Wall clock time and date at job start Mon Mar 30 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99734 * 2 1 4 4 N 1.46901 * 109.46957 * 125.00203 * 3 2 1 5 5 C 1.47185 * 110.99948 * 293.95157 * 4 3 2 6 6 C 1.52993 * 108.72816 * 167.63413 * 5 4 3 7 7 H 1.08996 * 109.37447 * 170.46886 * 6 5 4 8 8 C 1.52998 * 109.28238 * 290.17977 * 6 5 4 9 9 N 1.46005 * 110.03969 * 50.29626 * 6 5 4 10 10 C 1.33714 * 122.93116 * 341.83456 * 9 6 5 11 11 O 1.21277 * 118.62879 * 181.40813 * 10 9 6 12 12 C 1.46905 * 111.00124 * 171.06053 * 4 3 2 13 13 H 1.09007 * 109.38318 * 53.51062 * 12 4 3 14 14 C 1.50703 * 109.38527 * 293.82306 * 12 4 3 15 15 H 1.07993 * 119.99959 * 359.47810 * 14 12 4 16 16 C 1.37877 * 119.99592 * 179.47741 * 14 12 4 17 17 N 1.31512 * 120.00098 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99960 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47051 * 89.99873 * 18 16 14 20 20 H 1.48493 * 109.47518 * 210.00115 * 18 16 14 21 21 H 1.48503 * 109.47078 * 330.00403 * 18 16 14 22 22 H 1.08001 * 119.99425 * 179.97438 * 1 2 3 23 23 H 1.07997 * 120.00139 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.00139 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47164 * 5.00202 * 3 2 1 26 26 H 1.09005 * 109.47436 * 245.00303 * 3 2 1 27 27 H 1.08996 * 109.59592 * 47.86713 * 5 4 3 28 28 H 1.09000 * 109.60195 * 287.40777 * 5 4 3 29 29 H 1.08994 * 109.46934 * 180.52385 * 8 6 5 30 30 H 1.09002 * 109.46718 * 300.52698 * 8 6 5 31 31 H 1.09001 * 109.46859 * 60.51921 * 8 6 5 32 32 H 0.96998 * 118.53435 * 161.82084 * 9 6 5 33 33 H 0.97005 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2698 1.3471 2.4145 6 6 3.2608 1.0640 3.5452 7 1 2.7741 1.2385 4.5047 8 6 3.7160 -0.3945 3.4647 9 7 4.4217 1.9411 3.4242 10 6 4.7334 2.5827 2.2932 11 8 5.7309 3.2721 2.2721 12 6 3.8961 2.4900 1.0490 13 1 3.3055 3.3999 0.9418 14 6 4.7965 2.3364 -0.1497 15 1 4.7142 1.4622 -0.7784 16 6 5.7253 3.3121 -0.4436 17 7 5.8258 4.3764 0.3223 18 14 6.8419 3.1215 -1.9290 19 1 6.1929 3.7309 -3.1175 20 1 8.1349 3.8031 -1.6671 21 1 7.0854 1.6788 -2.1833 22 1 -0.5399 -0.9354 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8501 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 1.4968 0.5787 2.4051 28 1 1.8138 2.3256 2.5646 29 1 4.4151 -0.6021 4.2747 30 1 2.8503 -1.0507 3.5548 31 1 4.2066 -0.5697 2.5073 32 1 4.9922 2.0641 4.1990 33 1 6.4796 5.0627 0.1157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219377673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:16 Heat of formation + Delta-G solvation = 12.734418 kcal Electronic energy + Delta-G solvation = -16241.171507 eV Core-core repulsion = 13689.351552 eV Total energy + Delta-G solvation = -2551.819955 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.24833 -36.40781 -34.88087 -33.05102 -31.69851 -29.94967 -27.38407 -26.37842 -24.07873 -21.94531 -21.44347 -19.29171 -17.91601 -16.64409 -16.09028 -15.61965 -14.68814 -14.29376 -14.10876 -13.61038 -13.38885 -13.29649 -12.64984 -12.50698 -12.01659 -11.83307 -11.31973 -11.08639 -11.01304 -10.79169 -10.67021 -10.46444 -10.42702 -9.84918 -9.35517 -9.03364 -8.40612 -7.99175 -7.92868 -7.42872 -5.83146 -3.92304 2.58506 3.37298 3.44587 3.47751 4.25962 4.37089 4.55756 4.81537 5.29591 5.34960 5.44242 5.52359 5.57016 5.77600 5.96625 5.98410 6.04854 6.16690 6.28333 6.34952 6.42626 6.65774 6.83375 6.94323 6.99127 7.12295 7.51518 7.84402 8.03713 8.05683 8.37108 8.66282 9.03378 9.67540 9.91420 11.17443 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.011872 C = 0.008886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.094515 B = 2357.832585 C = 3150.437010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.122 4.122 3 C 0.083 3.917 4 N -0.520 5.520 5 C 0.039 3.961 6 C 0.151 3.849 7 H 0.065 0.935 8 C -0.156 4.156 9 N -0.746 5.746 10 C 0.509 3.491 11 O -0.489 6.489 12 C 0.215 3.785 13 H 0.025 0.975 14 C -0.535 4.535 15 H 0.068 0.932 16 C 0.073 3.927 17 N -0.822 5.822 18 Si 0.895 3.105 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.110 0.890 25 H 0.027 0.973 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.375 0.625 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 -7.361 3.810 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.141 4.141 3 C -0.045 4.045 4 N -0.245 5.245 5 C -0.090 4.090 6 C 0.044 3.956 7 H 0.083 0.917 8 C -0.214 4.214 9 N -0.404 5.404 10 C 0.296 3.704 11 O -0.358 6.358 12 C 0.105 3.895 13 H 0.043 0.957 14 C -0.573 4.573 15 H 0.086 0.914 16 C -0.136 4.136 17 N -0.455 5.455 18 Si 0.723 3.277 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.128 0.872 25 H 0.046 0.954 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.209 0.791 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.891 -7.179 3.587 11.255 hybrid contribution 0.293 0.573 -0.243 0.688 sum -7.598 -6.606 3.344 10.609 Atomic orbital electron populations 1.23731 0.95983 1.01125 1.04677 1.23120 0.95305 0.99425 0.96230 1.21202 0.93798 0.92707 0.96775 1.62499 1.17586 1.44822 0.99620 1.22417 0.95507 0.99861 0.91173 1.20728 0.87199 0.90484 0.97153 0.91700 1.22155 1.00758 0.95645 1.02888 1.46371 1.29432 1.50079 1.14502 1.21735 0.87178 0.78032 0.83446 1.90776 1.25566 1.37519 1.81946 1.19329 0.90287 0.87288 0.92547 0.95732 1.20554 1.20718 1.06764 1.09261 0.91416 1.24970 0.96977 0.95468 0.96181 1.70230 1.33149 1.07917 1.34193 0.86568 0.80236 0.78251 0.82687 1.20793 1.21353 1.19875 0.89052 0.89114 0.87246 0.95442 0.88252 0.90271 0.95230 0.93675 0.92882 0.90766 0.79111 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.74 14.32 29.01 0.42 -2.32 16 2 C -0.12 -1.80 8.48 -36.03 -0.31 -2.11 16 3 C 0.08 1.50 5.24 -4.98 -0.03 1.48 16 4 N -0.52 -10.56 4.08 -230.89 -0.94 -11.50 16 5 C 0.04 0.67 4.82 -3.67 -0.02 0.65 16 6 C 0.15 2.45 3.93 -68.20 -0.27 2.18 16 7 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 8 C -0.16 -2.31 9.39 37.16 0.35 -1.96 16 9 N -0.75 -15.10 5.11 -54.55 -0.28 -15.38 16 10 C 0.51 13.10 7.36 -11.67 -0.09 13.01 16 11 O -0.49 -14.68 13.80 5.56 0.08 -14.61 16 12 C 0.21 5.44 1.93 -70.23 -0.14 5.31 16 13 H 0.03 0.70 8.12 -51.92 -0.42 0.28 16 14 C -0.53 -14.87 7.79 -34.44 -0.27 -15.14 16 15 H 0.07 1.85 7.19 -52.49 -0.38 1.48 16 16 C 0.07 2.11 4.97 -17.82 -0.09 2.02 16 17 N -0.82 -24.99 10.28 55.43 0.57 -24.42 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 23 H 0.09 1.12 7.84 -52.49 -0.41 0.71 16 24 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 25 H 0.03 0.49 7.77 -51.93 -0.40 0.09 16 26 H 0.10 1.99 6.68 -51.93 -0.35 1.64 16 27 H 0.08 1.16 6.95 -51.93 -0.36 0.80 16 28 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.31 7.88 -51.93 -0.41 0.91 16 32 H 0.38 7.00 8.84 -40.82 -0.36 6.64 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 270.54 15.07 4.08 4.08 Total: -1.00 -31.92 270.54 -6.71 -38.63 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.76 Total: 3.03 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.43 Total: 3.12 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.65 Total: -51.30 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.08 Total: -14.61 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.92 -6.71 -38.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.363 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds