Wall clock time and date at job start Mon Mar 30 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99971 * 2 1 4 4 N 1.46498 * 109.47347 * 125.00153 * 3 2 1 5 5 C 1.47294 * 120.10977 * 270.04265 * 4 3 2 6 6 C 1.53110 * 108.35971 * 250.04202 * 5 4 3 7 7 C 1.51678 * 110.71983 * 274.34021 * 6 5 4 8 8 N 1.45755 * 113.93660 * 66.79658 * 7 6 5 9 9 C 1.46878 * 112.44067 * 292.28447 * 8 7 6 10 10 H 1.08997 * 109.60047 * 205.54180 * 9 8 7 11 11 C 1.50708 * 109.59646 * 326.01930 * 9 8 7 12 12 H 1.08000 * 119.99968 * 354.54446 * 11 9 8 13 13 C 1.37873 * 119.99656 * 174.54703 * 11 9 8 14 14 N 1.31513 * 120.00684 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99527 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47248 * 60.00155 * 15 13 11 17 17 H 1.48505 * 109.47071 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47312 * 299.99787 * 15 13 11 19 19 C 1.33613 * 120.07490 * 89.99289 * 4 3 2 20 20 O 1.21281 * 119.88806 * 0.52527 * 19 4 3 21 21 H 1.07991 * 120.00056 * 180.02562 * 1 2 3 22 22 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.00119 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47282 * 4.99729 * 3 2 1 25 25 H 1.09007 * 109.46909 * 244.99694 * 3 2 1 26 26 H 1.09001 * 109.73530 * 130.30452 * 5 4 3 27 27 H 1.09007 * 109.65755 * 9.73427 * 5 4 3 28 28 H 1.09004 * 109.21527 * 154.03628 * 6 5 4 29 29 H 1.08998 * 109.22185 * 34.65594 * 6 5 4 30 30 H 1.09000 * 108.59008 * 187.94253 * 7 6 5 31 31 H 1.08993 * 108.59655 * 305.64177 * 7 6 5 32 32 H 1.00893 * 111.00303 * 167.25960 * 8 7 6 33 33 H 0.96995 * 120.00650 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5589 1.8665 2.4332 6 6 3.2824 3.1939 2.6756 7 6 4.6427 2.9567 3.3034 8 7 5.5880 2.2765 2.4270 9 6 5.2001 0.8862 2.1552 10 1 6.0859 0.3009 1.9087 11 6 4.5265 0.3025 3.3705 12 1 4.4768 0.8727 4.2864 13 6 3.9737 -0.9592 3.3129 14 7 4.0337 -1.6533 2.1975 15 14 3.1394 -1.6829 4.8195 16 1 2.0059 -0.8128 5.2236 17 1 2.6306 -3.0408 4.4992 18 1 4.1178 -1.7704 5.9331 19 6 4.2392 0.8706 0.9853 20 8 4.6014 0.4381 -0.0883 21 1 -0.5400 -0.9352 0.0004 22 1 -0.5399 0.9354 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1317 0.0895 25 1 2.6214 1.4026 -0.9314 26 1 2.8121 1.1606 3.2241 27 1 1.4816 2.0327 2.4199 28 1 2.6824 3.8130 3.3425 29 1 3.4112 3.7112 1.7249 30 1 5.0656 3.9195 3.5902 31 1 4.5101 2.3570 4.2038 32 1 6.5247 2.3245 2.7988 33 1 3.6445 -2.5408 2.1569 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219378438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:33 Heat of formation + Delta-G solvation = -18.299197 kcal Electronic energy + Delta-G solvation = -16675.055681 eV Core-core repulsion = 14121.890008 eV Total energy + Delta-G solvation = -2553.165673 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99754 -37.73813 -36.67778 -34.59052 -33.99649 -31.81003 -29.27976 -27.06293 -25.79811 -24.91276 -21.44548 -21.02278 -19.65911 -18.89600 -17.75398 -17.00369 -16.61403 -16.37073 -15.72071 -15.50414 -14.98085 -14.39622 -14.17437 -13.89982 -13.67888 -13.56166 -12.95701 -12.75604 -12.63946 -12.38106 -12.23491 -12.05569 -11.75942 -11.51807 -11.42143 -10.72287 -10.49273 -10.17140 -9.20876 -8.99280 -8.13280 -6.29374 1.32648 1.41051 1.42408 1.49513 2.32687 2.41205 2.73710 3.10950 3.73783 4.03867 4.16655 4.31188 4.33955 4.47949 4.69558 4.75000 4.81668 4.92958 5.02441 5.10838 5.13789 5.20706 5.23419 5.68064 5.69074 5.70991 5.81359 5.87181 6.17044 6.24672 6.76471 6.81788 7.01370 7.32280 7.91131 8.84887 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.019310 B = 0.016584 C = 0.012231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.640711 B = 1688.015302 C = 2288.670147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.175 4.175 3 C 0.143 3.857 4 N -0.594 5.594 5 C 0.086 3.914 6 C -0.120 4.120 7 C 0.058 3.942 8 N -0.695 5.695 9 C 0.200 3.800 10 H 0.015 0.985 11 C -0.551 4.551 12 H 0.094 0.906 13 C 0.026 3.974 14 N -0.900 5.900 15 Si 0.950 3.050 16 H -0.254 1.254 17 H -0.297 1.297 18 H -0.268 1.268 19 C 0.564 3.436 20 O -0.632 6.632 21 H 0.102 0.898 22 H 0.125 0.875 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.345 0.655 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 8.528 3.881 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.195 4.195 3 C 0.020 3.980 4 N -0.324 5.324 5 C -0.035 4.035 6 C -0.158 4.158 7 C -0.070 4.070 8 N -0.328 5.328 9 C 0.089 3.911 10 H 0.033 0.967 11 C -0.589 4.589 12 H 0.111 0.889 13 C -0.177 4.177 14 N -0.536 5.536 15 Si 0.774 3.226 16 H -0.178 1.178 17 H -0.223 1.223 18 H -0.193 1.193 19 C 0.355 3.645 20 O -0.516 6.516 21 H 0.121 0.879 22 H 0.143 0.857 23 H 0.084 0.916 24 H 0.124 0.876 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.163 0.837 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.362 8.402 2.694 11.491 hybrid contribution 0.218 -1.666 1.061 1.987 sum -7.144 6.737 3.755 10.513 Atomic orbital electron populations 1.23917 0.94189 1.03106 0.99570 1.23229 0.96946 0.98410 1.00867 1.20506 0.91916 0.95412 0.90162 1.47589 1.10975 1.61867 1.11963 1.22526 0.98045 0.96742 0.86181 1.21699 0.96074 0.96722 1.01345 1.21451 0.93162 0.97530 0.94897 1.59626 1.06098 1.15382 1.51664 1.19184 0.92924 0.86720 0.92311 0.96673 1.21641 1.38176 1.01125 0.97955 0.88859 1.25797 0.96533 0.97189 0.98216 1.70146 1.43953 1.11803 1.27715 0.85728 0.79552 0.77511 0.79772 1.17781 1.22344 1.19312 1.21036 0.83137 0.72151 0.88207 1.90421 1.79294 1.50416 1.31441 0.87925 0.85724 0.91584 0.87575 0.92473 0.87916 0.90227 0.87853 0.92961 0.90305 0.93916 0.83690 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 14.32 67.78 0.97 -4.00 16 2 C -0.17 -6.81 9.85 25.65 0.25 -6.56 16 3 C 0.14 5.55 5.80 85.63 0.50 6.04 16 4 N -0.59 -26.36 2.46 -824.66 -2.03 -28.39 16 5 C 0.09 3.19 5.86 86.26 0.51 3.70 16 6 C -0.12 -3.71 5.86 30.20 0.18 -3.53 16 7 C 0.06 1.94 5.82 86.09 0.50 2.44 16 8 N -0.70 -28.44 6.50 -503.28 -3.27 -31.71 16 9 C 0.20 10.25 3.11 43.65 0.14 10.38 16 10 H 0.02 0.90 8.13 -2.39 -0.02 0.88 16 11 C -0.55 -27.07 4.92 25.60 0.13 -26.94 16 12 H 0.09 4.22 5.16 -2.91 -0.02 4.20 16 13 C 0.03 1.32 4.84 84.65 0.41 1.73 16 14 N -0.90 -52.16 12.13 21.45 0.26 -51.90 16 15 Si 0.95 40.29 29.53 68.60 2.03 42.31 16 16 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 17 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 19 C 0.56 30.32 5.19 88.06 0.46 30.78 16 20 O -0.63 -39.39 16.63 -3.03 -0.05 -39.44 16 21 H 0.10 2.75 8.06 -2.92 -0.02 2.73 16 22 H 0.12 2.81 7.84 -2.91 -0.02 2.79 16 23 H 0.07 3.20 8.06 -2.91 -0.02 3.17 16 24 H 0.11 3.15 7.68 -2.39 -0.02 3.14 16 25 H 0.06 2.46 7.40 -2.38 -0.02 2.44 16 26 H 0.10 4.35 4.15 -2.39 -0.01 4.34 16 27 H 0.08 2.43 7.93 -2.38 -0.02 2.42 16 28 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.49 5.19 -2.39 -0.01 1.47 16 32 H 0.35 12.67 8.89 -89.70 -0.80 11.88 16 33 H 0.26 14.76 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -68.74 265.26 1.28 -67.46 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.31 Total: 27.64 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 4.03 Total: 14.04 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -5.04 Total: -112.01 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.05 Total: -39.44 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -68.74 1.28 -67.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219378438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.156 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds