Wall clock time and date at job start Mon Mar 30 2020 02:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46908 * 109.47312 * 89.69230 * 7 6 5 9 9 C 1.46898 * 110.99933 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46772 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47000 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99570 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00189 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47042 * 89.99531 * 15 13 11 17 17 H 1.48495 * 109.47001 * 209.99682 * 15 13 11 18 18 H 1.48495 * 109.47013 * 329.99754 * 15 13 11 19 19 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 20 20 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 21 21 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 22 22 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 24 24 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 25 25 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 26 26 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 27 27 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 28 28 H 1.00897 * 110.99649 * 56.04199 * 8 7 6 29 29 H 1.09003 * 109.47128 * 299.99873 * 9 8 7 30 30 H 1.09000 * 109.46676 * 60.00170 * 9 8 7 31 31 H 1.08998 * 109.47341 * 300.00425 * 10 9 8 32 32 H 1.09007 * 109.46847 * 60.00133 * 10 9 8 33 33 H 0.97003 * 119.99411 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5723 4.4362 -1.8146 9 6 5.0109 5.5456 -2.6717 10 6 6.5118 5.4195 -2.9408 11 6 6.9617 6.5574 -3.8206 12 1 6.2485 7.2967 -4.1540 13 6 8.2839 6.6550 -4.1990 14 7 8.6764 7.6478 -4.9672 15 14 9.5175 5.3766 -3.6217 16 1 9.5761 4.2657 -4.6054 17 1 10.8588 6.0022 -3.5010 18 1 9.0982 4.8457 -2.2998 19 8 2.2982 2.1758 -1.0840 20 1 -0.3632 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8898 25 1 2.1912 1.8686 2.1113 26 1 2.5770 4.4844 -2.4705 27 1 2.9194 5.4648 -1.0249 28 1 4.8058 3.5459 -2.2282 29 1 4.4679 5.5117 -3.6162 30 1 4.8103 6.4928 -2.1709 31 1 7.0545 5.4536 -1.9962 32 1 6.7128 4.4723 -3.4414 33 1 9.6065 7.7163 -5.2336 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231649903.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:20 Heat of formation + Delta-G solvation = 8.976552 kcal Electronic energy + Delta-G solvation = -14550.920381 eV Core-core repulsion = 11998.937473 eV Total energy + Delta-G solvation = -2551.982908 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.34025 -36.40971 -34.71411 -34.48913 -32.95954 -30.86847 -28.82221 -26.16385 -23.92604 -23.22299 -22.02980 -20.90340 -20.40789 -17.03051 -16.87899 -16.59992 -15.70854 -15.14284 -14.78844 -14.35841 -14.00206 -13.61319 -13.37405 -12.88983 -12.70692 -12.65709 -12.32039 -11.98684 -11.56203 -11.39964 -11.29242 -11.02092 -10.44776 -10.12311 -9.95703 -9.82296 -9.25265 -8.75742 -8.54069 -8.11914 -6.04924 -4.03682 1.37522 2.56269 2.68936 3.32658 3.40439 3.46962 4.00416 4.46489 4.48856 4.64738 4.71058 4.82638 4.95330 5.12640 5.29249 5.29753 5.41544 5.47027 5.53009 5.73364 5.84033 5.99485 6.10169 6.15824 6.27125 6.70246 7.00146 7.31099 7.47426 7.62234 7.77524 7.82271 8.51334 8.98667 9.57280 11.08263 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053426 B = 0.004390 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.967908 B = 6375.914418 C = 6561.717043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.036 4.036 3 C -0.053 4.053 4 C -0.041 4.041 5 N -0.468 5.468 6 C 0.201 3.799 7 C 0.155 3.845 8 N -0.687 5.687 9 C 0.074 3.926 10 C -0.010 4.010 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.263 1.263 19 O -0.203 6.203 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.180 0.820 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.340 0.660 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.010 0.990 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.559 -15.102 9.522 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 C -0.107 4.107 4 C -0.180 4.180 5 N -0.197 5.197 6 C -0.006 4.006 7 C 0.025 3.975 8 N -0.320 5.320 9 C -0.053 4.053 10 C -0.048 4.048 11 C -0.561 4.561 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.542 5.542 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.187 1.187 19 O -0.090 6.090 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.114 0.886 25 H 0.198 0.802 26 H 0.075 0.925 27 H 0.131 0.869 28 H 0.157 0.843 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.047 -14.177 10.329 23.111 hybrid contribution 0.215 -1.464 -0.950 1.759 sum -14.833 -15.642 9.379 23.508 Atomic orbital electron populations 1.21804 0.93833 1.02423 1.02724 1.20028 0.96330 0.86685 1.04367 1.23430 1.06262 0.96198 0.84771 1.23084 1.04579 0.90134 1.00200 1.70461 1.17491 1.22371 1.09335 1.26347 0.98016 0.85810 0.90464 1.20307 0.90692 0.91197 0.95292 1.60629 1.11502 1.07553 1.52289 1.22035 0.98427 0.92111 0.92738 1.19556 0.90886 0.97108 0.97242 1.21041 0.95047 1.09968 1.30012 0.90974 1.24999 0.98366 0.95490 0.94520 1.69915 1.16974 1.31215 1.36085 0.86755 0.80573 0.81817 0.80059 1.20387 1.21370 1.18731 1.84390 1.64076 1.23803 1.36690 0.92090 0.92294 0.91449 0.89909 0.88586 0.80249 0.92535 0.86873 0.84310 0.95379 0.91032 0.95437 0.97200 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.59 16 2 C -0.04 -0.27 6.49 -27.88 -0.18 -0.45 16 3 C -0.05 -0.62 6.64 -35.69 -0.24 -0.86 16 4 C -0.04 -0.52 11.80 -17.77 -0.21 -0.73 16 5 N -0.47 -7.41 11.29 -11.10 -0.13 -7.54 16 6 C 0.20 3.04 7.86 -12.95 -0.10 2.94 16 7 C 0.16 2.24 6.31 -4.97 -0.03 2.21 16 8 N -0.69 -11.85 6.49 -115.05 -0.75 -12.60 16 9 C 0.07 1.47 5.62 -3.82 -0.02 1.44 16 10 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 11 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 15 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 18 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 19 O -0.20 -2.87 10.78 5.35 0.06 -2.81 16 20 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.34 5.63 8.72 -39.29 -0.34 5.28 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 32 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 285.91 15.07 4.31 4.31 Total: -1.00 -32.72 285.91 -6.29 -39.01 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.92 Total: -0.73 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.96 Total: -9.77 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.10 Total: -47.34 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.06 Total: -2.81 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.72 -6.29 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231649903.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.982 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds