Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48562 * 110.99726 * 2 1 4 4 C 1.54384 * 104.69653 * 159.09816 * 3 2 1 5 5 C 1.54259 * 105.05868 * 336.09351 * 4 3 2 6 6 C 1.48849 * 111.13111 * 115.32181 * 2 1 3 7 7 H 1.08999 * 110.40048 * 319.79895 * 6 2 1 8 8 C 1.50696 * 110.39170 * 82.22062 * 6 2 1 9 9 O 1.21557 * 120.00613 * 15.19927 * 8 6 2 10 10 C 1.40165 * 120.00115 * 195.20472 * 8 6 2 11 11 C 1.39470 * 120.00384 * 175.63585 * 10 8 6 12 12 N 1.38260 * 120.00024 * 172.99089 * 11 10 8 13 13 C 1.40039 * 119.99883 * 352.99200 * 11 10 8 14 14 H 1.07998 * 120.00381 * 326.87842 * 13 11 10 15 15 C 1.40681 * 119.99918 * 146.87445 * 13 11 10 16 16 N 1.30396 * 119.99762 * 170.50850 * 15 13 11 17 17 Si 1.86800 * 120.00183 * 350.51476 * 15 13 11 18 18 H 1.48493 * 109.47009 * 90.27659 * 17 15 13 19 19 H 1.48500 * 109.47123 * 210.27850 * 17 15 13 20 20 H 1.48504 * 109.46780 * 330.27564 * 17 15 13 21 21 H 1.08997 * 109.47120 * 59.87628 * 1 2 3 22 22 H 1.09004 * 109.46966 * 179.86963 * 1 2 3 23 23 H 1.08994 * 109.47277 * 299.86723 * 1 2 3 24 24 H 1.09006 * 110.40978 * 40.26582 * 3 2 1 25 25 H 1.08996 * 110.41553 * 277.94006 * 3 2 1 26 26 H 1.09004 * 110.31967 * 94.98471 * 4 3 2 27 27 H 1.08992 * 110.32087 * 217.19314 * 4 3 2 28 28 H 1.08998 * 110.32710 * 118.89770 * 5 4 3 29 29 H 1.09008 * 110.32321 * 241.00117 * 5 4 3 30 30 H 1.08004 * 119.99890 * 355.63855 * 10 8 6 31 31 H 0.97005 * 120.00010 * 352.87578 * 12 11 10 32 32 H 0.96999 * 120.00166 * 172.87638 * 12 11 10 33 33 H 0.96999 * 119.99665 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4441 1.2528 0.5328 5 6 3.4469 -0.0504 1.3583 6 6 2.0056 -0.5938 1.2550 7 1 1.4148 -0.2696 2.1117 8 6 2.0166 -2.0978 1.1614 9 8 1.8881 -2.6407 0.0814 10 6 2.1748 -2.8710 2.3198 11 6 2.0940 -4.2614 2.2468 12 7 2.3925 -5.0305 3.3563 13 6 1.7105 -4.8785 1.0496 14 1 1.0019 -4.3933 0.3947 15 6 2.2484 -6.1305 0.6999 16 7 1.7595 -6.7901 -0.3132 17 14 3.6627 -6.8481 1.6869 18 1 3.1229 -7.6745 2.7962 19 1 4.5039 -7.6945 0.8029 20 1 4.4857 -5.7456 2.2459 21 1 -0.3633 0.5157 -0.8888 22 1 -0.3633 -1.0277 -0.0023 23 1 -0.3633 0.5117 0.8911 24 1 1.4098 2.0212 0.6603 25 1 2.0059 1.7925 -1.0117 26 1 4.1482 1.1774 -0.2960 27 1 3.6941 2.1032 1.1669 28 1 4.1524 -0.7653 0.9349 29 1 3.7001 0.1603 2.3974 30 1 2.3593 -2.3899 3.2691 31 1 2.7567 -4.6126 4.1524 32 1 2.2378 -5.9879 3.3386 33 1 2.1307 -7.6532 -0.5545 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221912185.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = -42.969957 kcal Electronic energy + Delta-G solvation = -15692.654428 eV Core-core repulsion = 13138.418950 eV Total energy + Delta-G solvation = -2554.235478 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47707 -38.62423 -37.03113 -34.81432 -33.07861 -31.11363 -30.01055 -27.92549 -26.52699 -23.77564 -21.73950 -21.38286 -19.94006 -19.12213 -17.97022 -16.85257 -16.71959 -16.44513 -15.63287 -15.31180 -14.67760 -14.66271 -14.47971 -14.32043 -13.96268 -13.35159 -13.23033 -12.93862 -12.75430 -12.41569 -12.19502 -12.12796 -12.07183 -11.81691 -11.52640 -11.41715 -11.01133 -9.59536 -9.16098 -8.86895 -8.34695 -6.72968 0.96494 1.20363 1.39578 1.51788 2.04229 2.59169 3.06004 3.26490 3.42723 3.85040 3.88589 4.13194 4.39519 4.41624 4.49152 4.53230 4.73105 4.81080 4.93371 4.96225 5.00237 5.04445 5.24527 5.32260 5.45134 5.66533 5.88052 6.03816 6.20635 6.28810 6.39226 6.54710 7.17520 7.29403 8.07109 8.16747 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040599 B = 0.007858 C = 0.007386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.505363 B = 3562.264523 C = 3790.263300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.527 5.527 3 C 0.030 3.970 4 C -0.115 4.115 5 C -0.104 4.104 6 C 0.027 3.973 7 H 0.064 0.936 8 C 0.368 3.632 9 O -0.559 6.559 10 C -0.528 4.528 11 C 0.353 3.647 12 N -0.859 5.859 13 C -0.445 4.445 14 H 0.070 0.930 15 C 0.030 3.970 16 N -0.832 5.832 17 Si 0.981 3.019 18 H -0.230 1.230 19 H -0.286 1.286 20 H -0.253 1.253 21 H 0.082 0.918 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.403 0.597 32 H 0.389 0.611 33 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 8.920 7.520 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.252 5.252 3 C -0.098 4.098 4 C -0.153 4.153 5 C -0.142 4.142 6 C -0.082 4.082 7 H 0.082 0.918 8 C 0.263 3.737 9 O -0.449 6.449 10 C -0.555 4.555 11 C 0.243 3.757 12 N -0.404 5.404 13 C -0.477 4.477 14 H 0.087 0.913 15 C -0.187 4.187 16 N -0.458 5.458 17 Si 0.802 3.198 18 H -0.154 1.154 19 H -0.213 1.213 20 H -0.177 1.177 21 H 0.100 0.900 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.233 0.767 32 H 0.220 0.780 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.573 8.248 6.287 10.969 hybrid contribution -0.143 -0.273 0.846 0.900 sum 3.430 7.975 7.133 11.236 Atomic orbital electron populations 1.22360 0.87963 1.00746 1.01253 1.65199 1.08608 1.15853 1.35493 1.23228 0.95802 0.89038 1.01714 1.22309 0.96201 0.97087 0.99727 1.22107 0.93671 0.97020 1.01388 1.23088 0.97549 0.96253 0.91317 0.91813 1.19862 0.75759 0.89400 0.88727 1.90522 1.46897 1.74529 1.32932 1.20966 1.43604 0.92104 0.98822 1.17637 0.81584 0.90568 0.85931 1.42917 1.72661 1.09757 1.15102 1.19726 1.22901 1.01004 1.04118 0.91252 1.27426 1.00058 0.95104 0.96133 1.69517 1.38370 1.13186 1.24732 0.85324 0.77546 0.78530 0.78412 1.15423 1.21319 1.17695 0.89974 0.94576 0.94308 0.92546 0.89621 0.91263 0.88279 0.93578 0.89123 0.88075 0.76688 0.77998 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.43 127.69 1.20 2.12 16 2 N -0.53 -20.57 4.93 -886.25 -4.37 -24.94 16 3 C 0.03 0.83 6.48 86.45 0.56 1.40 16 4 C -0.12 -3.02 7.00 31.49 0.22 -2.80 16 5 C -0.10 -3.44 6.54 31.49 0.21 -3.24 16 6 C 0.03 1.10 2.56 44.26 0.11 1.22 16 7 H 0.06 2.39 7.91 -2.39 -0.02 2.37 16 8 C 0.37 19.16 5.79 26.15 0.15 19.31 16 9 O -0.56 -34.84 13.58 -3.90 -0.05 -34.90 16 10 C -0.53 -26.04 9.69 23.03 0.22 -25.82 16 11 C 0.35 17.74 5.90 38.86 0.23 17.97 16 12 N -0.86 -33.02 7.05 -51.19 -0.36 -33.38 16 13 C -0.45 -26.05 7.96 23.30 0.19 -25.87 16 14 H 0.07 4.80 6.29 -2.91 -0.02 4.78 16 15 C 0.03 1.60 5.49 85.50 0.47 2.07 16 16 N -0.83 -46.52 13.91 21.95 0.31 -46.21 16 17 Si 0.98 39.34 24.72 68.60 1.70 41.04 16 18 H -0.23 -7.60 6.83 99.48 0.68 -6.92 16 19 H -0.29 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.25 -10.26 6.93 99.48 0.69 -9.57 16 21 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 22 H 0.04 1.53 8.06 -2.38 -0.02 1.51 16 23 H 0.04 1.19 7.98 -2.39 -0.02 1.17 16 24 H 0.06 1.36 7.97 -2.38 -0.02 1.34 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.76 7.85 -2.39 -0.02 1.74 16 29 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 30 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.40 12.47 8.83 -92.70 -0.82 11.65 16 32 H 0.39 13.97 5.53 -92.71 -0.51 13.45 16 33 H 0.30 14.68 8.29 -92.71 -0.77 13.92 16 Total: -1.00 -72.60 269.38 0.52 -72.07 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -0.26 Total: 39.97 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 3.56 Total: -13.64 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -4.42 Total: -104.54 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.05 Total: -34.90 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.70 Total: 41.04 kcal Total: -72.60 0.52 -72.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221912185.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.105 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds