Wall clock time and date at job start Mon Mar 30 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46500 * 109.46883 * 124.99760 * 3 2 1 5 5 C 1.47250 * 120.07009 * 90.00752 * 4 3 2 6 6 C 1.53107 * 108.40046 * 249.96801 * 5 4 3 7 7 C 1.51687 * 110.75513 * 274.41699 * 6 5 4 8 8 N 1.45749 * 113.93830 * 66.76495 * 7 6 5 9 9 C 1.46870 * 112.44313 * 292.28299 * 8 7 6 10 10 H 1.09004 * 109.60554 * 325.86252 * 9 8 7 11 11 C 1.50703 * 109.60694 * 205.54276 * 9 8 7 12 12 H 1.07998 * 119.99704 * 240.00719 * 11 9 8 13 13 C 1.37872 * 119.99587 * 59.99382 * 11 9 8 14 14 N 1.31517 * 119.99674 * 180.02562 * 13 11 9 15 15 Si 1.86799 * 120.00641 * 0.02562 * 13 11 9 16 16 H 1.48501 * 109.47090 * 89.99337 * 15 13 11 17 17 H 1.48497 * 109.47321 * 210.00063 * 15 13 11 18 18 H 1.48504 * 109.46556 * 329.99836 * 15 13 11 19 19 C 1.33607 * 120.07531 * 269.72314 * 4 3 2 20 20 O 1.21280 * 119.88421 * 0.54423 * 19 4 3 21 21 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 23 23 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 25 25 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 26 26 H 1.08996 * 109.67768 * 9.69946 * 5 4 3 27 27 H 1.09008 * 109.67362 * 130.24307 * 5 4 3 28 28 H 1.08997 * 109.22355 * 34.74540 * 6 5 4 29 29 H 1.09001 * 109.21936 * 154.08768 * 6 5 4 30 30 H 1.08998 * 108.59031 * 187.92093 * 7 6 5 31 31 H 1.09000 * 108.58850 * 305.61440 * 7 6 5 32 32 H 1.00903 * 111.00138 * 57.30531 * 8 7 6 33 33 H 0.97002 * 120.00594 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.3662 0.8235 0.9704 6 6 4.4959 -0.4784 1.7657 7 6 4.8431 -0.1912 3.2141 8 7 3.7849 0.4862 3.9528 9 6 3.5609 1.8585 3.4799 10 1 4.5078 2.2949 3.1618 11 6 2.9711 2.6868 4.5922 12 1 2.0040 3.1506 4.4655 13 6 3.6659 2.8521 5.7715 14 7 3.1509 3.5745 6.7424 15 14 5.3387 2.0501 5.9905 16 1 6.3984 2.9804 5.5249 17 1 5.5523 1.7346 7.4257 18 1 5.3950 0.7976 5.1946 19 6 2.6003 1.8227 2.3102 20 8 1.4685 2.2372 2.4448 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5400 -0.9354 -0.0045 23 1 1.8500 -0.9353 -0.0004 24 1 2.6212 1.4027 -0.9314 25 1 1.3585 2.1317 0.0896 26 1 4.5649 0.6309 -0.0839 27 1 5.0766 1.5579 1.3502 28 1 3.5510 -1.0201 1.7239 29 1 5.2805 -1.0924 1.3236 30 1 5.0651 -1.1350 3.7120 31 1 5.7379 0.4307 3.2402 32 1 2.9292 -0.0481 3.9305 33 1 3.6394 3.6905 7.5723 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219378357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:31 Heat of formation + Delta-G solvation = 7.348148 kcal Electronic energy + Delta-G solvation = -16234.393531 eV Core-core repulsion = 13682.340010 eV Total energy + Delta-G solvation = -2552.053521 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.84452 -36.29227 -35.62184 -33.19572 -32.22253 -30.67215 -27.97820 -25.96632 -24.44754 -22.67024 -20.95016 -19.83666 -18.36642 -17.47328 -16.21412 -15.82517 -15.06852 -14.64369 -14.44082 -13.98749 -13.63986 -13.44885 -13.05510 -12.93273 -12.23761 -11.99312 -11.80134 -11.65149 -11.16656 -11.02555 -10.76613 -10.48704 -10.28497 -9.86595 -9.43915 -9.08656 -8.92174 -8.44391 -8.28369 -7.25360 -5.92789 -4.00611 2.30162 3.41694 3.50047 3.58371 3.60297 3.80243 4.69229 4.95033 4.96573 5.04028 5.12722 5.22894 5.29513 5.44448 5.58096 5.68546 5.78841 5.86979 5.91034 5.92849 6.06566 6.18063 6.42664 6.50666 6.67196 6.79340 6.96975 7.48365 7.92409 8.05003 8.13736 8.62053 9.05137 9.21605 9.69831 11.17076 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034613 B = 0.010535 C = 0.008840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.748113 B = 2657.283080 C = 3166.803322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.171 4.171 3 C 0.140 3.860 4 N -0.623 5.623 5 C 0.113 3.887 6 C -0.175 4.175 7 C 0.049 3.951 8 N -0.660 5.660 9 C 0.185 3.815 10 H 0.050 0.950 11 C -0.506 4.506 12 H 0.087 0.913 13 C 0.086 3.914 14 N -0.897 5.897 15 Si 0.865 3.135 16 H -0.297 1.297 17 H -0.301 1.301 18 H -0.201 1.201 19 C 0.493 3.507 20 O -0.527 6.527 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.331 0.669 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 -9.323 -13.879 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.191 4.191 3 C 0.017 3.983 4 N -0.359 5.359 5 C -0.010 4.010 6 C -0.215 4.215 7 C -0.082 4.082 8 N -0.292 5.292 9 C 0.075 3.925 10 H 0.068 0.932 11 C -0.544 4.544 12 H 0.105 0.895 13 C -0.118 4.118 14 N -0.534 5.534 15 Si 0.692 3.308 16 H -0.225 1.225 17 H -0.228 1.228 18 H -0.123 1.123 19 C 0.280 3.720 20 O -0.400 6.400 21 H 0.117 0.883 22 H 0.112 0.888 23 H 0.122 0.878 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.634 -8.811 -13.117 16.214 hybrid contribution 0.436 -0.637 -0.607 0.982 sum 4.070 -9.448 -13.724 17.152 Atomic orbital electron populations 1.23835 0.95958 1.01775 0.99636 1.23276 0.96295 0.98757 1.00728 1.20476 0.92953 0.95824 0.89041 1.48317 1.12307 1.63809 1.11446 1.21767 0.83511 0.95540 1.00154 1.22577 1.02334 0.97570 0.99066 1.21687 0.96995 0.99263 0.90219 1.61370 1.10468 1.03519 1.53847 1.19920 0.93796 0.88051 0.90713 0.93230 1.20765 1.07163 1.28799 0.97693 0.89510 1.24928 0.98467 0.93425 0.94960 1.69954 1.38802 1.39206 1.05404 0.87242 0.82747 0.83202 0.77609 1.22481 1.22772 1.12260 1.22445 0.90349 0.75486 0.83719 1.90581 1.21160 1.45605 1.82633 0.88332 0.88762 0.87841 0.90681 0.89773 0.90516 0.90718 0.91647 0.91078 0.91800 0.91656 0.84987 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 14.32 29.02 0.42 -1.87 16 2 C -0.17 -2.30 9.85 -36.02 -0.35 -2.66 16 3 C 0.14 2.02 5.85 -5.19 -0.03 1.99 16 4 N -0.62 -10.44 2.46 -174.42 -0.43 -10.87 16 5 C 0.11 1.50 5.95 -3.58 -0.02 1.47 16 6 C -0.17 -2.22 5.85 -27.34 -0.16 -2.38 16 7 C 0.05 0.77 4.68 -5.11 -0.02 0.74 16 8 N -0.66 -13.47 3.81 -110.43 -0.42 -13.89 16 9 C 0.18 4.29 1.47 -69.69 -0.10 4.19 16 10 H 0.05 1.12 6.13 -51.93 -0.32 0.81 16 11 C -0.51 -14.74 9.16 -34.44 -0.32 -15.06 16 12 H 0.09 2.90 7.07 -52.49 -0.37 2.53 16 13 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 14 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 15 Si 0.86 21.12 26.90 -169.99 -4.57 16.55 16 16 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 18 H -0.20 -4.34 3.56 56.52 0.20 -4.14 16 19 C 0.49 10.87 6.79 -11.16 -0.08 10.79 16 20 O -0.53 -13.73 15.09 5.56 0.08 -13.64 16 21 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 22 H 0.09 1.07 8.06 -52.48 -0.42 0.64 16 23 H 0.10 1.27 8.06 -52.49 -0.42 0.85 16 24 H 0.08 0.85 7.88 -51.93 -0.41 0.44 16 25 H 0.08 1.38 7.05 -51.93 -0.37 1.01 16 26 H 0.08 0.78 7.79 -51.93 -0.40 0.37 16 27 H 0.07 1.02 6.77 -51.92 -0.35 0.67 16 28 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.03 7.21 -51.93 -0.37 0.66 16 32 H 0.33 6.79 8.52 -39.29 -0.33 6.45 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 264.39 15.07 3.98 3.98 Total: -1.00 -33.78 264.39 -6.13 -39.91 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.79 Total: 5.82 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.77 Total: -0.35 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.08 Total: -52.27 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.57 Total: 16.55 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.78 -6.13 -39.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219378357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.260 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds