Wall clock time and date at job start Mon Mar 30 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.37610 * 2 1 4 4 C 1.52982 * 109.37553 * 119.76454 * 2 1 3 5 5 N 1.47189 * 108.72840 * 170.34766 * 4 2 1 6 6 C 1.46900 * 110.99852 * 167.63474 * 5 4 2 7 7 C 1.53007 * 117.49930 * 124.79653 * 6 5 4 8 8 C 1.53003 * 117.49692 * 56.13496 * 6 5 4 9 9 C 1.46900 * 110.17647 * 291.00080 * 5 4 2 10 10 H 1.08997 * 109.39014 * 290.14430 * 9 5 4 11 11 C 1.50706 * 109.38472 * 170.45255 * 9 5 4 12 12 H 1.07995 * 119.99802 * 0.02562 * 11 9 5 13 13 C 1.37876 * 119.99878 * 180.02562 * 11 9 5 14 14 N 1.31523 * 120.00128 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99897 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47397 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47193 * 120.00191 * 15 13 11 18 18 H 1.48500 * 109.46936 * 239.99840 * 15 13 11 19 19 C 1.50255 * 109.97834 * 50.30132 * 9 5 4 20 20 O 1.21281 * 118.62918 * 162.79630 * 19 9 5 21 21 N 1.33718 * 122.74771 * 342.79407 * 19 9 5 22 22 H 1.08996 * 109.47333 * 300.00080 * 1 2 3 23 23 H 1.08999 * 109.47483 * 59.99949 * 1 2 3 24 24 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.59958 * 290.12515 * 4 2 1 26 26 H 1.09002 * 109.59463 * 50.42507 * 4 2 1 27 27 H 1.08999 * 115.55081 * 270.46436 * 6 5 4 28 28 H 1.09003 * 117.49435 * 359.97438 * 7 6 5 29 29 H 1.08998 * 117.49900 * 145.02046 * 7 6 5 30 30 H 1.09005 * 117.49829 * 214.97662 * 8 6 5 31 31 H 1.08996 * 117.50114 * 359.97438 * 8 6 5 32 32 H 0.96997 * 120.00018 * 180.02562 * 14 13 11 33 33 H 0.97004 * 118.53189 * 181.70267 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8916 1.0283 0.0000 4 6 2.0375 -0.7164 1.2528 5 7 3.4907 -0.9143 1.1280 6 6 4.0777 -1.3271 2.4098 7 6 4.8918 -2.6224 2.4295 8 6 3.5059 -2.5790 3.0782 9 6 3.7796 -1.8978 0.0757 10 1 3.4632 -2.8866 0.4078 11 6 5.2612 -1.9151 -0.1996 12 1 5.9206 -1.2616 0.3522 13 6 5.7747 -2.7652 -1.1559 14 7 4.9716 -3.5607 -1.8282 15 14 7.6112 -2.7872 -1.4966 16 1 8.2905 -1.8063 -0.6127 17 1 8.1477 -4.1464 -1.2313 18 1 7.8556 -2.4272 -2.9164 19 6 3.0428 -1.5348 -1.1825 20 8 3.3977 -2.0353 -2.2286 21 7 2.0120 -0.6831 -1.1970 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8255 -0.1089 2.1326 26 1 1.5416 -1.6825 1.3476 27 1 4.4070 -0.5158 3.0590 28 1 4.9914 -3.1685 1.4915 29 1 5.7564 -2.6634 3.0920 30 1 3.4594 -2.5914 4.1672 31 1 2.6938 -3.0961 2.5671 32 1 5.3330 -4.1591 -2.5007 33 1 1.5646 -0.5116 -2.0404 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219377564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:11 Heat of formation + Delta-G solvation = 26.310495 kcal Electronic energy + Delta-G solvation = -16492.104741 eV Core-core repulsion = 13940.873489 eV Total energy + Delta-G solvation = -2551.231252 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50737 -37.08192 -35.43149 -32.75762 -31.56119 -30.12038 -27.60310 -24.75973 -23.47760 -21.80852 -20.97546 -19.93341 -18.12873 -16.55995 -15.97822 -15.76982 -14.86650 -14.35095 -14.14050 -13.91553 -13.40180 -12.83100 -12.32400 -12.24364 -11.93748 -11.75933 -11.64396 -11.06450 -10.81013 -10.71944 -10.48056 -10.45692 -10.05080 -9.70535 -9.42158 -9.15376 -8.42397 -7.98464 -7.89625 -7.38325 -5.82758 -3.88329 3.37150 3.45716 3.49250 4.26188 4.31727 4.49602 4.59533 4.71956 5.25363 5.39636 5.51401 5.57910 5.65001 5.67373 5.75016 5.82413 5.95136 6.00292 6.16076 6.20297 6.51118 6.51757 6.61312 6.71750 7.06662 7.34256 7.49532 7.88219 8.03142 8.07147 8.37475 8.66625 9.06157 9.67023 9.90965 11.16976 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.012876 C = 0.009545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.662983 B = 2174.031253 C = 2932.808354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.065 0.935 4 C 0.045 3.955 5 N -0.499 5.499 6 C 0.033 3.967 7 C -0.168 4.168 8 C -0.234 4.234 9 C 0.211 3.789 10 H 0.029 0.971 11 C -0.522 4.522 12 H 0.070 0.930 13 C 0.070 3.930 14 N -0.822 5.822 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.506 3.494 20 O -0.487 6.487 21 N -0.747 5.747 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.255 0.745 33 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 4.716 7.276 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.083 0.917 4 C -0.084 4.084 5 N -0.224 5.224 6 C -0.076 4.076 7 C -0.204 4.204 8 C -0.273 4.273 9 C 0.101 3.899 10 H 0.046 0.954 11 C -0.561 4.561 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.455 5.455 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.212 1.212 19 C 0.292 3.708 20 O -0.356 6.356 21 N -0.405 5.405 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.127 0.873 28 H 0.159 0.841 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.083 4.658 6.578 10.098 hybrid contribution 0.235 -0.578 -0.275 0.682 sum -5.848 4.080 6.304 9.517 Atomic orbital electron populations 1.22149 0.95690 1.02228 1.01870 1.20752 0.92526 0.96370 0.86118 0.91677 1.22358 0.90243 0.98973 0.96782 1.62562 1.08251 1.47148 1.04389 1.22511 1.02953 0.90077 0.92069 1.23715 0.92178 1.00597 1.03947 1.23397 0.99247 1.05676 0.98969 1.19455 0.96929 0.89534 0.83954 0.95411 1.20578 0.88972 1.23607 1.22905 0.91207 1.24972 0.97561 0.95908 0.95409 1.70262 1.33278 1.20696 1.21234 0.86534 0.85699 0.77593 0.78147 1.19654 1.21183 1.21179 1.21820 0.78044 0.77376 0.93523 1.90786 1.62626 1.49677 1.32491 1.46434 1.35853 1.48558 1.09676 0.91756 0.92445 0.92388 0.90497 0.94870 0.87346 0.84086 0.90021 0.90005 0.89904 0.93442 0.79088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.42 37.15 0.35 -1.62 16 2 C 0.15 2.42 3.88 -68.21 -0.26 2.15 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.05 0.77 4.44 -3.68 -0.02 0.76 16 5 N -0.50 -10.43 4.70 -221.51 -1.04 -11.47 16 6 C 0.03 0.62 5.95 -67.71 -0.40 0.22 16 7 C -0.17 -3.26 8.59 -26.68 -0.23 -3.48 16 8 C -0.23 -3.97 9.45 -26.69 -0.25 -4.22 16 9 C 0.21 5.29 1.48 -70.23 -0.10 5.18 16 10 H 0.03 0.78 6.51 -51.93 -0.34 0.44 16 11 C -0.52 -14.30 5.69 -34.44 -0.20 -14.49 16 12 H 0.07 1.93 7.52 -52.49 -0.39 1.53 16 13 C 0.07 1.99 4.97 -17.82 -0.09 1.91 16 14 N -0.82 -24.65 10.23 55.43 0.57 -24.09 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 C 0.51 13.04 7.36 -11.67 -0.09 12.95 16 20 O -0.49 -14.59 13.73 5.56 0.08 -14.51 16 21 N -0.75 -15.19 5.18 -54.55 -0.28 -15.47 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 26 H 0.03 0.59 7.35 -51.93 -0.38 0.21 16 27 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.14 3.31 4.75 -51.93 -0.25 3.06 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.49 7.25 -51.93 -0.38 1.11 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.38 7.04 8.74 -40.82 -0.36 6.68 16 LS Contribution 261.41 15.07 3.94 3.94 Total: -1.00 -31.74 261.41 -7.66 -39.40 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.61 Total: 5.94 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.29 Total: -0.65 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.76 Total: -51.02 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.08 Total: -14.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.74 -7.66 -39.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.706 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds