Wall clock time and date at job start Mon Mar 30 2020 03:10:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30997 * 1
3 3 C 1.50703 * 119.99962 * 2 1
4 4 N 1.46906 * 109.46953 * 125.00172 * 3 2 1
5 5 C 1.46897 * 110.99654 * 293.95429 * 4 3 2
6 6 H 1.08996 * 109.38957 * 53.61800 * 5 4 3
7 7 C 1.50694 * 109.38780 * 293.81883 * 5 4 3
8 8 H 1.08002 * 120.00179 * 0.02562 * 7 5 4
9 9 C 1.37879 * 120.00472 * 180.02562 * 7 5 4
10 10 N 1.31514 * 119.99350 * 359.97438 * 9 7 5
11 11 Si 1.86798 * 120.00608 * 179.97438 * 9 7 5
12 12 H 1.48490 * 109.47339 * 179.97438 * 11 9 7
13 13 H 1.48493 * 109.47239 * 300.00306 * 11 9 7
14 14 H 1.48504 * 109.46636 * 59.99865 * 11 9 7
15 15 C 1.50263 * 109.97616 * 173.66644 * 5 4 3
16 16 O 1.21283 * 118.62608 * 162.79746 * 15 5 4
17 17 N 1.33718 * 122.74969 * 342.79766 * 15 5 4
18 18 C 1.46013 * 122.92846 * 1.68517 * 17 15 5
19 19 C 1.47195 * 110.99808 * 56.84498 * 4 3 2
20 20 H 1.08996 * 109.59097 * 287.40787 * 19 4 3
21 21 C 1.52994 * 109.59307 * 47.71006 * 19 4 3
22 22 H 1.07993 * 120.00584 * 179.97438 * 1 2 3
23 23 H 1.08009 * 120.00116 * 359.97438 * 1 2 3
24 24 H 1.07995 * 120.00210 * 180.02562 * 2 1 3
25 25 H 1.08999 * 109.47225 * 5.00366 * 3 2 1
26 26 H 1.08999 * 109.46944 * 245.00242 * 3 2 1
27 27 H 0.97005 * 119.99661 * 179.97438 * 10 9 7
28 28 H 0.96995 * 118.53345 * 181.68831 * 17 15 5
29 29 H 1.08998 * 109.37571 * 221.66993 * 18 17 15
30 30 H 1.08992 * 109.27958 * 101.95526 * 18 17 15
31 31 H 1.09001 * 109.47702 * 59.99800 * 21 19 4
32 32 H 1.09007 * 109.47090 * 180.02562 * 21 19 4
33 33 H 1.09000 * 109.47423 * 299.99260 * 21 19 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9963 1.3319 1.1345
5 6 2.2712 1.3470 2.4120
6 1 1.5693 0.5136 2.4394
7 6 1.5139 2.6433 2.5421
8 1 1.5663 3.3807 1.7547
9 6 0.7542 2.8882 3.6663
10 7 0.6900 1.9901 4.6249
11 14 -0.1839 4.4954 3.8280
12 1 -0.9178 4.5126 5.1187
13 1 0.7706 5.6321 3.7855
14 1 -1.1509 4.6189 2.7076
15 6 3.2397 1.2184 3.5536
16 8 2.8693 1.5248 4.6671
17 7 4.4928 0.7803 3.3932
18 6 5.0474 0.4205 2.0913
19 6 3.9175 0.1849 1.0872
20 1 3.3801 -0.7265 1.3488
21 6 4.4986 0.0514 -0.3218
22 1 -0.5401 -0.9352 -0.0004
23 1 -0.5401 0.9354 0.0004
24 1 1.8500 -0.9352 -0.0004
25 1 1.3586 2.1317 0.0896
26 1 2.6212 1.4026 -0.9314
27 1 0.1558 2.1624 5.4160
28 1 5.0586 0.6978 4.1767
29 1 5.6395 -0.4893 2.1894
30 1 5.6845 1.2301 1.7354
31 1 5.0400 0.9617 -0.5794
32 1 5.1801 -0.7988 -0.3548
33 1 3.6895 -0.1043 -1.0353
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219377402.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:34
Heat of formation + Delta-G solvation = 17.983486 kcal
Electronic energy + Delta-G solvation = -16437.827188 eV
Core-core repulsion = 13886.234850 eV
Total energy + Delta-G solvation = -2551.592338 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.34190 -36.73038 -34.44707 -32.65701 -31.73611 -30.64191 -27.06907 -25.73252
-24.73460 -22.10880 -21.05098 -19.33385 -17.79829 -16.43700 -15.99304 -15.81073
-15.02393 -14.30301 -13.90327 -13.71911 -13.44807 -13.23260 -12.41747 -12.27446
-12.13672 -11.76244 -11.47749 -11.19216 -10.84424 -10.78350 -10.62967 -10.48843
-10.39187 -9.81981 -9.28655 -8.82300 -8.38029 -7.96070 -7.87906 -7.37351
-5.78706 -3.87483 2.81888 3.40439 3.45515 3.47250 4.29397 4.41491
4.57548 4.80639 5.25510 5.41809 5.48670 5.54185 5.62216 5.75943
5.81859 5.87872 6.07643 6.24055 6.28823 6.37652 6.46515 6.50900
6.73282 7.11920 7.17680 7.31863 7.52630 7.89057 8.05140 8.09334
8.41757 8.67707 9.06514 9.71164 9.93496 11.21343
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.025704 B = 0.012731 C = 0.009736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1089.046327 B = 2198.749140 C = 2875.097485
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.187 4.187
3 C 0.086 3.914
4 N -0.516 5.516
5 C 0.216 3.784
6 H 0.032 0.968
7 C -0.532 4.532
8 H 0.065 0.935
9 C 0.074 3.926
10 N -0.821 5.821
11 Si 0.894 3.106
12 H -0.289 1.289
13 H -0.278 1.278
14 H -0.278 1.278
15 C 0.504 3.496
16 O -0.488 6.488
17 N -0.753 5.753
18 C 0.132 3.868
19 C 0.058 3.942
20 H 0.040 0.960
21 C -0.144 4.144
22 H 0.085 0.915
23 H 0.099 0.901
24 H 0.097 0.903
25 H 0.090 0.910
26 H 0.069 0.931
27 H 0.256 0.744
28 H 0.375 0.625
29 H 0.057 0.943
30 H 0.055 0.945
31 H 0.063 0.937
32 H 0.053 0.947
33 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.387 -5.004 -9.156 11.743
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.207 4.207
3 C -0.042 4.042
4 N -0.241 5.241
5 C 0.107 3.893
6 H 0.049 0.951
7 C -0.570 4.570
8 H 0.084 0.916
9 C -0.135 4.135
10 N -0.454 5.454
11 Si 0.722 3.278
12 H -0.215 1.215
13 H -0.203 1.203
14 H -0.204 1.204
15 C 0.291 3.709
16 O -0.357 6.357
17 N -0.411 5.411
18 C 0.006 3.994
19 C -0.052 4.052
20 H 0.058 0.942
21 C -0.202 4.202
22 H 0.103 0.897
23 H 0.118 0.882
24 H 0.115 0.885
25 H 0.109 0.891
26 H 0.088 0.912
27 H 0.066 0.934
28 H 0.209 0.791
29 H 0.075 0.925
30 H 0.074 0.926
31 H 0.082 0.918
32 H 0.072 0.928
33 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 5.204 -4.402 -8.513 10.905
hybrid contribution -0.592 -0.106 0.581 0.837
sum 4.612 -4.508 -7.932 10.223
Atomic orbital electron populations
1.23766 0.96088 1.01309 1.00340 1.23646 0.96773 0.99808 1.00461
1.21355 0.94488 0.94669 0.93658 1.62879 1.18715 1.38421 1.04058
1.19308 0.89434 0.99434 0.81112 0.95133 1.20484 1.29115 1.01892
1.05519 0.91640 1.24951 0.96488 0.96631 0.95466 1.70238 1.35079
1.33541 1.06576 0.86654 0.79830 0.84344 0.77014 1.21479 1.20348
1.20358 1.21921 0.81114 0.75305 0.92522 1.90778 1.74183 1.45487
1.25245 1.46311 1.15164 1.71247 1.08354 1.21187 0.95170 0.98707
0.84291 1.21874 0.94460 0.93797 0.95053 0.94171 1.21878 1.00878
1.01665 0.95794 0.89658 0.88227 0.88532 0.89131 0.91247 0.93408
0.79094 0.92519 0.92649 0.91756 0.92801 0.91924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.95 14.32 29.02 0.42 -2.54 16
2 C -0.19 -3.18 7.05 -36.02 -0.25 -3.43 16
3 C 0.09 1.56 5.09 -4.97 -0.03 1.53 16
4 N -0.52 -10.59 4.56 -222.96 -1.02 -11.61 16
5 C 0.22 5.52 1.80 -70.23 -0.13 5.39 16
6 H 0.03 0.87 7.09 -51.93 -0.37 0.50 16
7 C -0.53 -14.92 7.85 -34.44 -0.27 -15.19 16
8 H 0.07 1.81 7.14 -52.49 -0.37 1.43 16
9 C 0.07 2.14 4.97 -17.82 -0.09 2.05 16
10 N -0.82 -25.18 10.23 55.43 0.57 -24.61 16
11 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16
12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16
13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
15 C 0.50 13.21 7.36 -11.67 -0.09 13.12 16
16 O -0.49 -14.83 13.74 5.56 0.08 -14.75 16
17 N -0.75 -15.53 5.52 -61.06 -0.34 -15.87 16
18 C 0.13 2.16 6.70 -4.31 -0.03 2.13 16
19 C 0.06 0.97 1.91 -67.56 -0.13 0.84 16
20 H 0.04 0.72 6.98 -51.93 -0.36 0.36 16
21 C -0.14 -1.84 8.44 37.15 0.31 -1.52 16
22 H 0.09 1.26 8.06 -52.49 -0.42 0.84 16
23 H 0.10 1.71 7.84 -52.48 -0.41 1.30 16
24 H 0.10 1.53 6.74 -52.49 -0.35 1.18 16
25 H 0.09 1.82 6.37 -51.93 -0.33 1.48 16
26 H 0.07 1.07 6.42 -51.93 -0.33 0.74 16
27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
28 H 0.38 7.07 8.84 -40.82 -0.36 6.71 16
29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
30 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16
31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16
32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
33 H 0.06 0.77 5.74 -51.93 -0.30 0.48 16
LS Contribution 262.48 15.07 3.96 3.96
Total: -1.00 -32.79 262.48 -6.50 -39.29
By element:
Atomic # 1 Polarization: 8.44 SS G_CDS: -4.44 Total: 4.00 kcal
Atomic # 6 Polarization: 2.67 SS G_CDS: -0.28 Total: 2.39 kcal
Atomic # 7 Polarization: -51.30 SS G_CDS: -0.79 Total: -52.09 kcal
Atomic # 8 Polarization: -14.83 SS G_CDS: 0.08 Total: -14.75 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -32.79 -6.50 -39.29 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219377402.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.272 kcal
(2) G-P(sol) polarization free energy of solvation -32.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds