Wall clock time and date at job start Mon Mar 30 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.37957 * 2 1 4 4 C 1.52983 * 109.37404 * 240.34364 * 2 1 3 5 5 N 1.47151 * 108.64206 * 290.14777 * 4 2 1 6 6 C 1.46906 * 111.06521 * 54.28574 * 5 4 2 7 7 C 1.53001 * 117.49806 * 126.24243 * 6 5 4 8 8 C 1.53001 * 117.49862 * 57.58084 * 6 5 4 9 9 C 1.46892 * 110.19764 * 290.85955 * 5 4 2 10 10 H 1.09007 * 109.38378 * 290.34268 * 9 5 4 11 11 C 1.50701 * 109.38645 * 170.55689 * 9 5 4 12 12 H 1.08005 * 119.99755 * 274.44748 * 11 9 5 13 13 C 1.37876 * 120.00369 * 94.45310 * 11 9 5 14 14 N 1.31516 * 119.99631 * 354.62004 * 13 11 9 15 15 Si 1.86796 * 120.00091 * 174.62898 * 13 11 9 16 16 H 1.48492 * 109.47391 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47008 * 239.99238 * 15 13 11 18 18 H 1.48502 * 109.47053 * 119.99655 * 15 13 11 19 19 C 1.50251 * 109.90078 * 50.44992 * 9 5 4 20 20 O 1.21275 * 118.62840 * 162.72718 * 19 9 5 21 21 N 1.33723 * 122.74922 * 342.74912 * 19 9 5 22 22 H 1.09003 * 109.47240 * 323.92876 * 1 2 3 23 23 H 1.08999 * 109.47202 * 83.92498 * 1 2 3 24 24 H 1.09004 * 109.47731 * 203.93273 * 1 2 3 25 25 H 1.08996 * 109.59280 * 49.89583 * 4 2 1 26 26 H 1.09001 * 109.59190 * 170.19135 * 4 2 1 27 27 H 1.09004 * 115.54891 * 271.91801 * 6 5 4 28 28 H 1.08999 * 117.49727 * 359.97438 * 7 6 5 29 29 H 1.09002 * 117.49686 * 145.01989 * 7 6 5 30 30 H 1.08998 * 117.49819 * 214.97476 * 8 6 5 31 31 H 1.08995 * 117.50158 * 359.97438 * 8 6 5 32 32 H 0.97000 * 120.00296 * 4.92473 * 14 13 11 33 33 H 0.96997 * 118.53808 * 181.66945 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8916 1.0282 0.0000 4 6 2.0374 -0.7141 -1.2542 5 7 1.7404 -2.1500 -1.1305 6 6 0.3134 -2.3728 -0.8621 7 6 -0.4404 -3.3246 -1.7932 8 6 -0.6910 -1.8165 -1.8734 9 6 2.5737 -2.7517 -0.0811 10 1 3.6112 -2.7793 -0.4143 11 6 2.0985 -4.1557 0.1913 12 1 1.2918 -4.3269 0.8888 13 6 2.6936 -5.2216 -0.4496 14 7 3.6022 -5.0077 -1.3760 15 14 2.2090 -6.9692 -0.0023 16 1 1.1737 -6.9390 1.0617 17 1 3.4026 -7.7033 0.4897 18 1 1.6662 -7.6550 -1.2024 19 6 2.4758 -1.9388 1.1787 20 8 2.8297 -2.4419 2.2238 21 7 2.0142 -0.6838 1.1957 22 1 -0.3634 0.8307 0.6051 23 1 -0.3633 0.1088 -1.0219 24 1 -0.3635 -0.9393 0.4169 25 1 1.5347 -0.3107 -2.1331 26 1 3.1133 -0.5666 -1.3486 27 1 0.0259 -2.3645 0.1893 28 1 0.1224 -3.7850 -2.6051 29 1 -1.2240 -3.9422 -1.3543 30 1 -1.6394 -1.4429 -1.4874 31 1 -0.2930 -1.2849 -2.7377 32 1 3.9057 -4.1046 -1.5585 33 1 2.0004 -0.2066 2.0401 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219377502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:09 Heat of formation + Delta-G solvation = -7.606879 kcal Electronic energy + Delta-G solvation = -16712.222231 eV Core-core repulsion = 14159.520212 eV Total energy + Delta-G solvation = -2552.702020 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.85811 -39.04438 -36.61274 -35.74219 -33.48471 -31.83993 -28.88289 -26.50837 -25.42519 -23.88240 -22.44864 -21.94302 -20.07482 -18.85589 -18.24429 -17.42867 -16.74174 -16.41593 -15.72262 -15.49614 -15.41897 -14.83169 -14.12550 -13.94329 -13.68407 -13.29854 -13.01552 -12.66091 -12.45147 -12.36925 -12.24113 -11.96841 -11.96006 -11.39240 -10.94391 -10.76012 -10.63312 -10.48296 -10.07314 -8.81208 -8.62812 -6.31349 1.51010 1.60068 1.72621 1.77601 2.32278 2.56688 2.94935 3.11088 3.41929 3.86375 3.98222 4.06564 4.17323 4.27605 4.38164 4.56511 4.58467 4.75144 4.82476 4.89007 4.96263 4.96561 5.06295 5.26570 5.41259 5.46129 5.52690 5.94028 6.09117 6.26389 6.44180 6.54119 6.67978 7.32532 7.47378 8.79218 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.012714 C = 0.010462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.783539 B = 2201.736804 C = 2675.748004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 H 0.113 0.887 4 C 0.030 3.970 5 N -0.505 5.505 6 C 0.035 3.965 7 C -0.178 4.178 8 C -0.143 4.143 9 C 0.191 3.809 10 H 0.051 0.949 11 C -0.563 4.563 12 H 0.029 0.971 13 C -0.008 4.008 14 N -0.919 5.919 15 Si 1.113 2.887 16 H -0.282 1.282 17 H -0.281 1.281 18 H -0.272 1.272 19 C 0.489 3.511 20 O -0.602 6.602 21 N -0.717 5.717 22 H 0.066 0.934 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.115 0.885 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.262 0.738 33 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 11.513 -2.183 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.000 4.000 3 H 0.131 0.869 4 C -0.098 4.098 5 N -0.229 5.229 6 C -0.073 4.073 7 C -0.216 4.216 8 C -0.180 4.180 9 C 0.081 3.919 10 H 0.068 0.932 11 C -0.603 4.603 12 H 0.048 0.952 13 C -0.209 4.209 14 N -0.556 5.556 15 Si 0.936 3.064 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.276 3.724 20 O -0.482 6.482 21 N -0.369 5.369 22 H 0.085 0.915 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.133 0.867 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -8.007 9.356 -2.729 12.613 hybrid contribution 0.045 1.954 1.742 2.618 sum -7.962 11.310 -0.987 13.866 Atomic orbital electron populations 1.22948 0.93789 1.02294 1.04315 1.21884 0.95925 0.97415 0.84788 0.86899 1.22806 1.01258 0.88286 0.97492 1.62756 1.03681 1.11233 1.45241 1.21985 0.86473 1.05572 0.93300 1.22987 1.02188 0.93706 1.02744 1.23321 0.99227 0.95089 1.00403 1.19385 0.95316 0.93435 0.83723 0.93191 1.21441 1.20596 0.90569 1.27650 0.95213 1.26951 0.93888 1.07815 0.92277 1.70818 1.30734 1.24736 1.29316 0.82978 0.76126 0.71087 0.76240 1.20741 1.20736 1.19744 1.22236 0.74973 0.82090 0.93146 1.90554 1.51344 1.70921 1.35373 1.45860 1.64780 1.13550 1.12759 0.91482 0.88637 0.92870 0.86684 0.91597 0.91982 0.91074 0.89499 0.86576 0.87486 0.92665 0.77148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 7.59 71.98 0.55 -3.38 16 2 C 0.11 2.75 3.78 45.08 0.17 2.92 16 3 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.03 0.90 5.46 86.25 0.47 1.37 16 5 N -0.51 -20.85 5.05 -854.85 -4.32 -25.16 16 6 C 0.04 1.31 1.68 44.91 0.08 1.38 16 7 C -0.18 -6.44 10.43 30.62 0.32 -6.12 16 8 C -0.14 -3.81 6.81 30.62 0.21 -3.60 16 9 C 0.19 9.73 2.28 43.28 0.10 9.83 16 10 H 0.05 2.86 6.42 -2.38 -0.02 2.84 16 11 C -0.56 -32.29 6.67 25.60 0.17 -32.12 16 12 H 0.03 1.79 7.82 -2.91 -0.02 1.77 16 13 C -0.01 -0.45 5.45 84.65 0.46 0.02 16 14 N -0.92 -55.58 13.63 21.45 0.29 -55.29 16 15 Si 1.11 52.44 29.91 68.60 2.05 54.49 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 C 0.49 23.48 6.63 87.68 0.58 24.06 16 20 O -0.60 -34.17 17.27 -3.01 -0.05 -34.22 16 21 N -0.72 -25.11 5.07 -445.47 -2.26 -27.37 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.10 1.77 5.35 -2.39 -0.01 1.75 16 24 H 0.05 1.51 4.67 -2.38 -0.01 1.50 16 25 H 0.12 2.76 6.95 -2.39 -0.02 2.74 16 26 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 27 H 0.06 2.60 5.62 -2.39 -0.01 2.59 16 28 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.12 2.42 7.79 -2.39 -0.02 2.40 16 31 H 0.11 2.54 7.43 -2.39 -0.02 2.52 16 32 H 0.26 15.98 6.56 -92.71 -0.61 15.37 16 33 H 0.39 12.29 8.84 -92.71 -0.82 11.47 16 Total: -1.00 -72.04 257.12 -0.71 -72.75 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.47 Total: 20.44 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 3.10 Total: -5.65 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -6.28 Total: -107.82 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.05 Total: -34.22 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 2.05 Total: 54.49 kcal Total: -72.04 -0.71 -72.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.146 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds