Wall clock time and date at job start Mon Mar 30 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.37957 * 2 1 4 4 C 1.52983 * 109.37404 * 240.34364 * 2 1 3 5 5 N 1.47151 * 108.64206 * 290.14777 * 4 2 1 6 6 C 1.46906 * 111.06521 * 54.28574 * 5 4 2 7 7 C 1.53001 * 117.49806 * 126.24243 * 6 5 4 8 8 C 1.53001 * 117.49862 * 57.58084 * 6 5 4 9 9 C 1.46892 * 110.19764 * 290.85955 * 5 4 2 10 10 H 1.09007 * 109.38378 * 290.34268 * 9 5 4 11 11 C 1.50701 * 109.38645 * 170.55689 * 9 5 4 12 12 H 1.08005 * 119.99755 * 274.44748 * 11 9 5 13 13 C 1.37876 * 120.00369 * 94.45310 * 11 9 5 14 14 N 1.31516 * 119.99631 * 354.62004 * 13 11 9 15 15 Si 1.86796 * 120.00091 * 174.62898 * 13 11 9 16 16 H 1.48492 * 109.47391 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47008 * 239.99238 * 15 13 11 18 18 H 1.48502 * 109.47053 * 119.99655 * 15 13 11 19 19 C 1.50251 * 109.90078 * 50.44992 * 9 5 4 20 20 O 1.21275 * 118.62840 * 162.72718 * 19 9 5 21 21 N 1.33723 * 122.74922 * 342.74912 * 19 9 5 22 22 H 1.09003 * 109.47240 * 323.92876 * 1 2 3 23 23 H 1.08999 * 109.47202 * 83.92498 * 1 2 3 24 24 H 1.09004 * 109.47731 * 203.93273 * 1 2 3 25 25 H 1.08996 * 109.59280 * 49.89583 * 4 2 1 26 26 H 1.09001 * 109.59190 * 170.19135 * 4 2 1 27 27 H 1.09004 * 115.54891 * 271.91801 * 6 5 4 28 28 H 1.08999 * 117.49727 * 359.97438 * 7 6 5 29 29 H 1.09002 * 117.49686 * 145.01989 * 7 6 5 30 30 H 1.08998 * 117.49819 * 214.97476 * 8 6 5 31 31 H 1.08995 * 117.50158 * 359.97438 * 8 6 5 32 32 H 0.97000 * 120.00296 * 4.92473 * 14 13 11 33 33 H 0.96997 * 118.53808 * 181.66945 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8916 1.0282 0.0000 4 6 2.0374 -0.7141 -1.2542 5 7 1.7404 -2.1500 -1.1305 6 6 0.3134 -2.3728 -0.8621 7 6 -0.4404 -3.3246 -1.7932 8 6 -0.6910 -1.8165 -1.8734 9 6 2.5737 -2.7517 -0.0811 10 1 3.6112 -2.7793 -0.4143 11 6 2.0985 -4.1557 0.1913 12 1 1.2918 -4.3269 0.8888 13 6 2.6936 -5.2216 -0.4496 14 7 3.6022 -5.0077 -1.3760 15 14 2.2090 -6.9692 -0.0023 16 1 1.1737 -6.9390 1.0617 17 1 3.4026 -7.7033 0.4897 18 1 1.6662 -7.6550 -1.2024 19 6 2.4758 -1.9388 1.1787 20 8 2.8297 -2.4419 2.2238 21 7 2.0142 -0.6838 1.1957 22 1 -0.3634 0.8307 0.6051 23 1 -0.3633 0.1088 -1.0219 24 1 -0.3635 -0.9393 0.4169 25 1 1.5347 -0.3107 -2.1331 26 1 3.1133 -0.5666 -1.3486 27 1 0.0259 -2.3645 0.1893 28 1 0.1224 -3.7850 -2.6051 29 1 -1.2240 -3.9422 -1.3543 30 1 -1.6394 -1.4429 -1.4874 31 1 -0.2930 -1.2849 -2.7377 32 1 3.9057 -4.1046 -1.5585 33 1 2.0004 -0.2066 2.0401 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219377502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:09 Heat of formation + Delta-G solvation = 17.144402 kcal Electronic energy + Delta-G solvation = -16711.148935 eV Core-core repulsion = 14159.520212 eV Total energy + Delta-G solvation = -2551.628724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.23711 -37.32595 -35.08626 -33.86009 -31.69830 -30.32008 -27.22897 -24.96645 -23.50273 -22.37709 -20.96627 -20.44965 -18.35048 -17.20842 -16.45596 -15.78530 -15.10910 -14.67565 -14.13111 -13.86677 -13.70973 -13.20128 -12.62707 -12.39585 -11.97888 -11.71166 -11.53974 -11.18723 -10.93767 -10.75640 -10.60874 -10.48011 -10.10003 -9.71322 -9.44306 -9.02341 -8.70859 -8.50683 -8.42162 -7.20823 -6.41934 -4.12307 3.45351 3.49672 3.60131 3.65266 3.87452 4.48352 4.53915 4.60509 5.09573 5.24892 5.42832 5.43487 5.58445 5.67650 5.73829 5.90398 5.97269 6.00277 6.08299 6.11883 6.20520 6.39734 6.56480 6.66871 6.79055 6.91716 7.27606 7.54729 7.91518 8.17456 8.23732 8.40492 8.81528 9.13059 9.59599 10.99154 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.012714 C = 0.010462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.783539 B = 2201.736804 C = 2675.748004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.110 3.890 3 H 0.070 0.930 4 C 0.035 3.965 5 N -0.493 5.493 6 C 0.056 3.944 7 C -0.155 4.155 8 C -0.197 4.197 9 C 0.187 3.813 10 H 0.083 0.917 11 C -0.560 4.560 12 H 0.052 0.948 13 C 0.037 3.963 14 N -0.895 5.895 15 Si 1.076 2.924 16 H -0.289 1.289 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.491 3.509 20 O -0.550 6.550 21 N -0.736 5.736 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.273 0.727 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 9.302 -1.444 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.002 3.998 3 H 0.089 0.911 4 C -0.094 4.094 5 N -0.218 5.218 6 C -0.052 4.052 7 C -0.193 4.193 8 C -0.235 4.235 9 C 0.080 3.920 10 H 0.100 0.900 11 C -0.599 4.599 12 H 0.071 0.929 13 C -0.170 4.170 14 N -0.530 5.530 15 Si 0.904 3.096 16 H -0.215 1.215 17 H -0.212 1.212 18 H -0.213 1.213 19 C 0.278 3.722 20 O -0.426 6.426 21 N -0.390 5.390 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.103 7.075 -1.961 9.547 hybrid contribution -0.495 2.491 1.521 2.960 sum -6.599 9.566 -0.440 11.630 Atomic orbital electron populations 1.23052 0.95628 1.02573 1.02771 1.21551 0.94534 0.96268 0.87412 0.91149 1.22603 1.00856 0.90787 0.95121 1.63181 1.03069 1.08304 1.47216 1.22034 0.86843 1.02900 0.93436 1.22983 1.01809 0.91198 1.03290 1.23240 0.99801 0.98108 1.02317 1.19705 0.96414 0.93700 0.82230 0.89972 1.21379 1.21460 0.88546 1.28514 0.92933 1.25791 0.94183 1.04473 0.92578 1.70717 1.29125 1.25479 1.27639 0.83452 0.76002 0.74389 0.75772 1.21457 1.21245 1.21266 1.22510 0.74826 0.80501 0.94381 1.90591 1.48676 1.69233 1.34083 1.46070 1.66872 1.15368 1.10699 0.93994 0.90606 0.90390 0.90121 0.90987 0.89976 0.88536 0.90007 0.89819 0.89235 0.91464 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 7.59 37.15 0.28 -2.19 16 2 C 0.11 1.64 3.78 -68.21 -0.26 1.38 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.04 0.58 5.46 -3.70 -0.02 0.56 16 5 N -0.49 -10.29 5.05 -221.55 -1.12 -11.41 16 6 C 0.06 1.08 1.68 -67.71 -0.11 0.97 16 7 C -0.15 -2.87 10.43 -26.69 -0.28 -3.15 16 8 C -0.20 -3.01 6.81 -26.69 -0.18 -3.19 16 9 C 0.19 4.63 2.28 -70.24 -0.16 4.47 16 10 H 0.08 2.22 6.42 -51.92 -0.33 1.88 16 11 C -0.56 -15.44 6.67 -34.44 -0.23 -15.67 16 12 H 0.05 1.52 7.82 -52.48 -0.41 1.11 16 13 C 0.04 1.04 5.45 -17.82 -0.10 0.95 16 14 N -0.89 -26.13 13.63 55.43 0.76 -25.37 16 15 Si 1.08 25.46 29.91 -169.99 -5.08 20.38 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.49 11.59 6.63 -11.67 -0.08 11.52 16 20 O -0.55 -15.12 17.27 5.56 0.10 -15.03 16 21 N -0.74 -13.47 5.07 -54.55 -0.28 -13.75 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 0.94 5.35 -51.93 -0.28 0.66 16 24 H 0.08 1.24 4.67 -51.93 -0.24 1.00 16 25 H 0.08 1.16 6.95 -51.93 -0.36 0.80 16 26 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 27 H 0.08 1.73 5.62 -51.93 -0.29 1.44 16 28 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.11 7.79 -51.93 -0.40 0.70 16 31 H 0.09 1.30 7.43 -51.93 -0.39 0.92 16 32 H 0.27 7.95 6.56 -40.82 -0.27 7.68 16 33 H 0.38 6.33 8.84 -40.82 -0.36 5.97 16 LS Contribution 257.12 15.07 3.87 3.87 Total: -1.00 -31.22 257.12 -7.13 -38.35 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.24 Total: 7.29 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.13 Total: -4.34 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.64 Total: -50.53 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.10 Total: -15.03 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.22 -7.13 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.494 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds