Wall clock time and date at job start Mon Mar 30 2020 03:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46898 * 2 1 4 4 C 1.50698 * 109.47013 * 239.99354 * 2 1 3 5 5 H 1.07996 * 120.00201 * 239.99938 * 4 2 1 6 6 C 1.37879 * 119.99659 * 60.00510 * 4 2 1 7 7 N 1.31511 * 120.00333 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99388 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47275 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46937 * 120.00298 * 8 6 4 11 11 H 1.48508 * 109.46673 * 239.99421 * 8 6 4 12 12 N 1.46503 * 109.46700 * 119.99304 * 2 1 3 13 13 C 1.34777 * 120.00239 * 274.99795 * 12 2 1 14 14 O 1.21277 * 119.99984 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99796 * 180.02562 * 13 12 2 16 16 H 1.08993 * 110.43759 * 299.10631 * 15 13 12 17 17 C 1.51101 * 110.38852 * 61.45591 * 15 13 12 18 18 C 1.30525 * 111.10317 * 102.12509 * 17 15 13 19 19 C 1.51099 * 111.10506 * 0.25074 * 18 17 15 20 20 H 1.09001 * 110.38605 * 257.50906 * 19 18 17 21 21 N 1.46900 * 110.38976 * 135.24608 * 19 18 17 22 22 C 1.54635 * 104.72863 * 16.42949 * 19 18 17 23 23 H 1.08996 * 109.47606 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47368 * 300.00610 * 1 2 3 25 25 H 1.09005 * 109.46836 * 60.00346 * 1 2 3 26 26 H 0.97000 * 120.00162 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99288 * 95.00014 * 12 2 1 28 28 H 1.08002 * 124.45105 * 282.40042 * 17 15 13 29 29 H 1.07999 * 124.44852 * 180.22364 * 18 17 15 30 30 H 1.00896 * 111.00300 * 61.45460 * 21 19 18 31 31 H 1.00907 * 111.00051 * 185.40620 * 21 19 18 32 32 H 1.09005 * 111.03380 * 93.39919 * 22 19 18 33 33 H 1.08988 * 111.04122 * 217.29818 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 3.1483 -2.2860 -3.6035 10 1 1.1677 -1.5869 -4.8164 11 1 3.1473 -0.1861 -4.8160 12 7 2.0182 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8582 1.1586 2.4117 15 6 2.6497 -0.7283 3.5876 16 1 1.9796 -1.5448 3.8562 17 6 4.0495 -1.2495 3.3594 18 6 4.9360 -0.4829 3.9339 19 6 4.2748 0.6742 4.6461 20 1 4.3712 1.5870 4.0582 21 7 4.8653 0.8599 5.9783 22 6 2.7890 0.2635 4.7680 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7082 1.1607 -3.4845 27 1 2.2489 -1.6317 1.1528 28 1 4.2858 -2.1373 2.7915 29 1 6.0020 -0.6534 3.9045 30 1 5.8485 1.0766 5.9111 31 1 4.3727 1.5722 6.4961 32 1 2.5958 -0.2278 5.7216 33 1 2.1331 1.1235 4.6334 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227263235.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:08 Heat of formation + Delta-G solvation = -25.884260 kcal Electronic energy + Delta-G solvation = -15412.317955 eV Core-core repulsion = 12858.823369 eV Total energy + Delta-G solvation = -2553.494586 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.82116 -37.43286 -34.73732 -32.91641 -32.22060 -29.32161 -28.63617 -25.99131 -25.23474 -22.13509 -20.29234 -19.36981 -18.73668 -17.22204 -16.07318 -15.89831 -15.20628 -15.17234 -14.79454 -14.19263 -13.60316 -13.09777 -12.41254 -12.27105 -11.87550 -11.64432 -11.33982 -11.12323 -11.09976 -10.97622 -10.90570 -10.66267 -10.30153 -10.23643 -9.69733 -9.03166 -8.85661 -8.55715 -8.43410 -7.87761 -6.12086 -4.21160 2.29533 3.23425 3.31175 3.33986 3.45235 4.14939 4.40165 4.57652 4.70778 4.79666 5.20189 5.23410 5.41715 5.59020 5.68467 5.80896 5.97422 6.16655 6.30265 6.49210 6.83528 6.91885 6.97973 7.09757 7.16408 7.37630 7.48605 7.58182 7.70752 7.92897 8.15922 8.70051 8.79425 9.16099 9.46708 10.93977 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045163 B = 0.006397 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.829978 B = 4375.871394 C = 4670.581614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.513 3.487 14 O -0.556 6.556 15 C -0.092 4.092 16 H 0.099 0.901 17 C -0.147 4.147 18 C -0.149 4.149 19 C 0.107 3.893 20 H 0.053 0.947 21 N -0.842 5.842 22 C -0.102 4.102 23 H 0.026 0.974 24 H 0.014 0.986 25 H 0.090 0.910 26 H 0.263 0.737 27 H 0.389 0.611 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.338 0.662 31 H 0.340 0.660 32 H 0.081 0.919 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -3.490 11.834 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.353 5.353 13 C 0.297 3.703 14 O -0.435 6.435 15 C -0.113 4.113 16 H 0.117 0.883 17 C -0.166 4.166 18 C -0.167 4.167 19 C -0.004 4.004 20 H 0.070 0.930 21 N -0.371 5.371 22 C -0.141 4.141 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.221 0.779 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.100 0.900 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.926 -3.265 11.809 13.206 hybrid contribution 0.676 -0.014 -1.341 1.501 sum 5.602 -3.279 10.469 12.318 Atomic orbital electron populations 1.22075 0.98500 0.99092 1.00867 1.18742 0.91010 0.93969 0.80156 0.93502 1.21259 1.32274 1.13145 0.90332 0.92050 1.24896 0.94836 0.94962 0.99073 1.69914 1.35979 1.22538 1.23735 0.86397 0.78608 0.79522 0.82586 1.19740 1.20861 1.20898 1.46488 1.64790 1.13528 1.10446 1.20166 0.78168 0.87334 0.84629 1.90619 1.51826 1.16146 1.84922 1.21160 0.96516 0.98857 0.94808 0.88324 1.23011 0.93508 0.99533 1.00568 1.23133 0.98985 0.95959 0.98656 1.21230 0.94003 0.96412 0.88710 0.92977 1.58866 1.07245 1.53826 1.17204 1.22458 0.95264 0.99493 0.96840 0.95475 0.96683 0.89182 0.92652 0.77928 0.85121 0.85792 0.84999 0.84737 0.90017 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.79 2.56 -69.08 -0.18 6.62 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.10 11.32 55.43 0.63 -24.48 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.71 -14.93 5.00 -54.93 -0.27 -15.21 16 13 C 0.51 10.39 7.15 -10.99 -0.08 10.31 16 14 O -0.56 -13.38 15.12 5.56 0.08 -13.30 16 15 C -0.09 -1.39 3.30 -91.78 -0.30 -1.70 16 16 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 17 C -0.15 -2.03 9.97 -35.70 -0.36 -2.38 16 18 C -0.15 -1.99 10.39 -35.70 -0.37 -2.36 16 19 C 0.11 1.45 4.02 -67.81 -0.27 1.18 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 N -0.84 -9.09 9.26 -4.75 -0.04 -9.13 16 22 C -0.10 -1.46 6.23 -24.92 -0.16 -1.62 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.39 7.14 8.50 -40.82 -0.35 6.80 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.34 3.08 9.06 -39.29 -0.36 2.73 16 31 H 0.34 3.20 9.05 -39.29 -0.36 2.84 16 32 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 33 H 0.09 1.42 6.92 -51.94 -0.36 1.06 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -30.79 278.46 -6.82 -37.61 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.62 Total: 10.75 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.76 Total: -6.14 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.31 Total: -48.82 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.79 -6.82 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227263235.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.724 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds