Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47127 * 90.00516 * 5 4 3 7 7 C 1.46896 * 110.99972 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47099 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47122 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99749 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99587 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99621 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00297 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47103 * 90.00035 * 13 11 9 15 15 H 1.48506 * 109.47055 * 209.99813 * 13 11 9 16 16 H 1.48502 * 109.47415 * 330.00074 * 13 11 9 17 17 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 18 18 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 19 19 C 1.50706 * 126.43925 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 21 21 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 22 22 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 23 23 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 24 24 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 25 25 H 1.00904 * 110.99930 * 303.95262 * 6 5 4 26 26 H 1.08994 * 109.47327 * 299.99950 * 7 6 5 27 27 H 1.09001 * 109.46869 * 59.99969 * 7 6 5 28 28 H 1.09003 * 109.46958 * 300.00341 * 8 7 6 29 29 H 1.08997 * 109.47047 * 59.99866 * 8 7 6 30 30 H 0.96998 * 119.99735 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.46953 * 90.00182 * 19 18 2 32 32 H 1.09000 * 109.47318 * 209.99779 * 19 18 2 33 33 H 1.09000 * 109.47161 * 330.00410 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 7 5.1392 1.8951 1.3851 7 6 6.3135 2.7767 1.4239 8 6 6.6897 3.0613 2.8795 9 6 7.8941 3.9662 2.9193 10 1 8.3462 4.3042 1.9986 11 6 8.4192 4.3618 4.1312 12 7 9.4706 5.1511 4.1660 13 14 7.6376 3.7765 5.7236 14 1 8.2711 2.5018 6.1468 15 1 7.8365 4.8023 6.7789 16 1 6.1838 3.5603 5.5113 17 8 3.5735 -0.6445 0.0067 18 6 2.2998 -1.0844 -0.0005 19 6 1.8494 -2.5226 -0.0006 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 5.5731 1.1064 -0.5131 24 1 4.5040 2.5295 -0.5143 25 1 4.3695 2.2945 1.9010 26 1 7.1494 2.2909 0.9206 27 1 6.0807 3.7143 0.9192 28 1 5.8536 3.5472 3.3825 29 1 6.9223 2.1238 3.3846 30 1 9.8399 5.4297 5.0186 31 1 1.7405 -2.8691 -1.0283 32 1 2.5903 -3.1354 0.5128 33 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231656421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = 7.540846 kcal Electronic energy + Delta-G solvation = -14634.234707 eV Core-core repulsion = 12082.189542 eV Total energy + Delta-G solvation = -2552.045165 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.33146 -36.39125 -35.18952 -33.48752 -32.60802 -30.45275 -29.30566 -27.31354 -24.58770 -23.20169 -21.58607 -20.78393 -20.30209 -16.95785 -16.67742 -16.63765 -15.38391 -14.82414 -14.40867 -14.16706 -13.78584 -13.47085 -13.39760 -13.18399 -12.84733 -12.64081 -12.56509 -12.32854 -11.95430 -11.33348 -11.04353 -10.96814 -10.50519 -10.23392 -9.88455 -9.80287 -9.24808 -8.59417 -8.53813 -8.12257 -6.04841 -4.03579 1.39085 2.57204 2.66816 3.33580 3.40399 3.45605 3.92354 4.46404 4.60160 4.66846 4.74664 4.94018 5.14675 5.22371 5.29820 5.36246 5.39816 5.45564 5.56670 5.61946 5.95735 6.04004 6.09728 6.16809 6.30598 6.70955 7.00141 7.33664 7.46392 7.61702 7.76562 7.83087 8.51480 8.98727 9.57373 11.08366 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.004600 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.853112 B = 6085.317293 C = 6232.008543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.019 4.019 3 N -0.481 5.481 4 C 0.209 3.791 5 C 0.152 3.848 6 N -0.691 5.691 7 C 0.074 3.926 8 C -0.010 4.010 9 C -0.522 4.522 10 H 0.072 0.928 11 C 0.068 3.932 12 N -0.903 5.903 13 Si 0.882 3.118 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.265 1.265 17 O -0.192 6.192 18 C -0.058 4.058 19 C -0.065 4.065 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.073 0.927 25 H 0.344 0.656 26 H 0.070 0.930 27 H 0.029 0.971 28 H 0.015 0.985 29 H 0.022 0.978 30 H 0.263 0.737 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.874 -13.420 -9.026 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.139 4.139 3 N -0.212 5.212 4 C 0.001 3.999 5 C 0.022 3.978 6 N -0.324 5.324 7 C -0.053 4.053 8 C -0.048 4.048 9 C -0.561 4.561 10 H 0.090 0.910 11 C -0.133 4.133 12 N -0.542 5.542 13 Si 0.709 3.291 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.190 1.190 17 O -0.078 6.078 18 C -0.112 4.112 19 C -0.122 4.122 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.118 0.882 24 H 0.091 0.909 25 H 0.162 0.838 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.512 -13.295 -8.844 22.970 hybrid contribution -0.422 -0.048 0.676 0.798 sum -16.934 -13.343 -8.168 23.055 Atomic orbital electron populations 1.20082 0.86700 1.03070 1.02739 1.21505 0.97846 0.87834 1.06681 1.70356 1.00609 1.31395 1.18828 1.26230 0.95129 0.79062 0.99442 1.20282 0.89690 0.94388 0.93442 1.60642 1.10099 1.51717 1.09931 1.22025 0.90121 0.92534 1.00646 1.19556 0.96950 0.96919 0.91387 1.21040 1.11658 1.28868 0.94493 0.90972 1.24996 0.94608 0.94565 0.99180 1.69915 1.22946 1.35239 1.26090 0.86741 0.80556 0.78544 0.83211 1.20216 1.21447 1.18998 1.84414 1.29772 1.24184 1.69434 1.23169 0.81130 0.98181 1.08684 1.20228 1.01867 0.86617 1.03453 0.90829 0.90680 0.90943 0.88235 0.90880 0.83835 0.91182 0.95245 0.96681 0.95974 0.92687 0.90061 0.90285 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.05 36.00 0.36 -0.26 16 2 C -0.02 -0.25 7.11 -82.81 -0.59 -0.83 16 3 N -0.48 -7.60 11.29 -7.36 -0.08 -7.69 16 4 C 0.21 3.24 7.86 -12.94 -0.10 3.13 16 5 C 0.15 2.23 6.31 -4.97 -0.03 2.19 16 6 N -0.69 -12.06 6.49 -115.06 -0.75 -12.81 16 7 C 0.07 1.47 5.62 -3.82 -0.02 1.45 16 8 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 9 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 10 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 13 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 16 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 17 O -0.19 -2.91 10.78 5.36 0.06 -2.85 16 18 C -0.06 -0.73 7.39 -35.68 -0.26 -0.99 16 19 C -0.06 -0.49 10.04 36.01 0.36 -0.13 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 23 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.34 5.99 8.72 -39.29 -0.34 5.65 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 29 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.49 7.80 -51.93 -0.40 0.09 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -32.94 285.06 -6.09 -39.04 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.89 Total: -1.00 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.83 Total: -9.18 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.06 Total: -47.71 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.06 Total: -2.85 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.94 -6.09 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231656421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.577 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds