Wall clock time and date at job start Mon Mar 30 2020 03:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.45994 * 118.52828 * 2 1 4 4 C 1.52982 * 110.10739 * 162.07330 * 3 2 1 5 5 N 1.47184 * 108.73182 * 50.07003 * 4 3 2 6 6 C 1.46904 * 111.00029 * 54.36737 * 5 4 3 7 7 C 1.52997 * 117.49669 * 120.73050 * 6 5 4 8 8 C 1.52995 * 60.00107 * 252.51478 * 7 6 5 9 9 C 1.46907 * 110.17436 * 291.00194 * 5 4 3 10 10 H 1.08994 * 109.38528 * 290.14142 * 9 5 4 11 11 C 1.50701 * 109.38594 * 170.45184 * 9 5 4 12 12 H 1.08002 * 119.99794 * 359.48595 * 11 9 5 13 13 C 1.37874 * 120.00240 * 179.48364 * 11 9 5 14 14 N 1.31517 * 119.99695 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 120.00368 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46819 * 59.99932 * 15 13 11 17 17 H 1.48495 * 109.47060 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46766 * 300.00159 * 15 13 11 19 19 C 1.33718 * 118.53445 * 179.74559 * 2 1 3 20 20 O 1.21283 * 118.62792 * 1.67219 * 19 2 1 21 21 H 1.09003 * 109.47480 * 180.24940 * 1 2 3 22 22 H 1.09000 * 109.47566 * 300.24761 * 1 2 3 23 23 H 1.08997 * 109.46836 * 60.25143 * 1 2 3 24 24 H 1.09006 * 109.52186 * 41.76482 * 3 2 1 25 25 H 1.09002 * 109.07017 * 282.09633 * 3 2 1 26 26 H 1.09008 * 109.59446 * 290.29935 * 4 3 2 27 27 H 1.09002 * 109.59617 * 169.84947 * 4 3 2 28 28 H 1.08999 * 115.55239 * 266.44062 * 6 5 4 29 29 H 1.08999 * 117.50173 * 0.02562 * 7 6 5 30 30 H 1.09000 * 117.49583 * 145.02261 * 7 6 5 31 31 H 1.09001 * 117.49698 * 252.51540 * 8 7 6 32 32 H 1.08998 * 117.52056 * 107.48298 * 8 7 6 33 33 H 0.97005 * 119.99688 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1622 1.2827 0.0000 4 6 3.6143 1.0920 0.4422 5 7 4.2078 -0.0020 -0.3435 6 6 4.0598 0.2441 -1.7842 7 6 5.3375 0.3271 -2.6216 8 6 4.5352 1.5950 -2.3225 9 6 3.6019 -1.2852 0.0364 10 1 3.9241 -1.5537 1.0424 11 6 4.0449 -2.3532 -0.9302 12 1 4.7027 -2.1013 -1.7489 13 6 3.6105 -3.6518 -0.7694 14 7 2.8099 -3.9586 0.2279 15 14 4.1602 -4.9758 -1.9672 16 1 5.6407 -5.0864 -1.9373 17 1 3.5591 -6.2764 -1.5772 18 1 3.7182 -4.6168 -3.3386 19 6 2.1037 -1.1747 0.0052 20 8 1.4464 -2.1937 -0.0213 21 1 -0.3634 -1.0277 0.0045 22 1 -0.3634 0.5177 0.8877 23 1 -0.3633 0.5099 -0.8922 24 1 1.6629 1.9687 0.6843 25 1 2.1426 1.6987 -1.0073 26 1 3.6434 0.8384 1.5020 27 1 4.1730 2.0116 0.2687 28 1 3.1808 -0.2020 -2.2495 29 1 6.2880 0.1988 -2.1037 30 1 5.2994 -0.0646 -3.6381 31 1 3.9692 2.0375 -3.1423 32 1 4.9574 2.3013 -1.6077 33 1 2.5040 -4.8722 0.3408 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219377844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:49 Heat of formation + Delta-G solvation = 9.482367 kcal Electronic energy + Delta-G solvation = -16594.994572 eV Core-core repulsion = 14043.033598 eV Total energy + Delta-G solvation = -2551.960974 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36453 -38.62460 -36.46581 -35.31509 -33.75890 -30.88403 -28.41981 -27.21856 -24.70328 -24.11305 -23.03218 -21.55224 -19.26508 -18.45197 -17.72995 -17.01850 -16.52101 -16.41534 -16.00601 -15.66012 -15.06756 -14.28252 -14.05032 -13.72569 -13.49281 -13.30289 -13.10162 -12.90510 -12.67701 -12.57693 -12.33734 -12.04548 -11.77213 -11.60043 -11.02648 -10.85379 -10.61622 -10.26491 -9.35186 -8.79958 -7.98513 -6.11242 1.39308 1.42501 1.49254 2.24553 2.38912 2.50122 3.10103 3.16718 3.31847 3.99241 4.18872 4.21833 4.27784 4.34254 4.52169 4.59334 4.64735 4.68553 4.76998 4.90406 4.96991 5.04182 5.08930 5.17817 5.29382 5.45914 5.68542 5.85907 5.91683 6.28074 6.59777 6.73564 7.01713 7.51750 7.91483 9.01859 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.013940 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.238355 B = 2008.160879 C = 2787.831598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.639 5.639 3 C 0.088 3.912 4 C 0.035 3.965 5 N -0.504 5.504 6 C 0.019 3.981 7 C -0.170 4.170 8 C -0.151 4.151 9 C 0.221 3.779 10 H 0.031 0.969 11 C -0.543 4.543 12 H 0.071 0.929 13 C 0.020 3.980 14 N -0.859 5.859 15 Si 0.955 3.045 16 H -0.263 1.263 17 H -0.290 1.290 18 H -0.277 1.277 19 C 0.467 3.533 20 O -0.535 6.535 21 H 0.049 0.951 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 13.870 -2.409 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.377 5.377 3 C -0.035 4.035 4 C -0.092 4.092 5 N -0.227 5.227 6 C -0.090 4.090 7 C -0.208 4.208 8 C -0.188 4.188 9 C 0.110 3.890 10 H 0.049 0.951 11 C -0.581 4.581 12 H 0.089 0.911 13 C -0.185 4.185 14 N -0.493 5.493 15 Si 0.780 3.220 16 H -0.187 1.187 17 H -0.216 1.216 18 H -0.202 1.202 19 C 0.254 3.746 20 O -0.408 6.408 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.139 0.861 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.559 13.116 -2.193 13.310 hybrid contribution -0.990 -1.270 -0.496 1.685 sum -0.431 11.846 -2.689 12.155 Atomic orbital electron populations 1.21540 0.80920 1.02166 1.01744 1.48027 1.07049 1.06745 1.75912 1.22118 0.94444 0.84567 1.02412 1.22681 0.92176 0.96494 0.97892 1.62349 1.55289 1.01744 1.03311 1.21887 0.97217 1.01513 0.88416 1.22998 0.96130 1.01895 0.99805 1.23222 1.02677 0.89922 1.03011 1.19139 0.84219 0.88394 0.97262 0.95138 1.20954 1.31405 0.92007 1.13724 0.91094 1.25775 0.94529 1.00961 0.97233 1.70410 1.30402 1.17939 1.30540 0.85684 0.78887 0.78168 0.79234 1.18722 1.21585 1.20247 1.22908 0.93929 0.82577 0.75152 1.90681 1.67260 1.35108 1.47715 0.93240 0.90869 0.91595 0.88577 0.91384 0.91315 0.86052 0.93021 0.89003 0.89273 0.87463 0.86813 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.73 10.55 127.77 1.35 4.08 16 2 N -0.64 -25.55 3.22 -850.24 -2.74 -28.28 16 3 C 0.09 2.56 5.91 86.47 0.51 3.07 16 4 C 0.04 1.08 5.68 86.24 0.49 1.57 16 5 N -0.50 -20.31 5.07 -854.74 -4.33 -24.64 16 6 C 0.02 0.69 2.33 44.91 0.10 0.79 16 7 C -0.17 -5.43 9.87 30.59 0.30 -5.13 16 8 C -0.15 -3.83 9.33 30.59 0.29 -3.55 16 9 C 0.22 11.52 2.44 43.28 0.11 11.62 16 10 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 11 C -0.54 -31.02 7.82 25.60 0.20 -30.82 16 12 H 0.07 3.95 6.35 -2.91 -0.02 3.93 16 13 C 0.02 1.20 4.97 84.65 0.42 1.62 16 14 N -0.86 -54.42 10.29 21.45 0.22 -54.20 16 15 Si 0.95 46.68 29.54 68.60 2.03 48.70 16 16 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 C 0.47 24.39 6.40 87.68 0.56 24.95 16 20 O -0.54 -33.03 12.04 -3.04 -0.04 -33.07 16 21 H 0.05 2.06 6.67 -2.39 -0.02 2.04 16 22 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.10 2.12 8.13 -2.38 -0.02 2.10 16 25 H 0.07 1.82 7.02 -2.39 -0.02 1.81 16 26 H 0.07 2.18 8.08 -2.38 -0.02 2.16 16 27 H 0.12 2.72 6.95 -2.39 -0.02 2.70 16 28 H 0.05 2.30 7.43 -2.39 -0.02 2.28 16 29 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.11 2.42 7.11 -2.39 -0.02 2.40 16 33 H 0.25 15.35 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -73.57 261.66 0.56 -73.01 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.09 Total: 10.27 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 4.33 Total: 8.21 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -6.85 Total: -107.13 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.04 Total: -33.07 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -73.57 0.56 -73.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.494 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds