Wall clock time and date at job start Mon Mar 30 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99971 * 2 1 4 4 N 1.46498 * 109.47347 * 125.00153 * 3 2 1 5 5 C 1.47294 * 120.10977 * 270.04265 * 4 3 2 6 6 C 1.53110 * 108.35971 * 250.04202 * 5 4 3 7 7 C 1.51678 * 110.71983 * 274.34021 * 6 5 4 8 8 N 1.45755 * 113.93660 * 66.79658 * 7 6 5 9 9 C 1.46878 * 112.44067 * 292.28447 * 8 7 6 10 10 H 1.08997 * 109.60047 * 205.54180 * 9 8 7 11 11 C 1.50708 * 109.59646 * 326.01930 * 9 8 7 12 12 H 1.08000 * 119.99968 * 354.54446 * 11 9 8 13 13 C 1.37873 * 119.99656 * 174.54703 * 11 9 8 14 14 N 1.31513 * 120.00684 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99527 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47248 * 60.00155 * 15 13 11 17 17 H 1.48505 * 109.47071 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47312 * 299.99787 * 15 13 11 19 19 C 1.33613 * 120.07490 * 89.99289 * 4 3 2 20 20 O 1.21281 * 119.88806 * 0.52527 * 19 4 3 21 21 H 1.07991 * 120.00056 * 180.02562 * 1 2 3 22 22 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.00119 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47282 * 4.99729 * 3 2 1 25 25 H 1.09007 * 109.46909 * 244.99694 * 3 2 1 26 26 H 1.09001 * 109.73530 * 130.30452 * 5 4 3 27 27 H 1.09007 * 109.65755 * 9.73427 * 5 4 3 28 28 H 1.09004 * 109.21527 * 154.03628 * 6 5 4 29 29 H 1.08998 * 109.22185 * 34.65594 * 6 5 4 30 30 H 1.09000 * 108.59008 * 187.94253 * 7 6 5 31 31 H 1.08993 * 108.59655 * 305.64177 * 7 6 5 32 32 H 1.00893 * 111.00303 * 167.25960 * 8 7 6 33 33 H 0.96995 * 120.00650 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5589 1.8665 2.4332 6 6 3.2824 3.1939 2.6756 7 6 4.6427 2.9567 3.3034 8 7 5.5880 2.2765 2.4270 9 6 5.2001 0.8862 2.1552 10 1 6.0859 0.3009 1.9087 11 6 4.5265 0.3025 3.3705 12 1 4.4768 0.8727 4.2864 13 6 3.9737 -0.9592 3.3129 14 7 4.0337 -1.6533 2.1975 15 14 3.1394 -1.6829 4.8195 16 1 2.0059 -0.8128 5.2236 17 1 2.6306 -3.0408 4.4992 18 1 4.1178 -1.7704 5.9331 19 6 4.2392 0.8706 0.9853 20 8 4.6014 0.4381 -0.0883 21 1 -0.5400 -0.9352 0.0004 22 1 -0.5399 0.9354 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1317 0.0895 25 1 2.6214 1.4026 -0.9314 26 1 2.8121 1.1606 3.2241 27 1 1.4816 2.0327 2.4199 28 1 2.6824 3.8130 3.3425 29 1 3.4112 3.7112 1.7249 30 1 5.0656 3.9195 3.5902 31 1 4.5101 2.3570 4.2038 32 1 6.5247 2.3245 2.7988 33 1 3.6445 -2.5408 2.1569 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219378438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:33 Heat of formation + Delta-G solvation = 3.491893 kcal Electronic energy + Delta-G solvation = -16674.110748 eV Core-core repulsion = 14121.890008 eV Total energy + Delta-G solvation = -2552.220741 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19730 -35.94730 -34.96190 -32.73441 -32.39345 -30.14196 -27.54020 -25.30918 -24.15542 -23.16399 -19.88147 -19.47059 -17.86626 -17.05961 -16.04976 -15.26252 -14.75198 -14.72616 -14.11076 -13.80354 -13.25642 -12.75170 -12.57547 -12.31691 -11.93125 -11.72936 -11.24044 -11.12946 -10.91562 -10.80182 -10.63915 -10.41583 -10.07145 -9.83242 -9.74078 -8.97163 -8.74126 -8.32206 -7.44951 -7.25641 -6.19426 -4.28855 2.75970 3.15971 3.23367 3.24367 4.19823 4.30045 4.41636 5.03483 5.35864 5.48819 5.63434 5.73358 5.76884 5.92865 6.16702 6.24891 6.35819 6.45455 6.53592 6.56710 6.67402 6.72080 7.08522 7.16214 7.20545 7.28305 7.64579 7.73490 7.82008 8.05912 8.38353 8.66721 8.86462 9.29079 9.84835 10.80899 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.016584 C = 0.012231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.640711 B = 1688.015302 C = 2288.670147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.133 4.133 3 C 0.142 3.858 4 N -0.596 5.596 5 C 0.094 3.906 6 C -0.125 4.125 7 C 0.064 3.936 8 N -0.693 5.693 9 C 0.201 3.799 10 H 0.062 0.938 11 C -0.563 4.563 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.857 5.857 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.573 3.427 20 O -0.581 6.581 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.114 0.886 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.335 0.665 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 6.384 1.980 8.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.152 4.152 3 C 0.019 3.981 4 N -0.328 5.328 5 C -0.028 4.028 6 C -0.164 4.164 7 C -0.066 4.066 8 N -0.324 5.324 9 C 0.090 3.910 10 H 0.079 0.921 11 C -0.601 4.601 12 H 0.095 0.905 13 C -0.135 4.135 14 N -0.491 5.491 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.363 3.637 20 O -0.459 6.459 21 H 0.108 0.892 22 H 0.107 0.893 23 H 0.132 0.868 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.144 0.856 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.885 6.207 0.746 7.934 hybrid contribution -0.499 -1.043 1.667 2.029 sum -5.384 5.164 2.413 7.840 Atomic orbital electron populations 1.23615 0.95764 1.00864 1.05308 1.23586 0.95756 1.00410 0.95487 1.20364 0.91973 0.93783 0.91997 1.47525 1.11789 1.63269 1.10227 1.22401 0.95851 0.96208 0.88329 1.21697 0.96296 0.97794 1.00663 1.21275 0.92931 0.96512 0.95871 1.59664 1.04706 1.17852 1.50198 1.19436 0.94614 0.84849 0.92132 0.92063 1.21426 1.39582 1.01318 0.97819 0.90489 1.25038 0.95800 0.96669 0.95950 1.69949 1.42170 1.11724 1.25254 0.86723 0.79998 0.78758 0.83121 1.19813 1.21045 1.19961 1.20871 0.81577 0.72397 0.88819 1.90469 1.77992 1.47879 1.29581 0.89200 0.89276 0.86832 0.91847 0.90091 0.85612 0.93301 0.92141 0.92358 0.93728 0.93360 0.84792 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.52 14.32 29.01 0.42 -3.11 16 2 C -0.13 -2.60 9.85 -36.02 -0.35 -2.96 16 3 C 0.14 2.81 5.80 -5.19 -0.03 2.78 16 4 N -0.60 -13.33 2.46 -174.38 -0.43 -13.76 16 5 C 0.09 1.88 5.86 -3.55 -0.02 1.85 16 6 C -0.13 -2.19 5.86 -27.34 -0.16 -2.35 16 7 C 0.06 1.15 5.82 -5.11 -0.03 1.12 16 8 N -0.69 -14.35 6.50 -110.43 -0.72 -15.07 16 9 C 0.20 4.99 3.11 -69.68 -0.22 4.77 16 10 H 0.06 1.69 8.13 -51.93 -0.42 1.27 16 11 C -0.56 -13.85 4.92 -34.44 -0.17 -14.02 16 12 H 0.08 1.81 5.16 -52.49 -0.27 1.54 16 13 C 0.07 1.86 4.84 -17.82 -0.09 1.78 16 14 N -0.86 -23.79 12.13 55.43 0.67 -23.11 16 15 Si 0.89 19.75 29.53 -169.99 -5.02 14.73 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.57 14.89 5.19 -11.16 -0.06 14.84 16 20 O -0.58 -17.02 16.63 5.56 0.09 -16.93 16 21 H 0.09 1.35 8.06 -52.49 -0.42 0.93 16 22 H 0.09 1.26 7.84 -52.49 -0.41 0.85 16 23 H 0.11 2.59 8.06 -52.49 -0.42 2.17 16 24 H 0.06 1.05 7.68 -51.93 -0.40 0.65 16 25 H 0.08 1.69 7.40 -51.92 -0.38 1.31 16 26 H 0.13 2.80 4.15 -51.93 -0.22 2.59 16 27 H 0.05 0.86 7.93 -51.92 -0.41 0.45 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.92 5.19 -51.93 -0.27 0.65 16 32 H 0.34 6.22 8.89 -39.30 -0.35 5.87 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 265.26 15.07 4.00 4.00 Total: -1.00 -29.67 265.26 -6.49 -36.16 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.38 Total: 9.27 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.71 Total: 4.71 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.47 Total: -51.94 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.09 Total: -16.93 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.67 -6.49 -36.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219378438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.656 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds