Wall clock time and date at job start Mon Mar 30 2020 03:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46005 * 118.53705 * 2 1 4 4 C 1.52987 * 110.03931 * 198.14145 * 3 2 1 5 5 N 1.47186 * 108.72984 * 309.70706 * 4 3 2 6 6 C 1.46897 * 111.00268 * 305.63511 * 5 4 3 7 7 C 1.53005 * 117.49896 * 297.01667 * 6 5 4 8 8 C 1.53009 * 60.03168 * 252.47403 * 7 6 5 9 9 C 1.46905 * 110.17712 * 69.00143 * 5 4 3 10 10 H 1.09002 * 109.38263 * 69.84751 * 9 5 4 11 11 C 1.50695 * 109.39322 * 189.54494 * 9 5 4 12 12 H 1.08005 * 119.99862 * 359.97438 * 11 9 5 13 13 C 1.37872 * 120.00386 * 180.02562 * 11 9 5 14 14 N 1.31520 * 119.99781 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00240 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47137 * 59.99641 * 15 13 11 17 17 H 1.48499 * 109.47164 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47016 * 299.99748 * 15 13 11 19 19 C 1.33720 * 118.53141 * 179.97438 * 2 1 3 20 20 O 1.21279 * 118.62642 * 358.33045 * 19 2 1 21 21 H 1.08996 * 109.47649 * 89.99719 * 1 2 3 22 22 H 1.08999 * 109.47225 * 210.00096 * 1 2 3 23 23 H 1.09005 * 109.46729 * 329.99291 * 1 2 3 24 24 H 1.09001 * 109.37133 * 77.97208 * 3 2 1 25 25 H 1.08993 * 109.28154 * 318.25825 * 3 2 1 26 26 H 1.09001 * 109.58976 * 189.93836 * 4 3 2 27 27 H 1.08997 * 109.59407 * 69.48153 * 4 3 2 28 28 H 1.08998 * 115.55242 * 82.68804 * 6 5 4 29 29 H 1.08999 * 117.49438 * 359.97275 * 7 6 5 30 30 H 1.08996 * 117.49758 * 144.97598 * 7 6 5 31 31 H 1.08997 * 117.49791 * 107.50118 * 8 7 6 32 32 H 1.08995 * 117.49843 * 252.52170 * 8 7 6 33 33 H 0.96996 * 119.99697 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6128 1.0907 -0.4475 5 7 4.2093 -0.0016 0.3383 6 6 4.0669 0.2477 1.7789 7 6 4.7679 1.4795 2.3555 8 6 5.3130 0.0810 2.6524 9 6 3.6018 -1.2856 -0.0363 10 1 3.9199 -1.5563 -1.0431 11 6 4.0483 -2.3515 0.9308 12 1 4.7164 -2.0998 1.7412 13 6 3.6051 -3.6484 0.7804 14 7 2.7920 -3.9551 -0.2069 15 14 4.1581 -4.9695 1.9796 16 1 3.7308 -4.6013 3.3533 17 1 3.5450 -6.2684 1.6024 18 1 5.6377 -5.0889 1.9367 19 6 2.1037 -1.1748 0.0005 20 8 1.4464 -2.1935 0.0320 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5140 24 1 2.1470 1.7027 1.0057 25 1 1.6601 1.9656 -0.6849 26 1 4.1724 2.0107 -0.2781 27 1 3.6377 0.8349 -1.5067 28 1 3.1073 -0.0342 2.2123 29 1 5.3350 2.1046 1.6658 30 1 4.2692 2.0082 3.1678 31 1 6.2386 -0.2138 2.1582 32 1 5.1725 -0.3104 3.6599 33 1 2.4799 -4.8673 -0.3124 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219377923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:51 Heat of formation + Delta-G solvation = 9.676047 kcal Electronic energy + Delta-G solvation = -16599.295305 eV Core-core repulsion = 14047.342729 eV Total energy + Delta-G solvation = -2551.952576 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33823 -38.57056 -36.51013 -35.27978 -33.77242 -30.86022 -28.41953 -27.21733 -24.67683 -24.10900 -23.02046 -21.60902 -19.21759 -18.46291 -17.64757 -17.02740 -16.56646 -16.37888 -15.97132 -15.58841 -15.14562 -14.27075 -14.04441 -13.74533 -13.50748 -13.31943 -13.12553 -12.87950 -12.66775 -12.59216 -12.27461 -12.10174 -11.78668 -11.58433 -10.95862 -10.78491 -10.60430 -10.25492 -9.36156 -8.82437 -7.96576 -6.09178 1.39536 1.42730 1.49379 2.25981 2.38768 2.51146 3.08927 3.19491 3.33232 4.00792 4.19067 4.22853 4.26945 4.34303 4.52628 4.57791 4.64809 4.67584 4.79918 4.91053 4.93966 5.03086 5.09145 5.18384 5.31593 5.47739 5.69721 5.86993 5.92484 6.28190 6.61616 6.75250 7.03182 7.53480 7.92798 9.03304 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024494 B = 0.014163 C = 0.010093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.854654 B = 1976.557074 C = 2773.497121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.639 5.639 3 C 0.087 3.913 4 C 0.037 3.963 5 N -0.504 5.504 6 C 0.018 3.982 7 C -0.144 4.144 8 C -0.170 4.170 9 C 0.220 3.780 10 H 0.030 0.970 11 C -0.544 4.544 12 H 0.077 0.923 13 C 0.019 3.981 14 N -0.859 5.859 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.262 1.262 19 C 0.465 3.535 20 O -0.534 6.534 21 H 0.048 0.952 22 H 0.038 0.962 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 13.916 2.596 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.378 5.378 3 C -0.036 4.036 4 C -0.091 4.091 5 N -0.228 5.228 6 C -0.091 4.091 7 C -0.181 4.181 8 C -0.208 4.208 9 C 0.110 3.890 10 H 0.047 0.953 11 C -0.582 4.582 12 H 0.095 0.905 13 C -0.186 4.186 14 N -0.493 5.493 15 Si 0.779 3.221 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.187 1.187 19 C 0.253 3.747 20 O -0.406 6.406 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.112 0.888 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.139 0.861 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.781 13.163 2.384 13.400 hybrid contribution -1.041 -1.307 0.448 1.730 sum -0.261 11.857 2.832 12.193 Atomic orbital electron populations 1.21478 0.80861 1.02151 1.01084 1.48096 1.07005 1.06777 1.75962 1.22137 0.94549 0.84576 1.02349 1.22653 0.92150 0.96476 0.97828 1.62335 1.55300 1.01697 1.03419 1.21849 0.94977 1.04049 0.88189 1.23167 1.02366 0.89954 1.02617 1.22949 0.98010 1.00291 0.99557 1.19138 0.84212 0.88470 0.97224 0.95275 1.21051 1.30722 0.92060 1.14338 0.90516 1.25790 0.94584 1.00997 0.97259 1.70436 1.29948 1.17866 1.31060 0.85699 0.78878 0.78183 0.79294 1.20225 1.21723 1.18689 1.22932 0.93926 0.82516 0.75357 1.90695 1.67394 1.35088 1.47402 0.93349 0.94258 0.88832 0.91353 0.88575 0.86070 0.91382 0.93119 0.87079 0.87194 0.89352 0.89375 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.01 10.31 127.77 1.32 4.33 16 2 N -0.64 -25.62 3.22 -850.21 -2.74 -28.36 16 3 C 0.09 2.53 5.79 86.47 0.50 3.03 16 4 C 0.04 1.12 5.84 86.24 0.50 1.63 16 5 N -0.50 -20.26 5.05 -854.58 -4.31 -24.57 16 6 C 0.02 0.67 2.30 44.94 0.10 0.78 16 7 C -0.14 -3.68 9.91 30.60 0.30 -3.37 16 8 C -0.17 -5.61 9.06 30.62 0.28 -5.33 16 9 C 0.22 11.49 2.47 43.28 0.11 11.60 16 10 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 11 C -0.54 -30.93 7.94 25.60 0.20 -30.73 16 12 H 0.08 4.21 5.70 -2.91 -0.02 4.19 16 13 C 0.02 1.11 4.97 84.65 0.42 1.53 16 14 N -0.86 -54.60 10.23 21.45 0.22 -54.38 16 15 Si 0.95 46.68 29.54 68.60 2.03 48.71 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 17 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 18 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 19 C 0.47 24.38 6.39 87.68 0.56 24.94 16 20 O -0.53 -33.09 12.22 -3.03 -0.04 -33.13 16 21 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.04 1.60 7.21 -2.39 -0.02 1.58 16 23 H 0.09 2.39 8.03 -2.38 -0.02 2.37 16 24 H 0.07 1.81 7.37 -2.39 -0.02 1.80 16 25 H 0.10 2.12 8.12 -2.39 -0.02 2.10 16 26 H 0.12 2.72 7.51 -2.39 -0.02 2.70 16 27 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.05 2.18 7.51 -2.39 -0.02 2.17 16 29 H 0.11 2.45 7.75 -2.39 -0.02 2.43 16 30 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -73.95 262.85 0.54 -73.40 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.09 Total: 9.92 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 4.30 Total: 8.41 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -6.83 Total: -107.31 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.04 Total: -33.13 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.95 0.54 -73.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219377923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.080 kcal (2) G-P(sol) polarization free energy of solvation -73.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds