Wall clock time and date at job start Mon Mar 30 2020 03:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.59504 * 2 1 4 4 C 1.52988 * 109.59341 * 120.45090 * 2 1 3 5 5 N 1.46010 * 110.04072 * 170.06943 * 4 2 1 6 6 C 1.33715 * 122.92961 * 341.83739 * 5 4 2 7 7 O 1.21280 * 118.62681 * 181.69058 * 6 5 4 8 8 C 1.50262 * 122.75136 * 1.69130 * 6 5 4 9 9 H 1.08999 * 109.38707 * 222.64465 * 8 6 5 10 10 C 1.50697 * 109.38556 * 102.95297 * 8 6 5 11 11 H 1.08003 * 119.99940 * 239.48664 * 10 8 6 12 12 C 1.37876 * 120.00291 * 59.48426 * 10 8 6 13 13 N 1.31512 * 119.99632 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00097 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47318 * 59.99897 * 14 12 10 16 16 H 1.48499 * 109.46814 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.46915 * 299.99834 * 14 12 10 18 18 N 1.46909 * 109.97623 * 342.79608 * 8 6 5 19 19 C 1.46890 * 111.00146 * 286.93196 * 18 8 6 20 20 C 1.53000 * 117.50145 * 6.51429 * 19 18 8 21 21 C 1.52997 * 60.00347 * 252.51152 * 20 19 18 22 22 H 1.09001 * 109.47037 * 180.30139 * 1 2 3 23 23 H 1.08997 * 109.47612 * 300.30541 * 1 2 3 24 24 H 1.09004 * 109.46640 * 60.30472 * 1 2 3 25 25 H 1.08998 * 109.37410 * 290.24372 * 4 2 1 26 26 H 1.09002 * 109.36767 * 50.00921 * 4 2 1 27 27 H 0.97002 * 118.53401 * 161.82161 * 5 4 2 28 28 H 0.96998 * 119.99901 * 180.02562 * 13 12 10 29 29 H 1.09004 * 115.56595 * 152.20198 * 19 18 8 30 30 H 1.09002 * 117.49696 * 0.02562 * 20 19 18 31 31 H 1.09002 * 117.50343 * 145.02257 * 20 19 18 32 32 H 1.08999 * 117.49685 * 252.51237 * 21 20 19 33 33 H 1.08997 * 117.50044 * 107.48590 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0430 -0.7304 1.2425 5 7 3.4837 -0.9436 1.1384 6 6 4.1472 -0.8719 -0.0203 7 8 5.3396 -1.0935 -0.0217 8 6 3.4774 -0.5283 -1.3207 9 1 3.8536 -1.1841 -2.1059 10 6 3.7838 0.9033 -1.6782 11 1 2.9793 1.6133 -1.8009 12 6 5.0912 1.3067 -1.8486 13 7 6.0709 0.4422 -1.6986 14 14 5.4710 3.0814 -2.2910 15 1 4.9546 3.9784 -1.2261 16 1 6.9403 3.2567 -2.4159 17 1 4.8200 3.4198 -3.5820 18 7 2.0236 -0.6997 -1.1971 19 6 1.6625 -2.1230 -1.1614 20 6 2.8038 -3.1402 -1.0997 21 6 2.0008 -2.9689 -2.3907 22 1 -0.3633 -1.0277 0.0054 23 1 -0.3634 0.5185 0.8872 24 1 -0.3633 0.5091 -0.8928 25 1 1.8291 -0.1319 2.1279 26 1 1.5416 -1.6945 1.3278 27 1 3.9817 -1.1461 1.9458 28 1 6.9907 0.7261 -1.8180 29 1 0.7455 -2.3623 -0.6227 30 1 3.8226 -2.7531 -1.0852 31 1 2.6377 -4.0485 -0.5205 32 1 1.3064 -3.7645 -2.6608 33 1 2.4914 -2.4691 -3.2259 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219376915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:24 Heat of formation + Delta-G solvation = -5.619265 kcal Electronic energy + Delta-G solvation = -16729.427018 eV Core-core repulsion = 14176.811188 eV Total energy + Delta-G solvation = -2552.615830 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.66947 -38.51392 -36.61897 -35.13125 -33.68071 -32.05502 -28.37913 -26.80581 -25.29757 -23.23377 -23.03562 -22.00815 -19.67679 -18.08975 -17.68219 -17.59223 -16.61288 -16.46528 -16.18404 -15.20400 -14.77090 -14.61473 -13.92791 -13.75488 -13.71584 -13.30087 -12.91982 -12.75010 -12.53946 -12.49873 -12.27842 -11.93528 -11.77138 -11.53930 -11.31594 -11.08182 -10.64532 -10.49806 -9.67496 -8.71450 -8.03988 -6.28968 1.38256 1.41471 1.49233 2.28845 2.42133 2.68885 2.89849 3.19310 3.31181 3.91100 4.01544 4.08121 4.21659 4.33181 4.53180 4.54560 4.62238 4.78224 4.81422 4.86902 5.04391 5.14961 5.20839 5.31700 5.35159 5.46784 5.62442 5.93596 6.17811 6.33922 6.57644 6.59882 6.93910 7.38068 7.90309 8.90742 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.012041 C = 0.011216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.643552 B = 2324.779264 C = 2495.750936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.062 3.938 3 H 0.069 0.931 4 C 0.090 3.910 5 N -0.739 5.739 6 C 0.492 3.508 7 O -0.566 6.566 8 C 0.219 3.781 9 H 0.027 0.973 10 C -0.540 4.540 11 H 0.071 0.929 12 C 0.006 3.994 13 N -0.868 5.868 14 Si 0.961 3.039 15 H -0.268 1.268 16 H -0.290 1.290 17 H -0.263 1.263 18 N -0.498 5.498 19 C 0.025 3.975 20 C -0.233 4.233 21 C -0.166 4.166 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.384 0.616 28 H 0.254 0.746 29 H 0.150 0.850 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 -3.176 5.196 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.047 4.047 3 H 0.088 0.912 4 C -0.035 4.035 5 N -0.393 5.393 6 C 0.279 3.721 7 O -0.442 6.442 8 C 0.108 3.892 9 H 0.044 0.956 10 C -0.578 4.578 11 H 0.089 0.911 12 C -0.198 4.198 13 N -0.503 5.503 14 Si 0.786 3.214 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.188 1.188 18 N -0.220 5.220 19 C -0.084 4.084 20 C -0.272 4.272 21 C -0.204 4.204 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.219 0.781 28 H 0.063 0.937 29 H 0.167 0.833 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.710 -3.042 4.543 13.836 hybrid contribution 1.708 0.425 0.647 1.875 sum -11.002 -2.617 5.190 12.443 Atomic orbital electron populations 1.21713 0.90471 1.03145 1.03018 1.22113 0.97814 0.97941 0.86812 0.91234 1.22194 0.79836 1.01188 1.00297 1.45764 1.09924 1.74428 1.09198 1.22079 0.87855 0.74192 0.87941 1.90663 1.17199 1.49224 1.87147 1.19161 0.83321 0.97420 0.89250 0.95574 1.21003 0.92383 0.94452 1.49937 0.91091 1.26033 0.96475 1.02017 0.95282 1.70517 0.99235 1.35297 1.45231 0.85571 0.76698 0.79814 0.79340 1.19332 1.21562 1.18752 1.62411 1.12669 1.09019 1.37945 1.22900 0.98522 0.85215 1.01760 1.23488 0.97117 1.03036 1.03566 1.23064 1.03170 1.02667 0.91471 0.90994 0.89810 0.92135 0.88964 0.90376 0.78140 0.93654 0.83252 0.92326 0.87401 0.85355 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.17 71.98 0.66 -2.13 16 2 C 0.06 2.03 2.72 44.86 0.12 2.15 16 3 H 0.07 2.71 6.89 -2.38 -0.02 2.70 16 4 C 0.09 2.63 5.97 86.47 0.52 3.14 16 5 N -0.74 -29.45 5.51 -466.07 -2.57 -32.02 16 6 C 0.49 25.54 4.23 87.68 0.37 25.91 16 7 O -0.57 -35.18 14.90 -3.03 -0.05 -35.22 16 8 C 0.22 11.39 1.69 43.28 0.07 11.46 16 9 H 0.03 1.59 6.01 -2.39 -0.01 1.57 16 10 C -0.54 -30.49 7.83 25.60 0.20 -30.29 16 11 H 0.07 3.88 7.41 -2.91 -0.02 3.86 16 12 C 0.01 0.36 5.30 84.65 0.45 0.81 16 13 N -0.87 -55.16 10.47 21.45 0.22 -54.94 16 14 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 18 N -0.50 -19.94 4.70 -829.79 -3.90 -23.84 16 19 C 0.03 0.83 4.36 44.92 0.20 1.02 16 20 C -0.23 -8.47 8.92 30.59 0.27 -8.20 16 21 C -0.17 -5.43 9.97 30.60 0.30 -5.13 16 22 H 0.07 1.32 6.40 -2.39 -0.02 1.31 16 23 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.08 1.90 7.16 -2.39 -0.02 1.88 16 27 H 0.38 14.24 8.84 -92.71 -0.82 13.42 16 28 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.15 3.68 6.00 -2.38 -0.01 3.67 16 30 H 0.06 2.80 4.75 -2.39 -0.01 2.79 16 31 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.07 2.62 7.67 -2.39 -0.02 2.60 16 Total: -1.00 -74.58 256.75 -0.79 -75.37 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.30 Total: 24.46 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 3.16 Total: -1.25 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -6.24 Total: -110.81 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.05 Total: -35.22 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.58 -0.79 -75.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219376915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.751 kcal (2) G-P(sol) polarization free energy of solvation -74.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds