Wall clock time and date at job start Mon Mar 30 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46500 * 109.46883 * 124.99760 * 3 2 1 5 5 C 1.47250 * 120.07009 * 90.00752 * 4 3 2 6 6 C 1.53107 * 108.40046 * 249.96801 * 5 4 3 7 7 C 1.51687 * 110.75513 * 274.41699 * 6 5 4 8 8 N 1.45749 * 113.93830 * 66.76495 * 7 6 5 9 9 C 1.46870 * 112.44313 * 292.28299 * 8 7 6 10 10 H 1.09004 * 109.60554 * 325.86252 * 9 8 7 11 11 C 1.50703 * 109.60694 * 205.54276 * 9 8 7 12 12 H 1.07998 * 119.99704 * 240.00719 * 11 9 8 13 13 C 1.37872 * 119.99587 * 59.99382 * 11 9 8 14 14 N 1.31517 * 119.99674 * 180.02562 * 13 11 9 15 15 Si 1.86799 * 120.00641 * 0.02562 * 13 11 9 16 16 H 1.48501 * 109.47090 * 89.99337 * 15 13 11 17 17 H 1.48497 * 109.47321 * 210.00063 * 15 13 11 18 18 H 1.48504 * 109.46556 * 329.99836 * 15 13 11 19 19 C 1.33607 * 120.07531 * 269.72314 * 4 3 2 20 20 O 1.21280 * 119.88421 * 0.54423 * 19 4 3 21 21 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 23 23 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 25 25 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 26 26 H 1.08996 * 109.67768 * 9.69946 * 5 4 3 27 27 H 1.09008 * 109.67362 * 130.24307 * 5 4 3 28 28 H 1.08997 * 109.22355 * 34.74540 * 6 5 4 29 29 H 1.09001 * 109.21936 * 154.08768 * 6 5 4 30 30 H 1.08998 * 108.59031 * 187.92093 * 7 6 5 31 31 H 1.09000 * 108.58850 * 305.61440 * 7 6 5 32 32 H 1.00903 * 111.00138 * 57.30531 * 8 7 6 33 33 H 0.97002 * 120.00594 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.3662 0.8235 0.9704 6 6 4.4959 -0.4784 1.7657 7 6 4.8431 -0.1912 3.2141 8 7 3.7849 0.4862 3.9528 9 6 3.5609 1.8585 3.4799 10 1 4.5078 2.2949 3.1618 11 6 2.9711 2.6868 4.5922 12 1 2.0040 3.1506 4.4655 13 6 3.6659 2.8521 5.7715 14 7 3.1509 3.5745 6.7424 15 14 5.3387 2.0501 5.9905 16 1 6.3984 2.9804 5.5249 17 1 5.5523 1.7346 7.4257 18 1 5.3950 0.7976 5.1946 19 6 2.6003 1.8227 2.3102 20 8 1.4685 2.2372 2.4448 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5400 -0.9354 -0.0045 23 1 1.8500 -0.9353 -0.0004 24 1 2.6212 1.4027 -0.9314 25 1 1.3585 2.1317 0.0896 26 1 4.5649 0.6309 -0.0839 27 1 5.0766 1.5579 1.3502 28 1 3.5510 -1.0201 1.7239 29 1 5.2805 -1.0924 1.3236 30 1 5.0651 -1.1350 3.7120 31 1 5.7379 0.4307 3.2402 32 1 2.9292 -0.0481 3.9305 33 1 3.6394 3.6905 7.5723 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219378357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:31 Heat of formation + Delta-G solvation = -18.626204 kcal Electronic energy + Delta-G solvation = -16235.519864 eV Core-core repulsion = 13682.340010 eV Total energy + Delta-G solvation = -2553.179853 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36740 -37.83172 -37.03124 -34.75297 -33.95015 -32.22150 -29.49248 -27.51578 -25.79497 -24.42420 -22.23632 -20.93713 -19.86782 -19.31587 -17.76108 -17.48818 -16.44485 -16.34568 -15.89374 -15.39696 -14.90772 -14.86858 -14.78642 -14.22363 -13.74908 -13.53580 -13.25151 -12.98936 -12.70059 -12.39579 -12.28214 -12.12274 -11.76700 -11.47375 -11.14875 -10.84089 -10.63042 -10.33499 -9.66348 -8.86554 -8.18693 -6.33441 1.23002 1.52443 1.57792 1.78774 1.89463 2.28884 2.62169 3.13831 3.72385 3.77804 3.96189 4.03469 4.08952 4.24889 4.35525 4.47803 4.70753 4.71898 4.74181 4.80604 4.91729 4.97941 5.16252 5.33713 5.45658 5.61687 5.66717 5.84441 6.22520 6.31880 6.43283 6.72882 6.86600 7.36453 7.47594 8.95928 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034613 B = 0.010535 C = 0.008840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.748113 B = 2657.283080 C = 3166.803322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.173 4.173 3 C 0.135 3.865 4 N -0.609 5.609 5 C 0.101 3.899 6 C -0.164 4.164 7 C 0.039 3.961 8 N -0.673 5.673 9 C 0.194 3.806 10 H 0.065 0.935 11 C -0.518 4.518 12 H 0.020 0.980 13 C 0.020 3.980 14 N -0.957 5.957 15 Si 0.942 3.058 16 H -0.292 1.292 17 H -0.313 1.313 18 H -0.151 1.151 19 C 0.488 3.512 20 O -0.586 6.586 21 H 0.083 0.917 22 H 0.114 0.886 23 H 0.126 0.874 24 H 0.117 0.883 25 H 0.053 0.947 26 H 0.121 0.879 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.330 0.670 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 -12.480 -16.372 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.192 4.192 3 C 0.013 3.987 4 N -0.343 5.343 5 C -0.020 4.020 6 C -0.204 4.204 7 C -0.090 4.090 8 N -0.304 5.304 9 C 0.084 3.916 10 H 0.082 0.918 11 C -0.557 4.557 12 H 0.038 0.962 13 C -0.177 4.177 14 N -0.597 5.597 15 Si 0.765 3.235 16 H -0.220 1.220 17 H -0.241 1.241 18 H -0.071 1.071 19 C 0.275 3.725 20 O -0.464 6.464 21 H 0.101 0.899 22 H 0.133 0.867 23 H 0.144 0.856 24 H 0.135 0.865 25 H 0.072 0.928 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.777 -12.008 -15.686 20.885 hybrid contribution -0.617 0.366 0.076 0.722 sum 6.160 -11.641 -15.610 20.424 Atomic orbital electron populations 1.23996 0.96374 1.02114 0.99514 1.23342 0.96282 0.98850 1.00752 1.20685 0.92844 0.95609 0.89572 1.48261 1.14243 1.61734 1.10020 1.22208 0.80787 0.95719 1.03265 1.22448 1.03592 0.97514 0.96799 1.21911 0.95041 0.99788 0.92259 1.60965 1.11615 1.02321 1.55527 1.19508 0.93927 0.88987 0.89221 0.91759 1.20920 1.04827 1.29865 1.00081 0.96199 1.26059 1.03567 0.93944 0.94159 1.70144 1.41245 1.41882 1.06391 0.86155 0.76139 0.83931 0.77265 1.21968 1.24142 1.07147 1.22232 0.89259 0.75712 0.85270 1.90564 1.23348 1.48584 1.83898 0.89892 0.86735 0.85578 0.86474 0.92838 0.86038 0.90858 0.92158 0.86682 0.89500 0.90913 0.85208 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.57 14.32 67.79 0.97 -3.60 16 2 C -0.17 -4.20 9.85 25.65 0.25 -3.95 16 3 C 0.13 3.59 5.85 85.63 0.50 4.10 16 4 N -0.61 -18.90 2.46 -824.79 -2.03 -20.93 16 5 C 0.10 2.13 5.95 86.27 0.51 2.64 16 6 C -0.16 -3.14 5.85 30.20 0.18 -2.96 16 7 C 0.04 1.02 4.68 86.09 0.40 1.42 16 8 N -0.67 -25.74 3.81 -503.28 -1.92 -27.66 16 9 C 0.19 8.93 1.47 43.65 0.06 9.00 16 10 H 0.06 2.78 6.13 -2.39 -0.01 2.76 16 11 C -0.52 -31.70 9.16 25.60 0.23 -31.47 16 12 H 0.02 1.44 7.07 -2.91 -0.02 1.42 16 13 C 0.02 1.22 5.47 84.65 0.46 1.68 16 14 N -0.96 -63.62 13.96 21.45 0.30 -63.32 16 15 Si 0.94 43.71 26.90 68.60 1.85 45.56 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 18 H -0.15 -5.77 3.56 99.48 0.35 -5.41 16 19 C 0.49 21.62 6.79 88.06 0.60 22.22 16 20 O -0.59 -32.21 15.09 -3.03 -0.05 -32.25 16 21 H 0.08 2.31 7.84 -2.91 -0.02 2.29 16 22 H 0.11 2.37 8.06 -2.91 -0.02 2.34 16 23 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 24 H 0.12 2.14 7.88 -2.39 -0.02 2.13 16 25 H 0.05 1.77 7.05 -2.38 -0.02 1.75 16 26 H 0.12 1.57 7.79 -2.39 -0.02 1.55 16 27 H 0.07 1.63 6.77 -2.38 -0.02 1.61 16 28 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.84 7.21 -2.39 -0.02 1.82 16 32 H 0.33 12.99 8.52 -89.69 -0.76 12.23 16 33 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -81.80 264.39 2.31 -79.48 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.02 Total: 20.05 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.18 Total: -0.93 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -3.64 Total: -111.91 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.85 Total: 45.56 kcal Total: -81.80 2.31 -79.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219378357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.858 kcal (2) G-P(sol) polarization free energy of solvation -81.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds