Wall clock time and date at job start Mon Mar 30 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.37610 * 2 1 4 4 C 1.52982 * 109.37553 * 119.76454 * 2 1 3 5 5 N 1.47189 * 108.72840 * 170.34766 * 4 2 1 6 6 C 1.46900 * 110.99852 * 167.63474 * 5 4 2 7 7 C 1.53007 * 117.49930 * 124.79653 * 6 5 4 8 8 C 1.53003 * 117.49692 * 56.13496 * 6 5 4 9 9 C 1.46900 * 110.17647 * 291.00080 * 5 4 2 10 10 H 1.08997 * 109.39014 * 290.14430 * 9 5 4 11 11 C 1.50706 * 109.38472 * 170.45255 * 9 5 4 12 12 H 1.07995 * 119.99802 * 0.02562 * 11 9 5 13 13 C 1.37876 * 119.99878 * 180.02562 * 11 9 5 14 14 N 1.31523 * 120.00128 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99897 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47397 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47193 * 120.00191 * 15 13 11 18 18 H 1.48500 * 109.46936 * 239.99840 * 15 13 11 19 19 C 1.50255 * 109.97834 * 50.30132 * 9 5 4 20 20 O 1.21281 * 118.62918 * 162.79630 * 19 9 5 21 21 N 1.33718 * 122.74771 * 342.79407 * 19 9 5 22 22 H 1.08996 * 109.47333 * 300.00080 * 1 2 3 23 23 H 1.08999 * 109.47483 * 59.99949 * 1 2 3 24 24 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.59958 * 290.12515 * 4 2 1 26 26 H 1.09002 * 109.59463 * 50.42507 * 4 2 1 27 27 H 1.08999 * 115.55081 * 270.46436 * 6 5 4 28 28 H 1.09003 * 117.49435 * 359.97438 * 7 6 5 29 29 H 1.08998 * 117.49900 * 145.02046 * 7 6 5 30 30 H 1.09005 * 117.49829 * 214.97662 * 8 6 5 31 31 H 1.08996 * 117.50114 * 359.97438 * 8 6 5 32 32 H 0.96997 * 120.00018 * 180.02562 * 14 13 11 33 33 H 0.97004 * 118.53189 * 181.70267 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8916 1.0283 0.0000 4 6 2.0375 -0.7164 1.2528 5 7 3.4907 -0.9143 1.1280 6 6 4.0777 -1.3271 2.4098 7 6 4.8918 -2.6224 2.4295 8 6 3.5059 -2.5790 3.0782 9 6 3.7796 -1.8978 0.0757 10 1 3.4632 -2.8866 0.4078 11 6 5.2612 -1.9151 -0.1996 12 1 5.9206 -1.2616 0.3522 13 6 5.7747 -2.7652 -1.1559 14 7 4.9716 -3.5607 -1.8282 15 14 7.6112 -2.7872 -1.4966 16 1 8.2905 -1.8063 -0.6127 17 1 8.1477 -4.1464 -1.2313 18 1 7.8556 -2.4272 -2.9164 19 6 3.0428 -1.5348 -1.1825 20 8 3.3977 -2.0353 -2.2286 21 7 2.0120 -0.6831 -1.1970 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8255 -0.1089 2.1326 26 1 1.5416 -1.6825 1.3476 27 1 4.4070 -0.5158 3.0590 28 1 4.9914 -3.1685 1.4915 29 1 5.7564 -2.6634 3.0920 30 1 3.4594 -2.5914 4.1672 31 1 2.6938 -3.0961 2.5671 32 1 5.3330 -4.1591 -2.5007 33 1 1.5646 -0.5116 -2.0404 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219377564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:10 Heat of formation + Delta-G solvation = 1.929319 kcal Electronic energy + Delta-G solvation = -16493.161988 eV Core-core repulsion = 13940.873489 eV Total energy + Delta-G solvation = -2552.288499 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.20897 -38.80677 -37.06759 -34.72049 -33.27161 -31.71489 -29.37579 -26.17909 -25.44163 -23.32508 -22.47474 -21.48556 -19.85639 -18.48632 -17.70303 -17.39472 -16.55960 -16.31309 -15.63986 -15.53571 -15.27330 -14.32709 -14.08639 -13.73885 -13.39508 -13.23364 -13.11656 -12.79310 -12.57023 -12.32600 -12.20150 -12.03947 -11.67627 -11.44227 -11.27118 -10.72851 -10.52067 -9.99371 -9.64170 -9.03220 -7.96243 -6.05535 1.39720 1.42827 1.53918 2.27023 2.52598 2.73168 3.06196 3.18140 3.34444 3.94995 4.14441 4.19039 4.23477 4.32776 4.39646 4.52564 4.69359 4.81206 4.87986 4.99974 5.03003 5.14567 5.21001 5.33459 5.37782 5.69482 5.71172 5.89749 6.22927 6.36399 6.58721 6.74123 6.99821 7.52545 7.98191 9.03363 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.012876 C = 0.009545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.662983 B = 2174.031253 C = 2932.808354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 H 0.078 0.922 4 C 0.042 3.958 5 N -0.510 5.510 6 C 0.027 3.973 7 C -0.190 4.190 8 C -0.204 4.204 9 C 0.220 3.780 10 H -0.005 1.005 11 C -0.520 4.520 12 H 0.063 0.937 13 C 0.018 3.982 14 N -0.858 5.858 15 Si 0.952 3.048 16 H -0.260 1.260 17 H -0.277 1.277 18 H -0.294 1.294 19 C 0.495 3.505 20 O -0.542 6.542 21 N -0.736 5.736 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.116 0.884 26 H 0.025 0.975 27 H 0.137 0.863 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.249 0.751 33 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 6.570 9.388 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.036 3.964 3 H 0.096 0.904 4 C -0.086 4.086 5 N -0.234 5.234 6 C -0.082 4.082 7 C -0.227 4.227 8 C -0.243 4.243 9 C 0.109 3.891 10 H 0.012 0.988 11 C -0.558 4.558 12 H 0.082 0.918 13 C -0.187 4.187 14 N -0.493 5.493 15 Si 0.778 3.222 16 H -0.184 1.184 17 H -0.203 1.203 18 H -0.220 1.220 19 C 0.282 3.718 20 O -0.415 6.415 21 N -0.393 5.393 22 H 0.115 0.885 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.134 0.866 26 H 0.043 0.957 27 H 0.155 0.845 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.949 6.557 8.743 12.951 hybrid contribution 0.409 -1.093 -0.840 1.438 sum -6.540 5.464 7.903 11.622 Atomic orbital electron populations 1.22071 0.92042 1.02455 1.04235 1.21153 0.95354 0.96075 0.83826 0.90407 1.22568 0.87771 0.99408 0.98807 1.62508 1.10927 1.45400 1.04583 1.22764 1.02857 0.90960 0.91610 1.23507 0.94640 1.01495 1.03021 1.23365 0.96771 1.03521 1.00654 1.19084 0.95687 0.89067 0.85239 0.98765 1.20751 0.90401 1.22606 1.22050 0.91838 1.25736 1.01488 0.95841 0.95588 1.70444 1.34898 1.21857 1.22104 0.85607 0.81144 0.78083 0.77391 1.18421 1.20318 1.22044 1.21863 0.79038 0.77886 0.92983 1.90751 1.64677 1.52072 1.33992 1.46231 1.34152 1.47056 1.11815 0.88466 0.91032 0.93231 0.86593 0.95697 0.84528 0.88718 0.87997 0.86290 0.91439 0.94191 0.78095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.42 71.98 0.68 -2.42 16 2 C 0.14 4.18 3.88 45.08 0.17 4.35 16 3 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.04 1.34 4.44 86.24 0.38 1.72 16 5 N -0.51 -20.65 4.70 -854.73 -4.01 -24.66 16 6 C 0.03 0.94 5.95 44.92 0.27 1.21 16 7 C -0.19 -7.26 8.59 30.62 0.26 -7.00 16 8 C -0.20 -6.47 9.45 30.62 0.29 -6.18 16 9 C 0.22 11.27 1.48 43.29 0.06 11.33 16 10 H 0.00 -0.27 6.51 -2.39 -0.02 -0.28 16 11 C -0.52 -29.17 5.69 25.60 0.15 -29.02 16 12 H 0.06 3.55 7.52 -2.91 -0.02 3.53 16 13 C 0.02 1.07 4.97 84.65 0.42 1.49 16 14 N -0.86 -53.96 10.23 21.45 0.22 -53.74 16 15 Si 0.95 46.27 29.54 68.60 2.03 48.30 16 16 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 19 C 0.50 26.14 7.36 87.68 0.65 26.79 16 20 O -0.54 -33.76 13.73 -3.03 -0.04 -33.81 16 21 N -0.74 -29.48 5.18 -445.48 -2.31 -31.78 16 22 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.12 2.79 8.06 -2.39 -0.02 2.77 16 26 H 0.02 0.84 7.35 -2.39 -0.02 0.82 16 27 H 0.14 4.05 8.14 -2.39 -0.02 4.03 16 28 H 0.09 4.62 4.75 -2.39 -0.01 4.60 16 29 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.12 2.92 8.14 -2.38 -0.02 2.90 16 31 H 0.07 2.36 7.25 -2.39 -0.02 2.34 16 32 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.38 14.18 8.74 -92.71 -0.81 13.37 16 Total: -1.00 -72.53 261.41 -0.48 -73.01 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.30 Total: 20.40 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 3.33 Total: 2.28 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -6.10 Total: -110.18 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.04 Total: -33.81 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -72.53 -0.48 -73.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.942 kcal (2) G-P(sol) polarization free energy of solvation -72.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds