Wall clock time and date at job start Mon Mar 30 2020 02:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 C 1.53007 * 109.47145 * 240.00583 * 2 1 3 5 5 C 1.52997 * 109.47736 * 120.00640 * 2 1 3 6 6 C 1.50697 * 109.47055 * 59.99642 * 5 2 1 7 7 N 1.29949 * 126.29094 * 90.02989 * 6 5 2 8 8 O 1.21299 * 110.25253 * 180.02562 * 7 6 5 9 9 C 1.33638 * 109.81146 * 359.97438 * 8 7 6 10 10 C 1.50697 * 126.54638 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47266 * 270.02308 * 10 9 8 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 N 1.31126 * 106.90184 * 0.22991 * 9 8 7 20 20 H 1.08995 * 109.46618 * 299.99637 * 1 2 3 21 21 H 1.08997 * 109.47371 * 59.99389 * 1 2 3 22 22 H 1.08998 * 109.46856 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47316 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47457 * 300.00558 * 3 2 1 25 25 H 1.08996 * 109.46565 * 60.00378 * 3 2 1 26 26 H 1.09005 * 109.46968 * 300.00211 * 4 2 1 27 27 H 1.09006 * 109.47052 * 59.99725 * 4 2 1 28 28 H 1.08995 * 109.47496 * 179.97438 * 4 2 1 29 29 H 1.09004 * 109.46622 * 300.00132 * 5 2 1 30 30 H 1.08998 * 109.47604 * 180.02562 * 5 2 1 31 31 H 1.09004 * 109.47205 * 150.02402 * 10 9 8 32 32 H 1.08997 * 109.47395 * 30.02894 * 10 9 8 33 33 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0402 -0.7213 1.2491 6 6 1.5378 -2.1421 1.2490 7 7 2.1368 -3.1697 0.7256 8 8 1.4743 -4.1720 0.8925 9 6 0.3561 -3.8699 1.5590 10 6 -0.7330 -4.8288 1.9657 11 6 -1.7649 -4.9109 0.8704 12 1 -1.6439 -4.3274 -0.0303 13 6 -2.8634 -5.7310 1.0182 14 7 -3.0079 -6.4458 2.1127 15 14 -4.1420 -5.8333 -0.3397 16 1 -3.7724 -6.9153 -1.2872 17 1 -5.4714 -6.1273 0.2532 18 1 -4.1988 -4.5384 -1.0647 19 7 0.3849 -2.5789 1.7866 20 1 -0.3632 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6767 1.9562 0.8900 26 1 1.6767 -1.7488 -1.2495 27 1 1.6766 -0.2072 -2.1393 28 1 3.1300 -0.7208 -1.2497 29 1 1.6768 -0.2076 2.1391 30 1 3.1301 -0.7209 1.2493 31 1 -1.2042 -4.4757 2.8830 32 1 -0.3033 -5.8162 2.1348 33 1 -3.7809 -7.0224 2.2168 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232491922.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:06 Heat of formation + Delta-G solvation = 18.584503 kcal Electronic energy + Delta-G solvation = -15506.782851 eV Core-core repulsion = 12955.216575 eV Total energy + Delta-G solvation = -2551.566276 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.36547 -39.00044 -36.50309 -35.57301 -33.69551 -30.47155 -29.09562 -28.22074 -28.13019 -25.97685 -24.24847 -22.36796 -19.87304 -19.19881 -18.38154 -18.04218 -16.76164 -15.85586 -15.71707 -15.58452 -15.06996 -14.46942 -14.34538 -13.87693 -13.60667 -13.18298 -13.00493 -12.83308 -12.71224 -12.65798 -12.58459 -12.54232 -12.15382 -11.95719 -11.84319 -11.75227 -11.63818 -11.49483 -10.68225 -10.58678 -8.31930 -6.45075 0.30853 1.38409 1.42371 1.44685 1.54410 2.07622 2.38739 2.86199 3.03315 3.24961 3.75854 3.84402 3.95616 4.32545 4.46131 4.57006 4.65094 4.76220 4.83075 4.87520 4.93179 4.99638 5.02377 5.07391 5.09620 5.19144 5.27037 5.28203 5.38950 5.48972 5.57884 5.87710 6.59108 7.23544 7.32488 8.79028 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.007053 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.349820 B = 3968.859505 C = 4367.027555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.139 4.139 5 C -0.018 4.018 6 C 0.177 3.823 7 N -0.415 5.415 8 O 0.042 5.958 9 C 0.224 3.776 10 C 0.110 3.890 11 C -0.542 4.542 12 H 0.050 0.950 13 C 0.022 3.978 14 N -0.916 5.916 15 Si 0.969 3.031 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.272 1.272 19 N -0.515 5.515 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.020 0.980 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 12.511 -3.548 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.187 4.187 4 C -0.197 4.197 5 C -0.057 4.057 6 C -0.096 4.096 7 N -0.131 5.131 8 O -0.007 6.007 9 C 0.005 3.995 10 C 0.071 3.929 11 C -0.581 4.581 12 H 0.069 0.931 13 C -0.178 4.178 14 N -0.554 5.554 15 Si 0.793 3.207 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.197 1.197 19 N -0.250 5.250 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.555 12.773 -3.694 15.811 hybrid contribution -0.934 -0.803 -0.394 1.293 sum 7.621 11.971 -4.088 14.768 Atomic orbital electron populations 1.21869 0.95037 1.00456 1.02322 1.20546 0.95372 0.97059 0.93228 1.21776 1.01736 0.92091 1.03063 1.21886 1.01543 0.98666 0.97577 1.20348 1.01664 0.82842 1.00844 1.26414 0.88731 0.99675 0.94779 1.74495 1.19911 0.94623 1.24118 1.85227 1.27509 1.31319 1.56690 1.29697 0.88602 0.92710 0.88454 1.17868 0.86410 0.90781 0.97829 1.20991 1.06931 1.27413 1.02724 0.93119 1.25725 0.99605 0.94165 0.98345 1.70007 1.30577 1.27213 1.27593 0.85389 0.77966 0.78705 0.78689 1.19359 1.19811 1.19678 1.71968 1.19664 1.07718 1.25612 0.91819 0.91623 0.96038 0.91079 0.91374 0.91362 0.96186 0.91367 0.91361 0.87758 0.87595 0.92766 0.93143 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.20 71.98 0.59 -3.34 16 2 C -0.06 -1.45 0.80 -52.18 -0.04 -1.49 16 3 C -0.13 -2.08 8.47 71.98 0.61 -1.47 16 4 C -0.14 -3.58 8.20 71.98 0.59 -2.99 16 5 C -0.02 -0.49 4.91 29.85 0.15 -0.34 16 6 C 0.18 6.66 5.52 138.46 0.76 7.43 16 7 N -0.42 -16.90 11.39 -60.31 -0.69 -17.59 16 8 O 0.04 1.89 11.31 74.89 0.85 2.73 16 9 C 0.22 10.47 7.70 88.38 0.68 11.15 16 10 C 0.11 5.62 5.60 29.10 0.16 5.78 16 11 C -0.54 -29.89 9.09 25.60 0.23 -29.66 16 12 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 13 C 0.02 1.21 5.46 84.66 0.46 1.68 16 14 N -0.92 -51.45 13.29 21.45 0.28 -51.16 16 15 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 N -0.51 -22.58 10.79 -303.20 -3.27 -25.85 16 20 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.02 0.77 6.66 -2.39 -0.02 0.75 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.02 0.64 6.67 -2.38 -0.02 0.63 16 27 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 30 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 2.88 8.14 -2.38 -0.02 2.86 16 32 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -60.49 280.52 4.48 -56.01 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.08 Total: 4.47 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.20 Total: -13.25 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -3.67 Total: -94.60 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.85 Total: 2.73 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -60.49 4.48 -56.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232491922.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.593 kcal (2) G-P(sol) polarization free energy of solvation -60.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds