Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47127 * 90.00516 * 5 4 3 7 7 C 1.46896 * 110.99972 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47099 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47122 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99749 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99587 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99621 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00297 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47103 * 90.00035 * 13 11 9 15 15 H 1.48506 * 109.47055 * 209.99813 * 13 11 9 16 16 H 1.48502 * 109.47415 * 330.00074 * 13 11 9 17 17 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 18 18 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 19 19 C 1.50706 * 126.43925 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 21 21 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 22 22 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 23 23 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 24 24 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 25 25 H 1.00904 * 110.99930 * 303.95262 * 6 5 4 26 26 H 1.08994 * 109.47327 * 299.99950 * 7 6 5 27 27 H 1.09001 * 109.46869 * 59.99969 * 7 6 5 28 28 H 1.09003 * 109.46958 * 300.00341 * 8 7 6 29 29 H 1.08997 * 109.47047 * 59.99866 * 8 7 6 30 30 H 0.96998 * 119.99735 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.46953 * 90.00182 * 19 18 2 32 32 H 1.09000 * 109.47318 * 209.99779 * 19 18 2 33 33 H 1.09000 * 109.47161 * 330.00410 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 7 5.1392 1.8951 1.3851 7 6 6.3135 2.7767 1.4239 8 6 6.6897 3.0613 2.8795 9 6 7.8941 3.9662 2.9193 10 1 8.3462 4.3042 1.9986 11 6 8.4192 4.3618 4.1312 12 7 9.4706 5.1511 4.1660 13 14 7.6376 3.7765 5.7236 14 1 8.2711 2.5018 6.1468 15 1 7.8365 4.8023 6.7789 16 1 6.1838 3.5603 5.5113 17 8 3.5735 -0.6445 0.0067 18 6 2.2998 -1.0844 -0.0005 19 6 1.8494 -2.5226 -0.0006 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 5.5731 1.1064 -0.5131 24 1 4.5040 2.5295 -0.5143 25 1 4.3695 2.2945 1.9010 26 1 7.1494 2.2909 0.9206 27 1 6.0807 3.7143 0.9192 28 1 5.8536 3.5472 3.3825 29 1 6.9223 2.1238 3.3846 30 1 9.8399 5.4297 5.0186 31 1 1.7405 -2.8691 -1.0283 32 1 2.5903 -3.1354 0.5128 33 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231656421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = -18.197821 kcal Electronic energy + Delta-G solvation = -14635.350819 eV Core-core repulsion = 12082.189542 eV Total energy + Delta-G solvation = -2553.161277 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.36359 -37.83969 -36.20447 -35.19393 -34.00267 -32.14177 -30.06076 -28.70049 -25.94912 -24.60257 -22.67244 -22.37090 -21.56908 -18.98243 -17.89002 -17.77149 -16.67953 -16.39540 -15.89588 -15.30819 -15.12154 -14.76852 -14.46025 -14.18193 -14.15314 -13.79909 -13.58310 -13.17432 -13.16840 -12.91864 -12.84346 -12.06054 -12.05117 -11.82278 -11.68890 -11.55487 -11.42900 -10.77505 -9.64010 -9.42531 -8.30346 -6.34747 0.37182 1.37183 1.37931 1.50559 1.53805 1.69248 2.36138 2.90209 3.05365 3.36609 3.76665 3.87887 4.13000 4.27424 4.38017 4.48192 4.51659 4.62433 4.65517 4.76920 4.82853 4.93148 4.98001 5.10454 5.16010 5.22424 5.43273 5.45193 5.60219 5.91956 6.17815 6.31060 6.71960 6.73248 7.30236 8.86126 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.004600 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.853112 B = 6085.317293 C = 6232.008543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.043 4.043 3 N -0.503 5.503 4 C 0.186 3.814 5 C 0.157 3.843 6 N -0.693 5.693 7 C 0.088 3.912 8 C -0.006 4.006 9 C -0.533 4.533 10 H 0.038 0.962 11 C 0.007 3.993 12 N -0.949 5.949 13 Si 0.952 3.048 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.251 1.251 17 O -0.208 6.208 18 C -0.057 4.057 19 C -0.065 4.065 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.102 0.898 23 H 0.112 0.888 24 H 0.083 0.917 25 H 0.344 0.656 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.018 0.982 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.055 -15.351 -8.732 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.162 4.162 3 N -0.234 5.234 4 C -0.021 4.021 5 C 0.027 3.973 6 N -0.326 5.326 7 C -0.040 4.040 8 C -0.044 4.044 9 C -0.571 4.571 10 H 0.056 0.944 11 C -0.190 4.190 12 N -0.590 5.590 13 Si 0.775 3.225 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.174 1.174 17 O -0.095 6.095 18 C -0.110 4.110 19 C -0.121 4.121 20 H 0.100 0.900 21 H 0.089 0.911 22 H 0.121 0.879 23 H 0.130 0.870 24 H 0.101 0.899 25 H 0.162 0.838 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.707 -15.242 -8.571 25.608 hybrid contribution 0.230 0.522 0.488 0.751 sum -18.477 -14.720 -8.083 24.969 Atomic orbital electron populations 1.20222 0.84014 1.04392 1.03662 1.22198 0.99635 0.87344 1.07062 1.70332 1.01167 1.32953 1.18960 1.26189 0.95221 0.79444 1.01212 1.20272 0.90224 0.95008 0.91778 1.60516 1.09414 1.50682 1.11976 1.21700 0.91308 0.93190 0.97831 1.19448 0.95024 0.95652 0.94286 1.21379 1.13004 1.29372 0.93368 0.94403 1.25952 0.95114 0.94672 1.03232 1.70057 1.24730 1.36882 1.27298 0.85639 0.80258 0.78265 0.78325 1.19272 1.20853 1.17426 1.84405 1.31388 1.24074 1.69642 1.24145 0.80042 1.00221 1.06602 1.20511 1.02941 0.83444 1.05199 0.89993 0.91112 0.87913 0.87009 0.89909 0.83846 0.91167 0.95167 0.96379 0.96044 0.92401 0.87972 0.89940 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.05 71.24 0.72 -0.31 16 2 C -0.04 -1.05 7.11 41.26 0.29 -0.76 16 3 N -0.50 -15.47 11.29 -291.98 -3.30 -18.77 16 4 C 0.19 5.63 7.86 88.34 0.69 6.33 16 5 C 0.16 4.46 6.31 85.56 0.54 5.00 16 6 N -0.69 -23.54 6.49 -517.92 -3.36 -26.90 16 7 C 0.09 3.45 5.62 86.31 0.49 3.93 16 8 C -0.01 -0.30 4.30 29.85 0.13 -0.17 16 9 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 10 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 11 C 0.01 0.44 5.47 84.65 0.46 0.90 16 12 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 13 Si 0.95 45.19 27.47 68.60 1.88 47.08 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 17 O -0.21 -6.10 10.78 -3.72 -0.04 -6.14 16 18 C -0.06 -1.32 7.39 24.79 0.18 -1.13 16 19 C -0.06 -0.76 10.04 71.24 0.72 -0.05 16 20 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.10 0.93 7.79 -2.38 -0.02 0.91 16 23 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.34 11.65 8.72 -89.69 -0.78 10.87 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 29 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 30 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 0.79 7.80 -2.39 -0.02 0.77 16 Total: -1.00 -71.50 285.06 0.21 -71.29 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.26 Total: 10.00 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 4.47 Total: -16.95 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -6.36 Total: -105.26 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.04 Total: -6.14 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -71.50 0.21 -71.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231656421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.090 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds