Wall clock time and date at job start Mon Mar 30 2020 03:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99962 * 2 1 4 4 N 1.46906 * 109.46953 * 125.00172 * 3 2 1 5 5 C 1.46897 * 110.99654 * 293.95429 * 4 3 2 6 6 H 1.08996 * 109.38957 * 53.61800 * 5 4 3 7 7 C 1.50694 * 109.38780 * 293.81883 * 5 4 3 8 8 H 1.08002 * 120.00179 * 0.02562 * 7 5 4 9 9 C 1.37879 * 120.00472 * 180.02562 * 7 5 4 10 10 N 1.31514 * 119.99350 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 120.00608 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47339 * 179.97438 * 11 9 7 13 13 H 1.48493 * 109.47239 * 300.00306 * 11 9 7 14 14 H 1.48504 * 109.46636 * 59.99865 * 11 9 7 15 15 C 1.50263 * 109.97616 * 173.66644 * 5 4 3 16 16 O 1.21283 * 118.62608 * 162.79746 * 15 5 4 17 17 N 1.33718 * 122.74969 * 342.79766 * 15 5 4 18 18 C 1.46013 * 122.92846 * 1.68517 * 17 15 5 19 19 C 1.47195 * 110.99808 * 56.84498 * 4 3 2 20 20 H 1.08996 * 109.59097 * 287.40787 * 19 4 3 21 21 C 1.52994 * 109.59307 * 47.71006 * 19 4 3 22 22 H 1.07993 * 120.00584 * 179.97438 * 1 2 3 23 23 H 1.08009 * 120.00116 * 359.97438 * 1 2 3 24 24 H 1.07995 * 120.00210 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47225 * 5.00366 * 3 2 1 26 26 H 1.08999 * 109.46944 * 245.00242 * 3 2 1 27 27 H 0.97005 * 119.99661 * 179.97438 * 10 9 7 28 28 H 0.96995 * 118.53345 * 181.68831 * 17 15 5 29 29 H 1.08998 * 109.37571 * 221.66993 * 18 17 15 30 30 H 1.08992 * 109.27958 * 101.95526 * 18 17 15 31 31 H 1.09001 * 109.47702 * 59.99800 * 21 19 4 32 32 H 1.09007 * 109.47090 * 180.02562 * 21 19 4 33 33 H 1.09000 * 109.47423 * 299.99260 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2712 1.3470 2.4120 6 1 1.5693 0.5136 2.4394 7 6 1.5139 2.6433 2.5421 8 1 1.5663 3.3807 1.7547 9 6 0.7542 2.8882 3.6663 10 7 0.6900 1.9901 4.6249 11 14 -0.1839 4.4954 3.8280 12 1 -0.9178 4.5126 5.1187 13 1 0.7706 5.6321 3.7855 14 1 -1.1509 4.6189 2.7076 15 6 3.2397 1.2184 3.5536 16 8 2.8693 1.5248 4.6671 17 7 4.4928 0.7803 3.3932 18 6 5.0474 0.4205 2.0913 19 6 3.9175 0.1849 1.0872 20 1 3.3801 -0.7265 1.3488 21 6 4.4986 0.0514 -0.3218 22 1 -0.5401 -0.9352 -0.0004 23 1 -0.5401 0.9354 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3586 2.1317 0.0896 26 1 2.6212 1.4026 -0.9314 27 1 0.1558 2.1624 5.4160 28 1 5.0586 0.6978 4.1767 29 1 5.6395 -0.4893 2.1894 30 1 5.6845 1.2301 1.7354 31 1 5.0400 0.9617 -0.5794 32 1 5.1801 -0.7988 -0.3548 33 1 3.6895 -0.1043 -1.0353 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219377402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:34 Heat of formation + Delta-G solvation = 17.983486 kcal Electronic energy + Delta-G solvation = -16437.827188 eV Core-core repulsion = 13886.234850 eV Total energy + Delta-G solvation = -2551.592338 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34190 -36.73038 -34.44707 -32.65701 -31.73611 -30.64191 -27.06907 -25.73252 -24.73460 -22.10880 -21.05098 -19.33385 -17.79829 -16.43700 -15.99304 -15.81073 -15.02393 -14.30301 -13.90327 -13.71911 -13.44807 -13.23260 -12.41747 -12.27446 -12.13672 -11.76244 -11.47749 -11.19216 -10.84424 -10.78350 -10.62967 -10.48843 -10.39187 -9.81981 -9.28655 -8.82300 -8.38029 -7.96070 -7.87906 -7.37351 -5.78706 -3.87483 2.81888 3.40439 3.45515 3.47250 4.29397 4.41491 4.57548 4.80639 5.25510 5.41809 5.48670 5.54185 5.62216 5.75943 5.81859 5.87872 6.07643 6.24055 6.28823 6.37652 6.46515 6.50900 6.73282 7.11920 7.17680 7.31863 7.52630 7.89057 8.05140 8.09334 8.41757 8.67707 9.06514 9.71164 9.93496 11.21343 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.012731 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.046327 B = 2198.749140 C = 2875.097485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.187 4.187 3 C 0.086 3.914 4 N -0.516 5.516 5 C 0.216 3.784 6 H 0.032 0.968 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.074 3.926 10 N -0.821 5.821 11 Si 0.894 3.106 12 H -0.289 1.289 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.504 3.496 16 O -0.488 6.488 17 N -0.753 5.753 18 C 0.132 3.868 19 C 0.058 3.942 20 H 0.040 0.960 21 C -0.144 4.144 22 H 0.085 0.915 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.256 0.744 28 H 0.375 0.625 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.387 -5.004 -9.156 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.207 4.207 3 C -0.042 4.042 4 N -0.241 5.241 5 C 0.107 3.893 6 H 0.049 0.951 7 C -0.570 4.570 8 H 0.084 0.916 9 C -0.135 4.135 10 N -0.454 5.454 11 Si 0.722 3.278 12 H -0.215 1.215 13 H -0.203 1.203 14 H -0.204 1.204 15 C 0.291 3.709 16 O -0.357 6.357 17 N -0.411 5.411 18 C 0.006 3.994 19 C -0.052 4.052 20 H 0.058 0.942 21 C -0.202 4.202 22 H 0.103 0.897 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.209 0.791 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.204 -4.402 -8.513 10.905 hybrid contribution -0.592 -0.106 0.581 0.837 sum 4.612 -4.508 -7.932 10.223 Atomic orbital electron populations 1.23766 0.96088 1.01309 1.00340 1.23646 0.96773 0.99808 1.00461 1.21355 0.94488 0.94669 0.93658 1.62879 1.18715 1.38421 1.04058 1.19308 0.89434 0.99434 0.81112 0.95133 1.20484 1.29115 1.01892 1.05519 0.91640 1.24951 0.96488 0.96631 0.95466 1.70238 1.35079 1.33541 1.06576 0.86654 0.79830 0.84344 0.77014 1.21479 1.20348 1.20358 1.21921 0.81114 0.75305 0.92522 1.90778 1.74183 1.45487 1.25245 1.46311 1.15164 1.71247 1.08354 1.21187 0.95170 0.98707 0.84291 1.21874 0.94460 0.93797 0.95053 0.94171 1.21878 1.00878 1.01665 0.95794 0.89658 0.88227 0.88532 0.89131 0.91247 0.93408 0.79094 0.92519 0.92649 0.91756 0.92801 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 14.32 29.02 0.42 -2.54 16 2 C -0.19 -3.18 7.05 -36.02 -0.25 -3.43 16 3 C 0.09 1.56 5.09 -4.97 -0.03 1.53 16 4 N -0.52 -10.59 4.56 -222.96 -1.02 -11.61 16 5 C 0.22 5.52 1.80 -70.23 -0.13 5.39 16 6 H 0.03 0.87 7.09 -51.93 -0.37 0.50 16 7 C -0.53 -14.92 7.85 -34.44 -0.27 -15.19 16 8 H 0.07 1.81 7.14 -52.49 -0.37 1.43 16 9 C 0.07 2.14 4.97 -17.82 -0.09 2.05 16 10 N -0.82 -25.18 10.23 55.43 0.57 -24.61 16 11 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.50 13.21 7.36 -11.67 -0.09 13.12 16 16 O -0.49 -14.83 13.74 5.56 0.08 -14.75 16 17 N -0.75 -15.53 5.52 -61.06 -0.34 -15.87 16 18 C 0.13 2.16 6.70 -4.31 -0.03 2.13 16 19 C 0.06 0.97 1.91 -67.56 -0.13 0.84 16 20 H 0.04 0.72 6.98 -51.93 -0.36 0.36 16 21 C -0.14 -1.84 8.44 37.15 0.31 -1.52 16 22 H 0.09 1.26 8.06 -52.49 -0.42 0.84 16 23 H 0.10 1.71 7.84 -52.48 -0.41 1.30 16 24 H 0.10 1.53 6.74 -52.49 -0.35 1.18 16 25 H 0.09 1.82 6.37 -51.93 -0.33 1.48 16 26 H 0.07 1.07 6.42 -51.93 -0.33 0.74 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.38 7.07 8.84 -40.82 -0.36 6.71 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.77 5.74 -51.93 -0.30 0.48 16 LS Contribution 262.48 15.07 3.96 3.96 Total: -1.00 -32.79 262.48 -6.50 -39.29 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.44 Total: 4.00 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -0.28 Total: 2.39 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.79 Total: -52.09 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.08 Total: -14.75 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.79 -6.50 -39.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.272 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds