Wall clock time and date at job start Mon Mar 30 2020 02:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46908 * 109.47312 * 89.69230 * 7 6 5 9 9 C 1.46898 * 110.99933 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46772 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47000 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99570 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00189 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47042 * 89.99531 * 15 13 11 17 17 H 1.48495 * 109.47001 * 209.99682 * 15 13 11 18 18 H 1.48495 * 109.47013 * 329.99754 * 15 13 11 19 19 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 20 20 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 21 21 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 22 22 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 24 24 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 25 25 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 26 26 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 27 27 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 28 28 H 1.00897 * 110.99649 * 56.04199 * 8 7 6 29 29 H 1.09003 * 109.47128 * 299.99873 * 9 8 7 30 30 H 1.09000 * 109.46676 * 60.00170 * 9 8 7 31 31 H 1.08998 * 109.47341 * 300.00425 * 10 9 8 32 32 H 1.09007 * 109.46847 * 60.00133 * 10 9 8 33 33 H 0.97003 * 119.99411 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5723 4.4362 -1.8146 9 6 5.0109 5.5456 -2.6717 10 6 6.5118 5.4195 -2.9408 11 6 6.9617 6.5574 -3.8206 12 1 6.2485 7.2967 -4.1540 13 6 8.2839 6.6550 -4.1990 14 7 8.6764 7.6478 -4.9672 15 14 9.5175 5.3766 -3.6217 16 1 9.5761 4.2657 -4.6054 17 1 10.8588 6.0022 -3.5010 18 1 9.0982 4.8457 -2.2998 19 8 2.2982 2.1758 -1.0840 20 1 -0.3632 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8898 25 1 2.1912 1.8686 2.1113 26 1 2.5770 4.4844 -2.4705 27 1 2.9194 5.4648 -1.0249 28 1 4.8058 3.5459 -2.2282 29 1 4.4679 5.5117 -3.6162 30 1 4.8103 6.4928 -2.1709 31 1 7.0545 5.4536 -1.9962 32 1 6.7128 4.4723 -3.4414 33 1 9.6065 7.7163 -5.2336 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231649903.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:20 Heat of formation + Delta-G solvation = -16.256616 kcal Electronic energy + Delta-G solvation = -14552.014573 eV Core-core repulsion = 11998.937473 eV Total energy + Delta-G solvation = -2553.077100 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.35392 -37.82935 -35.77315 -35.37505 -34.83852 -32.53562 -30.07960 -27.47672 -25.26169 -24.36030 -23.01935 -22.32169 -21.78832 -18.97772 -18.03602 -17.74813 -17.03981 -16.35961 -15.92668 -15.63422 -15.26518 -15.06449 -14.64048 -14.19254 -14.13519 -13.79181 -13.45298 -13.15285 -12.90233 -12.59062 -12.40225 -12.11170 -11.95046 -11.81560 -11.77433 -11.45545 -11.43327 -10.76830 -9.75061 -9.45981 -8.29872 -6.34213 0.37915 1.36318 1.39397 1.52168 1.58483 1.67985 2.36819 2.98851 3.05866 3.36562 3.73525 4.02721 4.06157 4.26891 4.30009 4.35250 4.48157 4.52722 4.59693 4.74487 4.93549 4.94207 4.99327 5.20755 5.23397 5.28315 5.32958 5.45578 5.62309 5.93381 6.20567 6.33750 6.73784 6.74747 7.30761 8.86600 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053426 B = 0.004390 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.967908 B = 6375.914418 C = 6561.717043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.036 4.036 3 C -0.044 4.044 4 C -0.060 4.060 5 N -0.496 5.496 6 C 0.181 3.819 7 C 0.159 3.841 8 N -0.693 5.693 9 C 0.088 3.912 10 C -0.006 4.006 11 C -0.532 4.532 12 H 0.037 0.963 13 C 0.006 3.994 14 N -0.950 5.950 15 Si 0.951 3.049 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.251 1.251 19 O -0.213 6.213 20 H 0.061 0.939 21 H 0.044 0.956 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.122 0.878 25 H 0.208 0.792 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.344 0.656 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.019 0.981 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.071 -17.685 10.675 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.097 4.097 4 C -0.198 4.198 5 N -0.226 5.226 6 C -0.025 4.025 7 C 0.030 3.970 8 N -0.326 5.326 9 C -0.040 4.040 10 C -0.044 4.044 11 C -0.571 4.571 12 H 0.056 0.944 13 C -0.191 4.191 14 N -0.590 5.590 15 Si 0.775 3.225 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.175 1.175 19 O -0.100 6.100 20 H 0.080 0.920 21 H 0.063 0.937 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.140 0.860 25 H 0.224 0.776 26 H 0.094 0.906 27 H 0.134 0.866 28 H 0.162 0.838 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.587 -16.775 11.485 25.618 hybrid contribution 0.266 -0.672 -1.286 1.475 sum -15.321 -17.448 10.199 25.361 Atomic orbital electron populations 1.21795 0.92867 1.03717 1.02102 1.20307 0.96999 0.84104 1.05935 1.24297 1.04245 0.97322 0.83876 1.23587 1.05016 0.89385 1.01850 1.70418 1.18085 1.24176 1.09891 1.26258 0.99472 0.86394 0.90425 1.20277 0.89031 0.91486 0.96222 1.60477 1.13755 1.06863 1.51458 1.21693 0.95819 0.92998 0.93473 1.19446 0.93663 0.95504 0.95778 1.21389 0.94724 1.10580 1.30402 0.94422 1.25966 1.00704 0.97776 0.94634 1.70059 1.17723 1.33474 1.37767 0.85636 0.77630 0.79082 0.80165 1.19012 1.20958 1.17491 1.84390 1.64105 1.23764 1.37710 0.92008 0.93651 0.89204 0.89328 0.85989 0.77571 0.90595 0.86613 0.83819 0.94920 0.91488 0.96093 0.96275 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 71.98 0.71 -0.76 16 2 C -0.04 -0.43 6.49 29.85 0.19 -0.24 16 3 C -0.04 -0.95 6.64 24.79 0.16 -0.78 16 4 C -0.06 -1.41 11.80 83.40 0.98 -0.43 16 5 N -0.50 -15.22 11.29 -303.82 -3.43 -18.66 16 6 C 0.18 5.30 7.86 88.34 0.69 6.00 16 7 C 0.16 4.43 6.31 85.55 0.54 4.97 16 8 N -0.69 -23.07 6.49 -517.91 -3.36 -26.43 16 9 C 0.09 3.43 5.62 86.30 0.49 3.91 16 10 C -0.01 -0.29 4.30 29.85 0.13 -0.16 16 11 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 12 H 0.04 2.37 7.99 -2.91 -0.02 2.34 16 13 C 0.01 0.37 5.47 84.65 0.46 0.83 16 14 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 15 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 19 O -0.21 -5.73 10.78 -3.76 -0.04 -5.77 16 20 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 21 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.34 10.89 8.72 -89.70 -0.78 10.10 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 32 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -70.63 285.91 0.22 -70.41 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.25 Total: 10.37 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.61 Total: -17.25 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -6.49 Total: -104.68 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.04 Total: -5.77 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -70.63 0.22 -70.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231649903.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.154 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds