Wall clock time and date at job start Mon Mar 30 2020 03:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99962 * 2 1 4 4 N 1.46906 * 109.46953 * 125.00172 * 3 2 1 5 5 C 1.46897 * 110.99654 * 293.95429 * 4 3 2 6 6 H 1.08996 * 109.38957 * 53.61800 * 5 4 3 7 7 C 1.50694 * 109.38780 * 293.81883 * 5 4 3 8 8 H 1.08002 * 120.00179 * 0.02562 * 7 5 4 9 9 C 1.37879 * 120.00472 * 180.02562 * 7 5 4 10 10 N 1.31514 * 119.99350 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 120.00608 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47339 * 179.97438 * 11 9 7 13 13 H 1.48493 * 109.47239 * 300.00306 * 11 9 7 14 14 H 1.48504 * 109.46636 * 59.99865 * 11 9 7 15 15 C 1.50263 * 109.97616 * 173.66644 * 5 4 3 16 16 O 1.21283 * 118.62608 * 162.79746 * 15 5 4 17 17 N 1.33718 * 122.74969 * 342.79766 * 15 5 4 18 18 C 1.46013 * 122.92846 * 1.68517 * 17 15 5 19 19 C 1.47195 * 110.99808 * 56.84498 * 4 3 2 20 20 H 1.08996 * 109.59097 * 287.40787 * 19 4 3 21 21 C 1.52994 * 109.59307 * 47.71006 * 19 4 3 22 22 H 1.07993 * 120.00584 * 179.97438 * 1 2 3 23 23 H 1.08009 * 120.00116 * 359.97438 * 1 2 3 24 24 H 1.07995 * 120.00210 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47225 * 5.00366 * 3 2 1 26 26 H 1.08999 * 109.46944 * 245.00242 * 3 2 1 27 27 H 0.97005 * 119.99661 * 179.97438 * 10 9 7 28 28 H 0.96995 * 118.53345 * 181.68831 * 17 15 5 29 29 H 1.08998 * 109.37571 * 221.66993 * 18 17 15 30 30 H 1.08992 * 109.27958 * 101.95526 * 18 17 15 31 31 H 1.09001 * 109.47702 * 59.99800 * 21 19 4 32 32 H 1.09007 * 109.47090 * 180.02562 * 21 19 4 33 33 H 1.09000 * 109.47423 * 299.99260 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2712 1.3470 2.4120 6 1 1.5693 0.5136 2.4394 7 6 1.5139 2.6433 2.5421 8 1 1.5663 3.3807 1.7547 9 6 0.7542 2.8882 3.6663 10 7 0.6900 1.9901 4.6249 11 14 -0.1839 4.4954 3.8280 12 1 -0.9178 4.5126 5.1187 13 1 0.7706 5.6321 3.7855 14 1 -1.1509 4.6189 2.7076 15 6 3.2397 1.2184 3.5536 16 8 2.8693 1.5248 4.6671 17 7 4.4928 0.7803 3.3932 18 6 5.0474 0.4205 2.0913 19 6 3.9175 0.1849 1.0872 20 1 3.3801 -0.7265 1.3488 21 6 4.4986 0.0514 -0.3218 22 1 -0.5401 -0.9352 -0.0004 23 1 -0.5401 0.9354 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3586 2.1317 0.0896 26 1 2.6212 1.4026 -0.9314 27 1 0.1558 2.1624 5.4160 28 1 5.0586 0.6978 4.1767 29 1 5.6395 -0.4893 2.1894 30 1 5.6845 1.2301 1.7354 31 1 5.0400 0.9617 -0.5794 32 1 5.1801 -0.7988 -0.3548 33 1 3.6895 -0.1043 -1.0353 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219377402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:34 Heat of formation + Delta-G solvation = -7.730941 kcal Electronic energy + Delta-G solvation = -16438.942249 eV Core-core repulsion = 13886.234850 eV Total energy + Delta-G solvation = -2552.707399 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04276 -38.50274 -36.09874 -34.58991 -33.32582 -32.27577 -28.81389 -27.16297 -26.48232 -23.88249 -22.55547 -20.86991 -19.37746 -18.40085 -17.74407 -17.50168 -16.44992 -16.33076 -15.55341 -15.50337 -14.99444 -14.75896 -14.07904 -13.96865 -13.56753 -13.21199 -13.13950 -12.77250 -12.64196 -12.38778 -12.16994 -11.96384 -11.89910 -11.73416 -11.24188 -10.51439 -10.24802 -9.95612 -9.62279 -9.00955 -7.96251 -6.10094 1.39691 1.43964 1.47029 1.50261 2.28648 2.52693 2.79035 3.25742 3.35680 3.97193 4.09740 4.21016 4.32289 4.44807 4.47235 4.75171 4.83270 4.91481 5.01046 5.07410 5.11613 5.19847 5.22682 5.49245 5.68938 5.76521 5.89509 5.93836 6.27562 6.39259 6.62704 6.72359 6.99738 7.52471 7.99223 9.02982 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.012731 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.046327 B = 2198.749140 C = 2875.097485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.190 4.190 3 C 0.086 3.914 4 N -0.523 5.523 5 C 0.223 3.777 6 H -0.003 1.003 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.021 3.979 10 N -0.856 5.856 11 Si 0.954 3.046 12 H -0.290 1.290 13 H -0.277 1.277 14 H -0.262 1.262 15 C 0.495 3.505 16 O -0.543 6.543 17 N -0.742 5.742 18 C 0.124 3.876 19 C 0.052 3.948 20 H 0.030 0.970 21 C -0.134 4.134 22 H 0.104 0.896 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.249 0.751 28 H 0.386 0.614 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 -5.468 -11.066 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.210 4.210 3 C -0.041 4.041 4 N -0.248 5.248 5 C 0.113 3.887 6 H 0.015 0.985 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.185 4.185 10 N -0.490 5.490 11 Si 0.780 3.220 12 H -0.216 1.216 13 H -0.203 1.203 14 H -0.186 1.186 15 C 0.282 3.718 16 O -0.416 6.416 17 N -0.398 5.398 18 C 0.000 4.000 19 C -0.057 4.057 20 H 0.048 0.952 21 C -0.192 4.192 22 H 0.123 0.877 23 H 0.106 0.894 24 H 0.131 0.869 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.058 0.942 28 H 0.221 0.779 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.727 -4.885 -10.491 13.386 hybrid contribution -0.957 -0.024 1.093 1.453 sum 5.770 -4.909 -9.399 12.072 Atomic orbital electron populations 1.23908 0.96356 1.01756 1.00158 1.23683 0.96877 0.99867 1.00565 1.21366 0.94304 0.94350 0.94081 1.62808 1.18861 1.40747 1.02361 1.18942 0.89187 0.96923 0.83676 0.98549 1.20814 1.29186 1.02818 1.05097 0.91938 1.25769 0.97561 0.99810 0.95341 1.70431 1.36172 1.35481 1.06962 0.85695 0.78755 0.80307 0.77280 1.21565 1.20266 1.18612 1.21916 0.82829 0.75217 0.91818 1.90742 1.75931 1.48080 1.26893 1.46051 1.13591 1.69368 1.10799 1.21609 0.95318 1.01269 0.81789 1.22106 0.93742 0.91808 0.98053 0.95198 1.21830 1.01469 1.03332 0.92547 0.87730 0.89409 0.86905 0.91866 0.87952 0.94164 0.77924 0.88106 0.91153 0.91202 0.89661 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.04 14.32 67.78 0.97 -5.07 16 2 C -0.19 -6.24 7.05 25.65 0.18 -6.06 16 3 C 0.09 3.02 5.09 85.56 0.44 3.46 16 4 N -0.52 -20.88 4.56 -859.31 -3.92 -24.80 16 5 C 0.22 11.55 1.80 43.28 0.08 11.63 16 6 H 0.00 -0.15 7.09 -2.39 -0.02 -0.17 16 7 C -0.54 -30.98 7.85 25.60 0.20 -30.78 16 8 H 0.06 3.51 7.14 -2.91 -0.02 3.49 16 9 C 0.02 1.22 4.97 84.66 0.42 1.64 16 10 N -0.86 -54.39 10.23 21.45 0.22 -54.17 16 11 Si 0.95 46.57 29.54 68.60 2.03 48.60 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 14 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 15 C 0.50 26.25 7.36 87.68 0.65 26.90 16 16 O -0.54 -34.02 13.74 -3.04 -0.04 -34.06 16 17 N -0.74 -29.66 5.52 -466.08 -2.57 -32.23 16 18 C 0.12 3.62 6.70 86.47 0.58 4.20 16 19 C 0.05 1.60 1.91 44.85 0.09 1.68 16 20 H 0.03 1.00 6.98 -2.39 -0.02 0.98 16 21 C -0.13 -2.80 8.44 71.98 0.61 -2.19 16 22 H 0.10 2.98 8.06 -2.91 -0.02 2.96 16 23 H 0.09 3.06 7.84 -2.91 -0.02 3.04 16 24 H 0.11 3.32 6.74 -2.91 -0.02 3.30 16 25 H 0.06 2.55 6.37 -2.39 -0.02 2.53 16 26 H 0.10 2.88 6.42 -2.39 -0.02 2.87 16 27 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 28 H 0.39 14.04 8.84 -92.71 -0.82 13.22 16 29 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.07 1.37 5.74 -2.39 -0.01 1.35 16 Total: -1.00 -73.84 262.48 0.21 -73.64 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.29 Total: 17.63 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.21 Total: 5.40 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -6.27 Total: -111.20 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.04 Total: -34.06 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.84 0.21 -73.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.905 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds