Wall clock time and date at job start Mon Mar 30 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47109 * 2 1 4 4 C 1.50702 * 109.47226 * 240.00084 * 2 1 3 5 5 H 1.08004 * 120.00011 * 245.46225 * 4 2 1 6 6 C 1.37879 * 119.99926 * 65.45835 * 4 2 1 7 7 N 1.31514 * 120.00085 * 9.56137 * 6 4 2 8 8 Si 1.86802 * 119.99738 * 189.56467 * 6 4 2 9 9 H 1.48500 * 109.47374 * 84.99258 * 8 6 4 10 10 H 1.48500 * 109.46951 * 204.99216 * 8 6 4 11 11 H 1.48500 * 109.47022 * 324.99108 * 8 6 4 12 12 N 1.46504 * 109.47369 * 119.99971 * 2 1 3 13 13 C 1.34774 * 119.99815 * 274.99973 * 12 2 1 14 14 O 1.21284 * 120.00362 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99880 * 179.97438 * 13 12 2 16 16 H 1.08993 * 110.34122 * 57.71309 * 15 13 12 17 17 C 1.51099 * 110.47992 * 295.35990 * 15 13 12 18 18 C 1.30527 * 111.10166 * 224.69834 * 17 15 13 19 19 C 1.51172 * 111.12236 * 0.03762 * 18 17 15 20 20 H 1.08993 * 110.37942 * 257.59054 * 19 18 17 21 21 N 1.46901 * 110.42745 * 135.19095 * 19 18 17 22 22 C 1.54634 * 110.38536 * 180.02562 * 15 13 12 23 23 H 1.09000 * 109.47417 * 63.67591 * 1 2 3 24 24 H 1.09002 * 109.47396 * 183.68296 * 1 2 3 25 25 H 1.09003 * 109.46947 * 303.68113 * 1 2 3 26 26 H 0.96994 * 119.99806 * 180.02562 * 7 6 4 27 27 H 0.96995 * 119.99700 * 94.99886 * 12 2 1 28 28 H 1.07993 * 124.45338 * 44.68426 * 17 15 13 29 29 H 1.07993 * 124.44938 * 179.97438 * 18 17 15 30 30 H 1.00897 * 110.99887 * 64.71367 * 21 19 18 31 31 H 1.00894 * 111.00072 * 188.67313 * 21 19 18 32 32 H 1.09003 * 111.03386 * 261.58829 * 22 15 13 33 33 H 1.08994 * 111.03912 * 25.48246 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7945 -0.1773 -2.4796 7 7 1.2992 1.0356 -2.5936 8 14 2.1758 -1.1781 -4.0102 9 1 1.0238 -2.0611 -4.3240 10 1 2.4225 -0.2615 -5.1522 11 1 3.3843 -2.0074 -3.7710 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1587 2.4115 15 6 2.6490 -0.7288 3.5877 16 1 3.6314 -1.1621 3.4009 17 6 1.6732 -1.8007 4.0141 18 6 1.4781 -1.7723 5.3045 19 6 2.2908 -0.6757 5.9542 20 1 3.1712 -1.0940 6.4421 21 7 1.4711 0.0648 6.9225 22 6 2.7089 0.2467 4.7861 23 1 -0.3634 0.4557 -0.9211 24 1 -0.3634 -1.0255 0.0660 25 1 -0.3633 0.5699 0.8552 26 1 1.1316 1.4104 -3.4723 27 1 2.2490 -1.6317 1.1526 28 1 1.1992 -2.4986 3.3399 29 1 0.8215 -2.4435 5.8379 30 1 1.1925 -0.5289 7.6893 31 1 1.9574 0.8831 7.2570 32 1 3.7202 0.6268 4.9309 33 1 2.0000 1.0650 4.6604 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227263248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:09 Heat of formation + Delta-G solvation = -51.352094 kcal Electronic energy + Delta-G solvation = -15308.703607 eV Core-core repulsion = 12754.104653 eV Total energy + Delta-G solvation = -2554.598955 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.13686 -38.93737 -36.64531 -34.38516 -33.72353 -31.15548 -29.97186 -27.41112 -27.17135 -23.52628 -21.91040 -20.94943 -19.99873 -18.79700 -17.60058 -17.34243 -16.89107 -16.31617 -16.14955 -15.54560 -15.45954 -14.60239 -14.28558 -13.89235 -13.40692 -13.09165 -12.99671 -12.85596 -12.72120 -12.50988 -12.38016 -12.24171 -12.12367 -12.02364 -11.16448 -10.86847 -10.57278 -10.06223 -9.74331 -9.47421 -8.20332 -6.34272 1.23934 1.44947 1.46551 1.56187 1.89516 2.37095 2.67231 3.11808 3.55636 3.62182 3.78278 4.09694 4.25027 4.36176 4.50304 4.59135 4.72539 4.87188 4.92735 5.03114 5.06746 5.27305 5.41521 5.46606 5.61832 5.62053 5.89555 5.91099 6.03655 6.29186 6.67126 6.74582 6.99192 7.32713 7.58948 8.89141 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.059600 B = 0.005797 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.683475 B = 4828.845229 C = 4976.897970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.267 3.733 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.703 5.703 13 C 0.504 3.496 14 O -0.602 6.602 15 C -0.081 4.081 16 H 0.128 0.872 17 C -0.162 4.162 18 C -0.141 4.141 19 C 0.114 3.886 20 H 0.072 0.928 21 N -0.853 5.853 22 C -0.108 4.108 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.012 0.988 26 H 0.265 0.735 27 H 0.405 0.595 28 H 0.139 0.861 29 H 0.148 0.852 30 H 0.352 0.648 31 H 0.350 0.650 32 H 0.085 0.915 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -8.856 15.292 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.163 3.837 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.186 1.186 12 N -0.351 5.351 13 C 0.292 3.708 14 O -0.484 6.484 15 C -0.102 4.102 16 H 0.146 0.854 17 C -0.181 4.181 18 C -0.159 4.159 19 C 0.003 3.997 20 H 0.090 0.910 21 N -0.385 5.385 22 C -0.146 4.146 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.240 0.760 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.103 0.897 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.427 -7.794 14.584 16.713 hybrid contribution 0.793 -0.468 -0.524 1.059 sum 3.220 -8.262 14.059 16.622 Atomic orbital electron populations 1.21823 0.98519 0.99319 0.98865 1.18350 0.90845 0.92256 0.82235 0.98274 1.21515 1.37184 1.09010 0.90865 0.90693 1.25842 0.94726 0.95471 1.02504 1.70144 1.45119 1.15618 1.24965 0.85365 0.79034 0.78243 0.77741 1.19499 1.21398 1.18604 1.46247 1.65099 1.14151 1.09600 1.21218 0.77185 0.86892 0.85539 1.90616 1.53313 1.18663 1.85787 1.21215 1.01000 0.95860 0.92156 0.85438 1.23062 0.99031 0.98748 0.97276 1.23401 0.98790 0.98309 0.95426 1.21193 0.94095 0.91786 0.92627 0.91034 1.58683 1.47315 1.11954 1.20590 1.22525 1.02433 0.97580 0.92086 0.93290 0.93219 0.96870 0.92570 0.75998 0.84345 0.83429 0.83344 0.83663 0.89664 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 9.36 71.98 0.67 -5.83 16 2 C 0.27 14.21 2.42 44.24 0.11 14.32 16 3 H 0.00 -0.04 7.52 -2.39 -0.02 -0.06 16 4 C -0.55 -29.38 8.66 25.60 0.22 -29.16 16 5 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.81 5.17 84.66 0.44 1.24 16 7 N -0.92 -54.37 12.16 21.45 0.26 -54.10 16 8 Si 0.97 42.26 29.55 68.60 2.03 44.29 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 12 N -0.70 -29.89 5.04 -446.08 -2.25 -32.14 16 13 C 0.50 20.96 7.13 87.66 0.62 21.59 16 14 O -0.60 -31.11 15.14 -3.04 -0.05 -31.16 16 15 C -0.08 -2.34 3.29 -11.60 -0.04 -2.38 16 16 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 17 C -0.16 -3.98 10.06 26.26 0.26 -3.71 16 18 C -0.14 -2.96 10.41 26.28 0.27 -2.69 16 19 C 0.11 2.31 4.03 44.86 0.18 2.49 16 20 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 21 N -0.85 -16.02 9.27 -168.90 -1.57 -17.58 16 22 C -0.11 -2.95 6.13 31.70 0.19 -2.75 16 23 H 0.05 2.71 6.83 -2.39 -0.02 2.70 16 24 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.40 14.30 8.53 -92.71 -0.79 13.51 16 28 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.35 4.80 9.07 -89.70 -0.81 3.98 16 31 H 0.35 5.70 9.02 -89.70 -0.81 4.89 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.30 6.95 -2.39 -0.02 2.29 16 Total: -1.00 -70.59 279.93 0.09 -70.50 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -1.28 Total: 27.06 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 2.94 Total: -6.87 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.55 Total: -103.82 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.05 Total: -31.16 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -70.59 0.09 -70.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227263248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.149 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds