Wall clock time and date at job start Mon Mar 30 2020 03:10:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31005 * 1
3 3 C 1.50694 * 119.99734 * 2 1
4 4 N 1.46901 * 109.46957 * 125.00203 * 3 2 1
5 5 C 1.47185 * 110.99948 * 293.95157 * 4 3 2
6 6 C 1.52993 * 108.72816 * 167.63413 * 5 4 3
7 7 H 1.08996 * 109.37447 * 170.46886 * 6 5 4
8 8 C 1.52998 * 109.28238 * 290.17977 * 6 5 4
9 9 N 1.46005 * 110.03969 * 50.29626 * 6 5 4
10 10 C 1.33714 * 122.93116 * 341.83456 * 9 6 5
11 11 O 1.21277 * 118.62879 * 181.40813 * 10 9 6
12 12 C 1.46905 * 111.00124 * 171.06053 * 4 3 2
13 13 H 1.09007 * 109.38318 * 53.51062 * 12 4 3
14 14 C 1.50703 * 109.38527 * 293.82306 * 12 4 3
15 15 H 1.07993 * 119.99959 * 359.47810 * 14 12 4
16 16 C 1.37877 * 119.99592 * 179.47741 * 14 12 4
17 17 N 1.31512 * 120.00098 * 0.02562 * 16 14 12
18 18 Si 1.86799 * 119.99960 * 179.97438 * 16 14 12
19 19 H 1.48499 * 109.47051 * 89.99873 * 18 16 14
20 20 H 1.48493 * 109.47518 * 210.00115 * 18 16 14
21 21 H 1.48503 * 109.47078 * 330.00403 * 18 16 14
22 22 H 1.08001 * 119.99425 * 179.97438 * 1 2 3
23 23 H 1.07997 * 120.00139 * 359.97438 * 1 2 3
24 24 H 1.07997 * 120.00139 * 180.02562 * 2 1 3
25 25 H 1.09004 * 109.47164 * 5.00202 * 3 2 1
26 26 H 1.09005 * 109.47436 * 245.00303 * 3 2 1
27 27 H 1.08996 * 109.59592 * 47.86713 * 5 4 3
28 28 H 1.09000 * 109.60195 * 287.40777 * 5 4 3
29 29 H 1.08994 * 109.46934 * 180.52385 * 8 6 5
30 30 H 1.09002 * 109.46718 * 300.52698 * 8 6 5
31 31 H 1.09001 * 109.46859 * 60.51921 * 8 6 5
32 32 H 0.96998 * 118.53435 * 161.82084 * 9 6 5
33 33 H 0.97005 * 120.00129 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9963 1.3319 1.1345
5 6 2.2698 1.3471 2.4145
6 6 3.2608 1.0640 3.5452
7 1 2.7741 1.2385 4.5047
8 6 3.7160 -0.3945 3.4647
9 7 4.4217 1.9411 3.4242
10 6 4.7334 2.5827 2.2932
11 8 5.7309 3.2721 2.2721
12 6 3.8961 2.4900 1.0490
13 1 3.3055 3.3999 0.9418
14 6 4.7965 2.3364 -0.1497
15 1 4.7142 1.4622 -0.7784
16 6 5.7253 3.3121 -0.4436
17 7 5.8258 4.3764 0.3223
18 14 6.8419 3.1215 -1.9290
19 1 6.1929 3.7309 -3.1175
20 1 8.1349 3.8031 -1.6671
21 1 7.0854 1.6788 -2.1833
22 1 -0.5399 -0.9354 -0.0004
23 1 -0.5400 0.9353 0.0004
24 1 1.8501 -0.9353 -0.0004
25 1 1.3585 2.1316 0.0896
26 1 2.6213 1.4027 -0.9314
27 1 1.4968 0.5787 2.4051
28 1 1.8138 2.3256 2.5646
29 1 4.4151 -0.6021 4.2747
30 1 2.8503 -1.0507 3.5548
31 1 4.2066 -0.5697 2.5073
32 1 4.9922 2.0641 4.1990
33 1 6.4796 5.0627 0.1157
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000219377673.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:15
Heat of formation + Delta-G solvation = -11.488035 kcal
Electronic energy + Delta-G solvation = -16242.221871 eV
Core-core repulsion = 13689.351552 eV
Total energy + Delta-G solvation = -2552.870319 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.98757 -38.16191 -36.46570 -34.79486 -33.41576 -31.58746 -29.18992 -27.74105
-25.91011 -23.59031 -23.05061 -20.49866 -19.63549 -18.60824 -17.77348 -17.36094
-16.38447 -15.97038 -15.72846 -15.29411 -14.97998 -14.83341 -14.31672 -13.95418
-13.77653 -13.27684 -12.84767 -12.79361 -12.61801 -12.54244 -12.28806 -11.99113
-11.84553 -11.70948 -11.27502 -10.57369 -10.22502 -9.96559 -9.66705 -9.09280
-8.00099 -6.14682 1.39163 1.42690 1.48323 1.52374 2.26791 2.51001
2.74376 3.23323 3.33369 3.97213 4.14107 4.20987 4.30478 4.45177
4.51320 4.72550 4.76678 4.82163 5.04176 5.06259 5.09343 5.17513
5.24455 5.57783 5.64399 5.79501 5.83234 5.98921 6.22062 6.36139
6.58901 6.70982 6.97553 7.48852 7.98309 9.00022
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.024319 B = 0.011872 C = 0.008886
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1151.094515 B = 2357.832585 C = 3150.437010
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.143 4.143
3 C 0.085 3.915
4 N -0.521 5.521
5 C 0.037 3.963
6 C 0.142 3.858
7 H 0.108 0.892
8 C -0.147 4.147
9 N -0.734 5.734
10 C 0.503 3.497
11 O -0.544 6.544
12 C 0.217 3.783
13 H -0.013 1.013
14 C -0.544 4.544
15 H 0.065 0.935
16 C 0.019 3.981
17 N -0.857 5.857
18 Si 0.959 3.041
19 H -0.268 1.268
20 H -0.292 1.292
21 H -0.267 1.267
22 H 0.121 0.879
23 H 0.094 0.906
24 H 0.115 0.885
25 H 0.024 0.976
26 H 0.069 0.931
27 H 0.114 0.886
28 H 0.021 0.979
29 H 0.057 0.943
30 H 0.086 0.914
31 H 0.040 0.960
32 H 0.386 0.614
33 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.525 -9.649 4.421 14.947
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.161 4.161
3 C -0.043 4.043
4 N -0.247 5.247
5 C -0.091 4.091
6 C 0.037 3.963
7 H 0.126 0.874
8 C -0.206 4.206
9 N -0.390 5.390
10 C 0.290 3.710
11 O -0.417 6.417
12 C 0.107 3.893
13 H 0.004 0.996
14 C -0.582 4.582
15 H 0.083 0.917
16 C -0.187 4.187
17 N -0.492 5.492
18 Si 0.784 3.216
19 H -0.193 1.193
20 H -0.218 1.218
21 H -0.192 1.192
22 H 0.139 0.861
23 H 0.112 0.888
24 H 0.133 0.867
25 H 0.042 0.958
26 H 0.088 0.912
27 H 0.132 0.868
28 H 0.040 0.960
29 H 0.076 0.924
30 H 0.105 0.895
31 H 0.059 0.941
32 H 0.221 0.779
33 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -9.735 -9.525 4.221 14.259
hybrid contribution 0.677 1.219 -0.371 1.443
sum -9.058 -8.305 3.850 12.879
Atomic orbital electron populations
1.23970 0.95003 1.02662 1.00398 1.22805 0.95857 0.97412 1.00058
1.21156 0.93236 0.95046 0.94841 1.62455 1.18525 1.41775 1.01906
1.22599 0.96215 1.00647 0.89653 1.21190 0.85636 0.90605 0.98821
0.87376 1.22062 1.02182 0.94802 1.01511 1.46116 1.30494 1.49310
1.13073 1.21630 0.86532 0.78003 0.84806 1.90738 1.27724 1.40033
1.83241 1.19026 0.90585 0.87623 0.92077 0.99576 1.20861 1.20855
1.06315 1.10187 0.91714 1.25823 0.98662 0.95265 0.98927 1.70420
1.33882 1.08764 1.36089 0.85566 0.78010 0.78390 0.79655 1.19290
1.21770 1.19161 0.86097 0.88794 0.86735 0.95784 0.91227 0.86804
0.96050 0.92367 0.89509 0.94112 0.77933 0.93990
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.88 14.32 67.78 0.97 -2.91 16
2 C -0.14 -3.87 8.48 25.64 0.22 -3.66 16
3 C 0.08 3.08 5.24 85.56 0.45 3.53 16
4 N -0.52 -21.14 4.08 -884.40 -3.60 -24.74 16
5 C 0.04 1.19 4.82 86.25 0.42 1.60 16
6 C 0.14 4.19 3.93 45.08 0.18 4.37 16
7 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16
8 C -0.15 -3.85 9.39 71.98 0.68 -3.17 16
9 N -0.73 -29.15 5.11 -445.47 -2.28 -31.42 16
10 C 0.50 26.58 7.36 87.68 0.64 27.22 16
11 O -0.54 -33.96 13.80 -3.02 -0.04 -34.00 16
12 C 0.22 11.41 1.93 43.28 0.08 11.50 16
13 H -0.01 -0.75 8.12 -2.38 -0.02 -0.77 16
14 C -0.54 -31.34 7.79 25.60 0.20 -31.15 16
15 H 0.06 3.66 7.19 -2.91 -0.02 3.64 16
16 C 0.02 1.11 4.97 84.66 0.42 1.53 16
17 N -0.86 -54.46 10.28 21.45 0.22 -54.24 16
18 Si 0.96 46.57 29.54 68.60 2.03 48.60 16
19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
20 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16
21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
22 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16
23 H 0.09 1.97 7.84 -2.91 -0.02 1.95 16
24 H 0.11 3.02 8.06 -2.91 -0.02 2.99 16
25 H 0.02 0.87 7.77 -2.39 -0.02 0.85 16
26 H 0.07 2.90 6.68 -2.38 -0.02 2.88 16
27 H 0.11 2.87 6.95 -2.39 -0.02 2.85 16
28 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16
29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
31 H 0.04 1.35 7.88 -2.39 -0.02 1.33 16
32 H 0.39 14.01 8.84 -92.71 -0.82 13.19 16
33 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16
Total: -1.00 -73.20 270.54 0.85 -72.34
By element:
Atomic # 1 Polarization: 14.35 SS G_CDS: 0.27 Total: 14.62 kcal
Atomic # 6 Polarization: 4.60 SS G_CDS: 4.25 Total: 8.85 kcal
Atomic # 7 Polarization: -104.75 SS G_CDS: -5.66 Total: -110.41 kcal
Atomic # 8 Polarization: -33.96 SS G_CDS: -0.04 Total: -34.00 kcal
Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal
Total: -73.20 0.85 -72.34 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219377673.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.856 kcal
(2) G-P(sol) polarization free energy of solvation -73.197 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.341 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.488 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds