Wall clock time and date at job start Mon Mar 30 2020 03:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48529 * 111.00367 * 2 1 4 4 C 1.54930 * 103.22936 * 159.71809 * 3 2 1 5 5 C 1.54593 * 102.92398 * 322.58453 * 4 3 2 6 6 C 1.47904 * 110.99830 * 117.39478 * 2 1 3 7 7 H 1.09004 * 110.08012 * 333.60330 * 6 2 1 8 8 C 1.50704 * 109.91852 * 94.80121 * 6 2 1 9 9 O 1.21557 * 119.99662 * 17.59340 * 8 6 2 10 10 C 1.40156 * 120.00224 * 197.59217 * 8 6 2 11 11 C 1.39467 * 120.00049 * 174.88591 * 10 8 6 12 12 N 1.38265 * 119.99957 * 352.85791 * 11 10 8 13 13 C 1.40047 * 119.99991 * 173.13594 * 11 10 8 14 14 H 1.08001 * 119.99613 * 342.33752 * 13 11 10 15 15 C 1.40675 * 119.99918 * 162.33793 * 13 11 10 16 16 N 1.30388 * 120.00429 * 345.40856 * 15 13 11 17 17 Si 1.86805 * 119.99840 * 165.41103 * 15 13 11 18 18 H 1.48498 * 109.47121 * 94.97379 * 17 15 13 19 19 H 1.48503 * 109.47180 * 214.97325 * 17 15 13 20 20 H 1.48498 * 109.47256 * 334.97009 * 17 15 13 21 21 H 1.08997 * 109.46875 * 302.60517 * 1 2 3 22 22 H 1.08996 * 109.46464 * 62.60616 * 1 2 3 23 23 H 1.09001 * 109.47135 * 182.60453 * 1 2 3 24 24 H 1.09004 * 110.66437 * 41.28392 * 3 2 1 25 25 H 1.09001 * 110.81179 * 278.22526 * 3 2 1 26 26 H 1.09002 * 110.72398 * 204.22751 * 4 3 2 27 27 H 1.09006 * 110.87750 * 81.01464 * 4 3 2 28 28 H 1.08997 * 110.31489 * 263.04188 * 5 4 3 29 29 H 1.09006 * 110.31143 * 140.87291 * 5 4 3 30 30 H 1.08003 * 120.00099 * 354.88549 * 10 8 6 31 31 H 0.96996 * 119.99830 * 148.51068 * 12 11 10 32 32 H 0.96995 * 119.99856 * 328.51504 * 12 11 10 33 33 H 0.96998 * 120.00463 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3866 0.0000 4 6 3.4492 1.2105 0.5228 5 6 3.2983 0.1053 1.5931 6 6 1.9990 -0.6353 1.2260 7 1 1.2770 -0.5432 2.0374 8 6 2.2937 -2.0899 0.9642 9 8 2.3972 -2.4930 -0.1779 10 6 2.4485 -2.9778 2.0375 11 6 2.6148 -4.3414 1.7961 12 7 2.4801 -4.8377 0.5126 13 6 2.9126 -5.2087 2.8546 14 1 3.2914 -4.8139 3.7858 15 6 2.7185 -6.5939 2.7048 16 7 2.0069 -7.0489 1.7114 17 14 3.4799 -7.7815 3.9293 18 1 2.4853 -8.1138 4.9807 19 1 3.8897 -9.0232 3.2253 20 1 4.6702 -7.1517 4.5552 21 1 -0.3633 0.5537 0.8657 22 1 -0.3632 0.4728 -0.9124 23 1 -0.3633 -1.0266 0.0467 24 1 1.4238 2.0204 0.6729 25 1 2.0041 1.8004 -1.0084 26 1 3.8123 2.1351 0.9716 27 1 4.1141 0.8846 -0.2771 28 1 3.2136 0.5485 2.5854 29 1 4.1470 -0.5776 1.5542 30 1 2.4389 -2.6062 3.0515 31 1 3.0001 -5.6073 0.2333 32 1 1.8656 -4.4162 -0.1083 33 1 1.8734 -8.0040 1.6080 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221912242.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:22 Heat of formation + Delta-G solvation = -44.688095 kcal Electronic energy + Delta-G solvation = -15502.840362 eV Core-core repulsion = 12948.530380 eV Total energy + Delta-G solvation = -2554.309982 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51133 -38.55955 -36.89809 -34.10050 -33.07429 -31.18111 -29.74784 -27.91601 -26.52169 -23.67251 -21.98663 -21.47515 -19.38337 -19.09015 -17.43187 -16.96698 -16.58427 -16.45446 -15.94600 -14.93251 -14.68386 -14.61682 -14.42037 -14.18386 -13.41343 -13.23639 -13.04774 -12.98762 -12.76368 -12.47653 -12.35642 -12.10809 -11.95511 -11.84522 -11.57798 -11.54804 -10.77655 -9.68908 -9.09012 -8.97448 -8.08583 -6.81344 1.06538 1.39445 1.54151 1.64890 2.15236 2.53660 3.11357 3.37114 3.78768 3.87932 3.91546 4.07238 4.33118 4.41367 4.50112 4.54588 4.69325 4.82878 4.92944 4.95779 5.02191 5.03361 5.19946 5.32175 5.63568 5.77270 5.79795 6.10405 6.14473 6.21101 6.61410 6.62547 7.52978 7.68670 8.00597 8.09471 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053281 B = 0.006310 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.391853 B = 4436.089229 C = 4678.398011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.529 5.529 3 C 0.035 3.965 4 C -0.115 4.115 5 C -0.112 4.112 6 C 0.031 3.969 7 H 0.055 0.945 8 C 0.374 3.626 9 O -0.585 6.585 10 C -0.561 4.561 11 C 0.381 3.619 12 N -0.831 5.831 13 C -0.489 4.489 14 H 0.093 0.907 15 C 0.042 3.958 16 N -0.792 5.792 17 Si 0.997 3.003 18 H -0.260 1.260 19 H -0.261 1.261 20 H -0.257 1.257 21 H 0.037 0.963 22 H 0.083 0.917 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.383 0.617 32 H 0.384 0.616 33 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 7.323 1.778 7.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.092 4.092 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.079 4.079 7 H 0.073 0.927 8 C 0.273 3.727 9 O -0.479 6.479 10 C -0.587 4.587 11 C 0.266 3.734 12 N -0.370 5.370 13 C -0.521 4.521 14 H 0.111 0.889 15 C -0.180 4.180 16 N -0.416 5.416 17 Si 0.816 3.184 18 H -0.184 1.184 19 H -0.185 1.185 20 H -0.180 1.180 21 H 0.056 0.944 22 H 0.102 0.898 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.211 0.789 32 H 0.216 0.784 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.503 6.748 0.698 6.803 hybrid contribution -0.362 -0.394 0.979 1.116 sum 0.141 6.354 1.678 6.573 Atomic orbital electron populations 1.22428 0.87571 1.00889 1.01503 1.64471 1.08531 1.15374 1.36941 1.23327 0.95227 0.88929 1.01748 1.22474 0.96523 0.98566 0.97709 1.22230 0.95495 0.97180 1.00099 1.22712 0.97522 0.96429 0.91218 0.92706 1.19896 0.75540 0.88921 0.88391 1.90244 1.51650 1.79806 1.26248 1.21231 1.46741 0.93364 0.97361 1.17926 0.80172 0.90910 0.84419 1.42257 1.47708 1.35309 1.11762 1.20185 1.39744 0.92111 1.00019 0.88940 1.27181 0.91976 1.00695 0.98121 1.69623 1.25460 1.17878 1.28635 0.84972 0.79377 0.76375 0.77708 1.18438 1.18506 1.18012 0.94438 0.89787 0.93999 0.92372 0.89226 0.87927 0.92134 0.89500 0.93006 0.89736 0.78905 0.78432 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 9.40 127.69 1.20 2.01 16 2 N -0.53 -19.95 4.75 -888.44 -4.22 -24.17 16 3 C 0.03 0.98 6.56 86.65 0.57 1.55 16 4 C -0.11 -3.21 7.06 31.80 0.22 -2.98 16 5 C -0.11 -3.85 6.56 31.47 0.21 -3.64 16 6 C 0.03 1.27 2.74 44.31 0.12 1.39 16 7 H 0.06 2.21 7.74 -2.38 -0.02 2.19 16 8 C 0.37 19.35 5.87 26.15 0.15 19.50 16 9 O -0.59 -33.32 14.03 -3.89 -0.05 -33.38 16 10 C -0.56 -30.35 9.51 23.03 0.22 -30.13 16 11 C 0.38 20.98 6.51 38.86 0.25 21.23 16 12 N -0.83 -43.92 6.70 -51.18 -0.34 -44.27 16 13 C -0.49 -25.36 9.07 23.30 0.21 -25.15 16 14 H 0.09 4.63 7.90 -2.91 -0.02 4.61 16 15 C 0.04 1.94 5.28 85.50 0.45 2.40 16 16 N -0.79 -37.49 11.33 21.95 0.25 -37.24 16 17 Si 1.00 34.57 29.59 68.60 2.03 36.59 16 18 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 19 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 20 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 21 H 0.04 1.07 8.01 -2.39 -0.02 1.05 16 22 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.06 1.40 7.96 -2.39 -0.02 1.38 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.05 2.01 7.68 -2.38 -0.02 1.99 16 30 H 0.08 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.38 19.35 7.70 -92.71 -0.71 18.64 16 32 H 0.38 20.88 6.77 -92.71 -0.63 20.25 16 33 H 0.30 12.53 8.29 -92.71 -0.77 11.76 16 Total: -1.00 -62.49 275.26 1.04 -61.46 By element: Atomic # 1 Polarization: 55.06 SS G_CDS: -0.23 Total: 54.83 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.61 Total: -13.82 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.32 Total: -105.68 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.05 Total: -33.38 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.59 kcal Total: -62.49 1.04 -61.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221912242.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.767 kcal (2) G-P(sol) polarization free energy of solvation -62.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds