Wall clock time and date at job start Mon Mar 30 2020 03:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.45994 * 118.52828 * 2 1 4 4 C 1.52982 * 110.10739 * 162.07330 * 3 2 1 5 5 N 1.47184 * 108.73182 * 50.07003 * 4 3 2 6 6 C 1.46904 * 111.00029 * 54.36737 * 5 4 3 7 7 C 1.52997 * 117.49669 * 120.73050 * 6 5 4 8 8 C 1.52995 * 60.00107 * 252.51478 * 7 6 5 9 9 C 1.46907 * 110.17436 * 291.00194 * 5 4 3 10 10 H 1.08994 * 109.38528 * 290.14142 * 9 5 4 11 11 C 1.50701 * 109.38594 * 170.45184 * 9 5 4 12 12 H 1.08002 * 119.99794 * 359.48595 * 11 9 5 13 13 C 1.37874 * 120.00240 * 179.48364 * 11 9 5 14 14 N 1.31517 * 119.99695 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 120.00368 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46819 * 59.99932 * 15 13 11 17 17 H 1.48495 * 109.47060 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46766 * 300.00159 * 15 13 11 19 19 C 1.33718 * 118.53445 * 179.74559 * 2 1 3 20 20 O 1.21283 * 118.62792 * 1.67219 * 19 2 1 21 21 H 1.09003 * 109.47480 * 180.24940 * 1 2 3 22 22 H 1.09000 * 109.47566 * 300.24761 * 1 2 3 23 23 H 1.08997 * 109.46836 * 60.25143 * 1 2 3 24 24 H 1.09006 * 109.52186 * 41.76482 * 3 2 1 25 25 H 1.09002 * 109.07017 * 282.09633 * 3 2 1 26 26 H 1.09008 * 109.59446 * 290.29935 * 4 3 2 27 27 H 1.09002 * 109.59617 * 169.84947 * 4 3 2 28 28 H 1.08999 * 115.55239 * 266.44062 * 6 5 4 29 29 H 1.08999 * 117.50173 * 0.02562 * 7 6 5 30 30 H 1.09000 * 117.49583 * 145.02261 * 7 6 5 31 31 H 1.09001 * 117.49698 * 252.51540 * 8 7 6 32 32 H 1.08998 * 117.52056 * 107.48298 * 8 7 6 33 33 H 0.97005 * 119.99688 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1622 1.2827 0.0000 4 6 3.6143 1.0920 0.4422 5 7 4.2078 -0.0020 -0.3435 6 6 4.0598 0.2441 -1.7842 7 6 5.3375 0.3271 -2.6216 8 6 4.5352 1.5950 -2.3225 9 6 3.6019 -1.2852 0.0364 10 1 3.9241 -1.5537 1.0424 11 6 4.0449 -2.3532 -0.9302 12 1 4.7027 -2.1013 -1.7489 13 6 3.6105 -3.6518 -0.7694 14 7 2.8099 -3.9586 0.2279 15 14 4.1602 -4.9758 -1.9672 16 1 5.6407 -5.0864 -1.9373 17 1 3.5591 -6.2764 -1.5772 18 1 3.7182 -4.6168 -3.3386 19 6 2.1037 -1.1747 0.0052 20 8 1.4464 -2.1937 -0.0213 21 1 -0.3634 -1.0277 0.0045 22 1 -0.3634 0.5177 0.8877 23 1 -0.3633 0.5099 -0.8922 24 1 1.6629 1.9687 0.6843 25 1 2.1426 1.6987 -1.0073 26 1 3.6434 0.8384 1.5020 27 1 4.1730 2.0116 0.2687 28 1 3.1808 -0.2020 -2.2495 29 1 6.2880 0.1988 -2.1037 30 1 5.2994 -0.0646 -3.6381 31 1 3.9692 2.0375 -3.1423 32 1 4.9574 2.3013 -1.6077 33 1 2.5040 -4.8722 0.3408 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219377844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:49 Heat of formation + Delta-G solvation = 33.165686 kcal Electronic energy + Delta-G solvation = -16593.967587 eV Core-core repulsion = 14043.033598 eV Total energy + Delta-G solvation = -2550.933989 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68032 -36.99132 -34.77621 -33.59064 -31.83374 -29.19682 -26.80627 -25.35728 -23.16437 -22.33012 -21.74839 -19.97849 -17.52232 -16.64104 -16.05627 -15.37347 -14.96279 -14.50710 -14.25602 -14.03828 -13.49154 -12.46047 -12.38069 -12.24553 -12.00787 -11.76779 -11.38006 -11.15152 -11.07959 -10.75897 -10.68696 -10.51740 -10.07571 -9.83869 -9.48716 -9.08234 -8.73025 -8.17362 -7.69836 -7.13975 -5.82940 -3.91218 3.39774 3.43905 3.45673 3.95805 4.19327 4.43495 4.53980 4.71208 5.35132 5.45188 5.47688 5.54950 5.62386 5.76804 5.80373 5.92283 6.00869 6.02780 6.14883 6.24478 6.36686 6.40694 6.56363 6.66576 6.77014 7.11540 7.38553 7.63630 7.94236 8.02546 8.38348 8.65178 9.04571 9.68116 9.80868 11.17974 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.013940 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.238355 B = 2008.160879 C = 2787.831598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.639 5.639 3 C 0.091 3.909 4 C 0.040 3.960 5 N -0.500 5.500 6 C 0.050 3.950 7 C -0.162 4.162 8 C -0.199 4.199 9 C 0.219 3.781 10 H 0.069 0.931 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.075 3.925 14 N -0.824 5.824 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.279 1.279 19 C 0.471 3.529 20 O -0.481 6.481 21 H 0.083 0.917 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 10.953 -1.439 11.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.380 5.380 3 C -0.034 4.034 4 C -0.089 4.089 5 N -0.224 5.224 6 C -0.059 4.059 7 C -0.200 4.200 8 C -0.237 4.237 9 C 0.110 3.890 10 H 0.086 0.914 11 C -0.574 4.574 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.457 5.457 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.205 1.205 19 C 0.258 3.742 20 O -0.349 6.349 21 H 0.102 0.898 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.085 10.118 -1.216 10.192 hybrid contribution -0.846 -0.514 -0.800 1.273 sum -0.762 9.604 -2.017 9.843 Atomic orbital electron populations 1.21413 0.82687 1.03456 0.98924 1.48156 1.05687 1.06491 1.77665 1.21844 0.94816 0.86306 1.00454 1.22461 0.91335 0.96334 0.98743 1.62465 1.55400 1.02605 1.01897 1.22059 0.97307 0.97163 0.89383 1.22931 0.97168 0.99839 1.00065 1.23126 1.05589 0.91680 1.03271 1.19505 0.83586 0.86143 0.99786 0.91371 1.20634 1.31982 0.91126 1.13692 0.90983 1.24950 0.94336 0.98571 0.95609 1.70214 1.28689 1.18204 1.28549 0.86636 0.78703 0.80946 0.81469 1.20191 1.21482 1.20484 1.23156 0.93887 0.81700 0.75411 1.90712 1.66360 1.32791 1.45037 0.89824 0.94128 0.94263 0.92496 0.92944 0.90684 0.90156 0.89345 0.88583 0.89704 0.89810 0.89107 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 10.55 59.84 0.63 2.05 16 2 N -0.64 -13.14 3.22 -182.49 -0.59 -13.73 16 3 C 0.09 1.49 5.91 -4.32 -0.03 1.47 16 4 C 0.04 0.67 5.68 -3.68 -0.02 0.64 16 5 N -0.50 -10.30 5.07 -221.51 -1.12 -11.42 16 6 C 0.05 0.96 2.33 -67.71 -0.16 0.80 16 7 C -0.16 -2.76 9.87 -26.74 -0.26 -3.02 16 8 C -0.20 -2.97 9.33 -26.73 -0.25 -3.22 16 9 C 0.22 5.55 2.44 -70.23 -0.17 5.38 16 10 H 0.07 1.89 8.14 -51.93 -0.42 1.46 16 11 C -0.54 -14.86 7.82 -34.44 -0.27 -15.13 16 12 H 0.07 1.96 6.35 -52.49 -0.33 1.63 16 13 C 0.07 2.13 4.97 -17.82 -0.09 2.05 16 14 N -0.82 -24.90 10.29 55.43 0.57 -24.33 16 15 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.47 11.99 6.40 -11.67 -0.07 11.91 16 20 O -0.48 -14.18 12.04 5.55 0.07 -14.11 16 21 H 0.08 1.72 6.67 -51.93 -0.35 1.37 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.05 0.82 7.02 -51.93 -0.36 0.46 16 26 H 0.07 1.25 8.08 -51.92 -0.42 0.84 16 27 H 0.08 1.11 6.95 -51.93 -0.36 0.75 16 28 H 0.09 1.97 7.43 -51.93 -0.39 1.58 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.24 7.11 -51.93 -0.37 0.87 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 261.66 15.07 3.94 3.94 Total: -1.00 -31.79 261.66 -7.51 -39.30 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.67 Total: 0.31 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.69 Total: 2.94 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -1.14 Total: -49.48 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.07 Total: -14.11 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.79 -7.51 -39.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.467 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds