Wall clock time and date at job start Mon Mar 30 2020 03:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47109 * 2 1 4 4 C 1.50702 * 109.47226 * 240.00084 * 2 1 3 5 5 H 1.08004 * 120.00011 * 245.46225 * 4 2 1 6 6 C 1.37879 * 119.99926 * 65.45835 * 4 2 1 7 7 N 1.31514 * 120.00085 * 9.56137 * 6 4 2 8 8 Si 1.86802 * 119.99738 * 189.56467 * 6 4 2 9 9 H 1.48500 * 109.47374 * 84.99258 * 8 6 4 10 10 H 1.48500 * 109.46951 * 204.99216 * 8 6 4 11 11 H 1.48500 * 109.47022 * 324.99108 * 8 6 4 12 12 N 1.46504 * 109.47369 * 119.99971 * 2 1 3 13 13 C 1.34774 * 119.99815 * 274.99973 * 12 2 1 14 14 O 1.21284 * 120.00362 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99880 * 179.97438 * 13 12 2 16 16 H 1.08993 * 110.34122 * 57.71309 * 15 13 12 17 17 C 1.51099 * 110.47992 * 295.35990 * 15 13 12 18 18 C 1.30527 * 111.10166 * 224.69834 * 17 15 13 19 19 C 1.51172 * 111.12236 * 0.03762 * 18 17 15 20 20 H 1.08993 * 110.37942 * 257.59054 * 19 18 17 21 21 N 1.46901 * 110.42745 * 135.19095 * 19 18 17 22 22 C 1.54634 * 110.38536 * 180.02562 * 15 13 12 23 23 H 1.09000 * 109.47417 * 63.67591 * 1 2 3 24 24 H 1.09002 * 109.47396 * 183.68296 * 1 2 3 25 25 H 1.09003 * 109.46947 * 303.68113 * 1 2 3 26 26 H 0.96994 * 119.99806 * 180.02562 * 7 6 4 27 27 H 0.96995 * 119.99700 * 94.99886 * 12 2 1 28 28 H 1.07993 * 124.45338 * 44.68426 * 17 15 13 29 29 H 1.07993 * 124.44938 * 179.97438 * 18 17 15 30 30 H 1.00897 * 110.99887 * 64.71367 * 21 19 18 31 31 H 1.00894 * 111.00072 * 188.67313 * 21 19 18 32 32 H 1.09003 * 111.03386 * 261.58829 * 22 15 13 33 33 H 1.08994 * 111.03912 * 25.48246 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7945 -0.1773 -2.4796 7 7 1.2992 1.0356 -2.5936 8 14 2.1758 -1.1781 -4.0102 9 1 1.0238 -2.0611 -4.3240 10 1 2.4225 -0.2615 -5.1522 11 1 3.3843 -2.0074 -3.7710 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1587 2.4115 15 6 2.6490 -0.7288 3.5877 16 1 3.6314 -1.1621 3.4009 17 6 1.6732 -1.8007 4.0141 18 6 1.4781 -1.7723 5.3045 19 6 2.2908 -0.6757 5.9542 20 1 3.1712 -1.0940 6.4421 21 7 1.4711 0.0648 6.9225 22 6 2.7089 0.2467 4.7861 23 1 -0.3634 0.4557 -0.9211 24 1 -0.3634 -1.0255 0.0660 25 1 -0.3633 0.5699 0.8552 26 1 1.1316 1.4104 -3.4723 27 1 2.2490 -1.6317 1.1526 28 1 1.1992 -2.4986 3.3399 29 1 0.8215 -2.4435 5.8379 30 1 1.1925 -0.5289 7.6893 31 1 1.9574 0.8831 7.2570 32 1 3.7202 0.6268 4.9309 33 1 2.0000 1.0650 4.6604 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227263248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:10 Heat of formation + Delta-G solvation = -27.087736 kcal Electronic energy + Delta-G solvation = -15307.651426 eV Core-core repulsion = 12754.104653 eV Total energy + Delta-G solvation = -2553.546773 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.72279 -37.56735 -34.69882 -32.94345 -32.20190 -29.44288 -28.67075 -26.12610 -25.17075 -21.93334 -20.33352 -19.50510 -18.74755 -17.17058 -16.18025 -15.79346 -15.30339 -15.19522 -14.81356 -14.02515 -13.81481 -12.89176 -12.40703 -12.31989 -11.94955 -11.73779 -11.49570 -11.20734 -11.08812 -10.95961 -10.91285 -10.70777 -10.32330 -10.24473 -9.47639 -9.08050 -8.86334 -8.54158 -8.47101 -7.86551 -6.11954 -4.17370 2.23983 3.26491 3.33026 3.34414 3.49656 4.13180 4.39467 4.57348 4.64090 4.80139 5.15434 5.21655 5.27268 5.45475 5.57228 5.79650 5.92426 6.10143 6.41710 6.45215 6.80152 6.86084 6.94959 7.08092 7.12910 7.34322 7.48912 7.60350 7.71054 7.89392 8.10392 8.73725 8.83242 9.20235 9.48959 10.96615 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059600 B = 0.005797 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.683475 B = 4828.845229 C = 4976.897970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.511 3.489 14 O -0.552 6.552 15 C -0.091 4.091 16 H 0.103 0.897 17 C -0.140 4.140 18 C -0.156 4.156 19 C 0.109 3.891 20 H 0.045 0.955 21 N -0.840 5.840 22 C -0.104 4.104 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.019 0.981 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.338 0.662 31 H 0.342 0.658 32 H 0.070 0.930 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.524 -6.342 14.289 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.355 5.355 13 C 0.295 3.705 14 O -0.431 6.431 15 C -0.113 4.113 16 H 0.121 0.879 17 C -0.159 4.159 18 C -0.175 4.175 19 C -0.002 4.002 20 H 0.063 0.937 21 N -0.370 5.370 22 C -0.142 4.142 23 H 0.090 0.910 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.089 0.911 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.751 -5.232 13.543 14.623 hybrid contribution 1.002 -1.320 -0.294 1.683 sum 2.753 -6.553 13.248 15.034 Atomic orbital electron populations 1.22003 0.98911 0.98540 1.00472 1.18742 0.90551 0.94550 0.80181 0.92762 1.21178 1.37134 1.08623 0.90495 0.92123 1.24894 0.95006 0.94619 0.99029 1.69987 1.43867 1.13751 1.24186 0.86527 0.78695 0.79948 0.82308 1.20438 1.21180 1.19927 1.46480 1.65107 1.13445 1.10498 1.20192 0.78521 0.87339 0.84455 1.90639 1.51353 1.16184 1.84904 1.21203 0.99488 0.95555 0.95064 0.87929 1.23063 0.98062 0.98352 0.96398 1.23088 0.99856 0.98739 0.95782 1.21239 0.93055 0.92614 0.93271 0.93709 1.58750 1.47103 1.11265 1.19883 1.22519 1.02435 0.98234 0.91037 0.90973 0.95320 0.96139 0.92573 0.78025 0.85111 0.85765 0.85020 0.84534 0.91130 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.36 37.16 0.35 -3.18 16 2 C 0.26 6.79 2.42 -69.08 -0.17 6.62 16 3 H 0.05 1.64 7.52 -51.93 -0.39 1.25 16 4 C -0.54 -14.38 8.66 -34.44 -0.30 -14.68 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 7 N -0.88 -25.39 12.16 55.43 0.67 -24.71 16 8 Si 0.90 20.78 29.55 -169.99 -5.02 15.75 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.71 -15.02 5.04 -54.93 -0.28 -15.30 16 13 C 0.51 10.49 7.13 -10.98 -0.08 10.41 16 14 O -0.55 -13.67 15.14 5.55 0.08 -13.59 16 15 C -0.09 -1.39 3.29 -91.87 -0.30 -1.69 16 16 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 17 C -0.14 -1.88 10.06 -35.70 -0.36 -2.24 16 18 C -0.16 -1.89 10.41 -35.66 -0.37 -2.26 16 19 C 0.11 1.26 4.03 -67.79 -0.27 0.99 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 N -0.84 -8.89 9.27 -4.74 -0.04 -8.93 16 22 C -0.10 -1.48 6.13 -25.03 -0.15 -1.64 16 23 H 0.07 1.94 6.83 -51.93 -0.35 1.59 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.39 7.08 8.53 -40.82 -0.35 6.73 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.34 2.81 9.07 -39.29 -0.36 2.45 16 31 H 0.34 3.11 9.02 -39.29 -0.35 2.76 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.78 6.95 -51.93 -0.36 1.41 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -31.67 279.93 -6.78 -38.45 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.67 Total: 10.00 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.75 Total: -5.89 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.35 Total: -48.95 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.67 -6.78 -38.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227263248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.359 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds