Wall clock time and date at job start Mon Mar 30 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99734 * 2 1 4 4 N 1.46901 * 109.46957 * 125.00203 * 3 2 1 5 5 C 1.47185 * 110.99948 * 293.95157 * 4 3 2 6 6 C 1.52993 * 108.72816 * 167.63413 * 5 4 3 7 7 H 1.08996 * 109.37447 * 170.46886 * 6 5 4 8 8 C 1.52998 * 109.28238 * 290.17977 * 6 5 4 9 9 N 1.46005 * 110.03969 * 50.29626 * 6 5 4 10 10 C 1.33714 * 122.93116 * 341.83456 * 9 6 5 11 11 O 1.21277 * 118.62879 * 181.40813 * 10 9 6 12 12 C 1.46905 * 111.00124 * 171.06053 * 4 3 2 13 13 H 1.09007 * 109.38318 * 53.51062 * 12 4 3 14 14 C 1.50703 * 109.38527 * 293.82306 * 12 4 3 15 15 H 1.07993 * 119.99959 * 359.47810 * 14 12 4 16 16 C 1.37877 * 119.99592 * 179.47741 * 14 12 4 17 17 N 1.31512 * 120.00098 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99960 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47051 * 89.99873 * 18 16 14 20 20 H 1.48493 * 109.47518 * 210.00115 * 18 16 14 21 21 H 1.48503 * 109.47078 * 330.00403 * 18 16 14 22 22 H 1.08001 * 119.99425 * 179.97438 * 1 2 3 23 23 H 1.07997 * 120.00139 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.00139 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47164 * 5.00202 * 3 2 1 26 26 H 1.09005 * 109.47436 * 245.00303 * 3 2 1 27 27 H 1.08996 * 109.59592 * 47.86713 * 5 4 3 28 28 H 1.09000 * 109.60195 * 287.40777 * 5 4 3 29 29 H 1.08994 * 109.46934 * 180.52385 * 8 6 5 30 30 H 1.09002 * 109.46718 * 300.52698 * 8 6 5 31 31 H 1.09001 * 109.46859 * 60.51921 * 8 6 5 32 32 H 0.96998 * 118.53435 * 161.82084 * 9 6 5 33 33 H 0.97005 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2698 1.3471 2.4145 6 6 3.2608 1.0640 3.5452 7 1 2.7741 1.2385 4.5047 8 6 3.7160 -0.3945 3.4647 9 7 4.4217 1.9411 3.4242 10 6 4.7334 2.5827 2.2932 11 8 5.7309 3.2721 2.2721 12 6 3.8961 2.4900 1.0490 13 1 3.3055 3.3999 0.9418 14 6 4.7965 2.3364 -0.1497 15 1 4.7142 1.4622 -0.7784 16 6 5.7253 3.3121 -0.4436 17 7 5.8258 4.3764 0.3223 18 14 6.8419 3.1215 -1.9290 19 1 6.1929 3.7309 -3.1175 20 1 8.1349 3.8031 -1.6671 21 1 7.0854 1.6788 -2.1833 22 1 -0.5399 -0.9354 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8501 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6213 1.4027 -0.9314 27 1 1.4968 0.5787 2.4051 28 1 1.8138 2.3256 2.5646 29 1 4.4151 -0.6021 4.2747 30 1 2.8503 -1.0507 3.5548 31 1 4.2066 -0.5697 2.5073 32 1 4.9922 2.0641 4.1990 33 1 6.4796 5.0627 0.1157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219377673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:15 Heat of formation + Delta-G solvation = -11.488035 kcal Electronic energy + Delta-G solvation = -16242.221871 eV Core-core repulsion = 13689.351552 eV Total energy + Delta-G solvation = -2552.870319 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98757 -38.16191 -36.46570 -34.79486 -33.41576 -31.58746 -29.18992 -27.74105 -25.91011 -23.59031 -23.05061 -20.49866 -19.63549 -18.60824 -17.77348 -17.36094 -16.38447 -15.97038 -15.72846 -15.29411 -14.97998 -14.83341 -14.31672 -13.95418 -13.77653 -13.27684 -12.84767 -12.79361 -12.61801 -12.54244 -12.28806 -11.99113 -11.84553 -11.70948 -11.27502 -10.57369 -10.22502 -9.96559 -9.66705 -9.09280 -8.00099 -6.14682 1.39163 1.42690 1.48323 1.52374 2.26791 2.51001 2.74376 3.23323 3.33369 3.97213 4.14107 4.20987 4.30478 4.45177 4.51320 4.72550 4.76678 4.82163 5.04176 5.06259 5.09343 5.17513 5.24455 5.57783 5.64399 5.79501 5.83234 5.98921 6.22062 6.36139 6.58901 6.70982 6.97553 7.48852 7.98309 9.00022 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.011872 C = 0.008886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.094515 B = 2357.832585 C = 3150.437010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.085 3.915 4 N -0.521 5.521 5 C 0.037 3.963 6 C 0.142 3.858 7 H 0.108 0.892 8 C -0.147 4.147 9 N -0.734 5.734 10 C 0.503 3.497 11 O -0.544 6.544 12 C 0.217 3.783 13 H -0.013 1.013 14 C -0.544 4.544 15 H 0.065 0.935 16 C 0.019 3.981 17 N -0.857 5.857 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.267 1.267 22 H 0.121 0.879 23 H 0.094 0.906 24 H 0.115 0.885 25 H 0.024 0.976 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.386 0.614 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 -9.649 4.421 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.161 4.161 3 C -0.043 4.043 4 N -0.247 5.247 5 C -0.091 4.091 6 C 0.037 3.963 7 H 0.126 0.874 8 C -0.206 4.206 9 N -0.390 5.390 10 C 0.290 3.710 11 O -0.417 6.417 12 C 0.107 3.893 13 H 0.004 0.996 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.187 4.187 17 N -0.492 5.492 18 Si 0.784 3.216 19 H -0.193 1.193 20 H -0.218 1.218 21 H -0.192 1.192 22 H 0.139 0.861 23 H 0.112 0.888 24 H 0.133 0.867 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.221 0.779 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.735 -9.525 4.221 14.259 hybrid contribution 0.677 1.219 -0.371 1.443 sum -9.058 -8.305 3.850 12.879 Atomic orbital electron populations 1.23970 0.95003 1.02662 1.00398 1.22805 0.95857 0.97412 1.00058 1.21156 0.93236 0.95046 0.94841 1.62455 1.18525 1.41775 1.01906 1.22599 0.96215 1.00647 0.89653 1.21190 0.85636 0.90605 0.98821 0.87376 1.22062 1.02182 0.94802 1.01511 1.46116 1.30494 1.49310 1.13073 1.21630 0.86532 0.78003 0.84806 1.90738 1.27724 1.40033 1.83241 1.19026 0.90585 0.87623 0.92077 0.99576 1.20861 1.20855 1.06315 1.10187 0.91714 1.25823 0.98662 0.95265 0.98927 1.70420 1.33882 1.08764 1.36089 0.85566 0.78010 0.78390 0.79655 1.19290 1.21770 1.19161 0.86097 0.88794 0.86735 0.95784 0.91227 0.86804 0.96050 0.92367 0.89509 0.94112 0.77933 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 14.32 67.78 0.97 -2.91 16 2 C -0.14 -3.87 8.48 25.64 0.22 -3.66 16 3 C 0.08 3.08 5.24 85.56 0.45 3.53 16 4 N -0.52 -21.14 4.08 -884.40 -3.60 -24.74 16 5 C 0.04 1.19 4.82 86.25 0.42 1.60 16 6 C 0.14 4.19 3.93 45.08 0.18 4.37 16 7 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 8 C -0.15 -3.85 9.39 71.98 0.68 -3.17 16 9 N -0.73 -29.15 5.11 -445.47 -2.28 -31.42 16 10 C 0.50 26.58 7.36 87.68 0.64 27.22 16 11 O -0.54 -33.96 13.80 -3.02 -0.04 -34.00 16 12 C 0.22 11.41 1.93 43.28 0.08 11.50 16 13 H -0.01 -0.75 8.12 -2.38 -0.02 -0.77 16 14 C -0.54 -31.34 7.79 25.60 0.20 -31.15 16 15 H 0.06 3.66 7.19 -2.91 -0.02 3.64 16 16 C 0.02 1.11 4.97 84.66 0.42 1.53 16 17 N -0.86 -54.46 10.28 21.45 0.22 -54.24 16 18 Si 0.96 46.57 29.54 68.60 2.03 48.60 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16 23 H 0.09 1.97 7.84 -2.91 -0.02 1.95 16 24 H 0.11 3.02 8.06 -2.91 -0.02 2.99 16 25 H 0.02 0.87 7.77 -2.39 -0.02 0.85 16 26 H 0.07 2.90 6.68 -2.38 -0.02 2.88 16 27 H 0.11 2.87 6.95 -2.39 -0.02 2.85 16 28 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.35 7.88 -2.39 -0.02 1.33 16 32 H 0.39 14.01 8.84 -92.71 -0.82 13.19 16 33 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -73.20 270.54 0.85 -72.34 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.27 Total: 14.62 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 4.25 Total: 8.85 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -5.66 Total: -110.41 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.04 Total: -34.00 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.20 0.85 -72.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.856 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds