -0.747 5.747 6 C 0.490 3.510 7 O -0.510 6.510 8 C 0.211 3.789 9 H 0.070 0.930 10 C -0.530 4.530 11 H 0.070 0.930 12 C 0.062 3.938 13 N -0.828 5.828 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.274 1.274 18 N -0.487 5.487 19 C 0.021 3.979 20 C -0.224 4.224 21 C -0.174 4.174 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.376 0.624 28 H 0.261 0.739 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.106 -3.299 4.004 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.119 0.881 4 C -0.032 4.032 5 N -0.403 5.403 6 C 0.277 3.723 7 O -0.382 6.382 8 C 0.102 3.898 9 H 0.088 0.912 10 C -0.569 4.569 11 H 0.088 0.912 12 C -0.146 4.146 13 N -0.461 5.461 14 Si 0.722 3.278 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.200 1.200 18 N -0.209 5.209 19 C -0.088 4.088 20 C -0.263 4.263 21 C -0.212 4.212 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.209 0.791 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.542 -3.174 3.322 10.591 hybrid contribution 0.832 0.513 1.002 1.400 sum -8.710 -2.661 4.325 10.082 Atomic orbital electron populations 1.21780 0.94512 1.01447 1.01812 1.21961 0.94782 0.99827 0.87466 0.88144 1.21866 0.82672 0.99132 0.99537 1.45939 1.07903 1.76037 1.10424 1.22237 0.88584 0.74824 0.86689 1.90704 1.14819 1.46528 1.86115 1.19600 0.80284 0.99701 0.90230 0.91238 1.20633 0.92398 0.93142 1.50685 0.91176 1.25145 0.96485 0.97724 0.95273 1.70286 0.99288 1.33206 1.43366 0.86627 0.77152 0.84960 0.79084 1.20362 1.21325 1.19958 1.62506 1.15997 1.06679 1.35749 1.22622 0.97857 0.87146 1.01209 1.23647 0.99394 1.01692 1.01557 1.23005 1.03312 1.01997 0.92855 0.93032 0.92746 0.91502 0.92427 0.93380 0.79083 0.92903 0.87390 0.87311 0.90071 0.89446 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.17 37.16 0.34 -1.51 16 2 C 0.07 1.21 2.72 -67.56 -0.18 1.03 16 3 H 0.10 2.02 6.89 -51.93 -0.36 1.66 16 4 C 0.09 1.56 5.97 -4.31 -0.03 1.53 16 5 N -0.75 -15.22 5.51 -61.06 -0.34 -15.56 16 6 C 0.49 12.35 4.23 -11.67 -0.05 12.30 16 7 O -0.51 -15.05 14.90 5.56 0.08 -14.97 16 8 C 0.21 5.31 1.69 -70.23 -0.12 5.19 16 9 H 0.07 1.95 6.01 -51.93 -0.31 1.63 16 10 C -0.53 -14.57 7.83 -34.44 -0.27 -14.84 16 11 H 0.07 1.89 7.41 -52.48 -0.39 1.50 16 12 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 13 N -0.83 -25.05 10.47 55.43 0.58 -24.47 16 14 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.49 -9.96 4.70 -213.63 -1.00 -10.96 16 19 C 0.02 0.38 4.36 -67.71 -0.30 0.08 16 20 C -0.22 -4.14 8.92 -26.73 -0.24 -4.38 16 21 C -0.17 -2.96 9.97 -26.73 -0.27 -3.22 16 22 H 0.05 0.63 6.40 -51.93 -0.33 0.30 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.72 7.16 -51.93 -0.37 0.34 16 27 H 0.38 7.13 8.84 -40.82 -0.36 6.77 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.11 1.63 6.00 -51.93 -0.31 1.32 16 30 H 0.11 2.48 4.75 -51.93 -0.25 2.23 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.10 1.84 7.67 -51.93 -0.40 1.44 16 LS Contribution 256.75 15.07 3.87 3.87 Total: -1.00 -31.88 256.75 -7.36 -39.24 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.33 Total: 8.39 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.20 Total: -2.14 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.76 Total: -50.99 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.08 Total: -14.97 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.88 -7.36 -39.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.037 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds