Wall clock time and date at job start Mon Mar 30 2020 03:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46005 * 118.53705 * 2 1 4 4 C 1.52987 * 110.03931 * 198.14145 * 3 2 1 5 5 N 1.47186 * 108.72984 * 309.70706 * 4 3 2 6 6 C 1.46897 * 111.00268 * 305.63511 * 5 4 3 7 7 C 1.53005 * 117.49896 * 297.01667 * 6 5 4 8 8 C 1.53009 * 60.03168 * 252.47403 * 7 6 5 9 9 C 1.46905 * 110.17712 * 69.00143 * 5 4 3 10 10 H 1.09002 * 109.38263 * 69.84751 * 9 5 4 11 11 C 1.50695 * 109.39322 * 189.54494 * 9 5 4 12 12 H 1.08005 * 119.99862 * 359.97438 * 11 9 5 13 13 C 1.37872 * 120.00386 * 180.02562 * 11 9 5 14 14 N 1.31520 * 119.99781 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00240 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47137 * 59.99641 * 15 13 11 17 17 H 1.48499 * 109.47164 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47016 * 299.99748 * 15 13 11 19 19 C 1.33720 * 118.53141 * 179.97438 * 2 1 3 20 20 O 1.21279 * 118.62642 * 358.33045 * 19 2 1 21 21 H 1.08996 * 109.47649 * 89.99719 * 1 2 3 22 22 H 1.08999 * 109.47225 * 210.00096 * 1 2 3 23 23 H 1.09005 * 109.46729 * 329.99291 * 1 2 3 24 24 H 1.09001 * 109.37133 * 77.97208 * 3 2 1 25 25 H 1.08993 * 109.28154 * 318.25825 * 3 2 1 26 26 H 1.09001 * 109.58976 * 189.93836 * 4 3 2 27 27 H 1.08997 * 109.59407 * 69.48153 * 4 3 2 28 28 H 1.08998 * 115.55242 * 82.68804 * 6 5 4 29 29 H 1.08999 * 117.49438 * 359.97275 * 7 6 5 30 30 H 1.08996 * 117.49758 * 144.97598 * 7 6 5 31 31 H 1.08997 * 117.49791 * 107.50118 * 8 7 6 32 32 H 1.08995 * 117.49843 * 252.52170 * 8 7 6 33 33 H 0.96996 * 119.99697 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6128 1.0907 -0.4475 5 7 4.2093 -0.0016 0.3383 6 6 4.0669 0.2477 1.7789 7 6 4.7679 1.4795 2.3555 8 6 5.3130 0.0810 2.6524 9 6 3.6018 -1.2856 -0.0363 10 1 3.9199 -1.5563 -1.0431 11 6 4.0483 -2.3515 0.9308 12 1 4.7164 -2.0998 1.7412 13 6 3.6051 -3.6484 0.7804 14 7 2.7920 -3.9551 -0.2069 15 14 4.1581 -4.9695 1.9796 16 1 3.7308 -4.6013 3.3533 17 1 3.5450 -6.2684 1.6024 18 1 5.6377 -5.0889 1.9367 19 6 2.1037 -1.1748 0.0005 20 8 1.4464 -2.1935 0.0320 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5140 24 1 2.1470 1.7027 1.0057 25 1 1.6601 1.9656 -0.6849 26 1 4.1724 2.0107 -0.2781 27 1 3.6377 0.8349 -1.5067 28 1 3.1073 -0.0342 2.2123 29 1 5.3350 2.1046 1.6658 30 1 4.2692 2.0082 3.1678 31 1 6.2386 -0.2138 2.1582 32 1 5.1725 -0.3104 3.6599 33 1 2.4799 -4.8673 -0.3124 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219377923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:51 Heat of formation + Delta-G solvation = 33.500358 kcal Electronic energy + Delta-G solvation = -16598.262205 eV Core-core repulsion = 14047.342729 eV Total energy + Delta-G solvation = -2550.919476 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.64522 -36.93108 -34.81519 -33.55708 -31.83977 -29.16212 -26.80445 -25.36000 -23.13812 -22.31943 -21.71393 -20.02967 -17.47756 -16.64399 -15.96403 -15.38455 -14.99585 -14.45342 -14.23664 -13.95184 -13.55329 -12.48648 -12.38475 -12.22798 -11.98634 -11.79711 -11.45197 -11.14296 -10.98785 -10.75969 -10.67533 -10.52994 -10.11911 -9.78515 -9.39812 -9.02536 -8.73422 -8.15770 -7.69419 -7.14678 -5.80857 -3.89185 3.40118 3.44430 3.45987 3.95830 4.21826 4.46451 4.54725 4.72135 5.36790 5.46356 5.47968 5.57065 5.65140 5.69170 5.79708 5.95039 6.04314 6.06641 6.15220 6.24214 6.36638 6.42753 6.55254 6.67340 6.79152 7.13328 7.39309 7.64465 7.95023 8.04053 8.40064 8.66971 9.06493 9.69698 9.83235 11.19496 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.014163 C = 0.010093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.854654 B = 1976.557074 C = 2773.497121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.640 5.640 3 C 0.091 3.909 4 C 0.041 3.959 5 N -0.501 5.501 6 C 0.047 3.953 7 C -0.194 4.194 8 C -0.156 4.156 9 C 0.220 3.780 10 H 0.068 0.932 11 C -0.537 4.537 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.823 5.823 15 Si 0.894 3.106 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.470 3.530 20 O -0.479 6.479 21 H 0.037 0.963 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 10.989 1.559 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.382 5.382 3 C -0.035 4.035 4 C -0.088 4.088 5 N -0.225 5.225 6 C -0.062 4.062 7 C -0.232 4.232 8 C -0.194 4.194 9 C 0.110 3.890 10 H 0.085 0.915 11 C -0.575 4.575 12 H 0.093 0.907 13 C -0.135 4.135 14 N -0.456 5.456 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.202 1.202 19 C 0.257 3.743 20 O -0.346 6.346 21 H 0.056 0.944 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.237 10.155 1.340 10.246 hybrid contribution -0.882 -0.548 0.781 1.299 sum -0.645 9.607 2.121 9.859 Atomic orbital electron populations 1.21352 0.82632 1.01538 1.00186 1.48245 1.05630 1.06496 1.77788 1.21856 0.94949 0.86355 1.00315 1.22439 0.91276 0.96318 0.98725 1.62451 1.55433 1.02588 1.01985 1.21967 0.95563 0.99525 0.89127 1.23082 1.05413 0.91575 1.03107 1.22898 0.99233 0.97483 0.99806 1.19494 0.83608 0.86155 0.99739 0.91462 1.20693 1.31307 0.91254 1.14275 0.90734 1.24960 0.94373 0.98585 0.95630 1.70234 1.28169 1.18168 1.29018 0.86650 0.78681 0.80981 0.81514 1.20505 1.21510 1.20204 1.23155 0.93836 0.81636 0.75653 1.90728 1.66469 1.32730 1.44708 0.94399 0.91175 0.93252 0.93053 0.92490 0.90191 0.90693 0.90058 0.89099 0.89873 0.88428 0.89735 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.31 59.85 0.62 2.18 16 2 N -0.64 -13.18 3.22 -182.48 -0.59 -13.77 16 3 C 0.09 1.48 5.79 -4.32 -0.02 1.45 16 4 C 0.04 0.69 5.84 -3.67 -0.02 0.67 16 5 N -0.50 -10.31 5.05 -221.46 -1.12 -11.43 16 6 C 0.05 0.91 2.30 -67.67 -0.16 0.75 16 7 C -0.19 -2.92 9.91 -26.72 -0.26 -3.18 16 8 C -0.16 -2.73 9.06 -26.68 -0.24 -2.97 16 9 C 0.22 5.56 2.47 -70.23 -0.17 5.39 16 10 H 0.07 1.87 8.14 -51.93 -0.42 1.44 16 11 C -0.54 -14.86 7.94 -34.44 -0.27 -15.13 16 12 H 0.07 2.01 5.70 -52.48 -0.30 1.71 16 13 C 0.07 2.11 4.97 -17.82 -0.09 2.02 16 14 N -0.82 -24.96 10.23 55.43 0.57 -24.39 16 15 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.47 12.01 6.39 -11.67 -0.07 11.93 16 20 O -0.48 -14.20 12.22 5.56 0.07 -14.13 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 1.42 7.21 -51.93 -0.37 1.04 16 23 H 0.05 0.72 8.03 -51.93 -0.42 0.30 16 24 H 0.05 0.80 7.37 -51.93 -0.38 0.42 16 25 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 26 H 0.08 1.10 7.51 -51.93 -0.39 0.71 16 27 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 28 H 0.08 1.77 7.51 -51.93 -0.39 1.38 16 29 H 0.09 1.27 7.75 -51.93 -0.40 0.87 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 262.85 15.07 3.96 3.96 Total: -1.00 -31.99 262.85 -7.58 -39.57 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.75 Total: -0.05 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.70 Total: 3.11 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -1.14 Total: -49.59 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.07 Total: -14.13 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.99 -7.58 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.072 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds