Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46827 * 2 1 4 4 C 1.52999 * 109.46793 * 119.99873 * 2 1 3 5 5 C 1.53004 * 109.47003 * 65.00188 * 4 2 1 6 6 C 1.50697 * 109.47057 * 179.97438 * 5 4 2 7 7 N 1.29949 * 126.29094 * 89.97757 * 6 5 4 8 8 O 1.21299 * 110.25253 * 180.02562 * 7 6 5 9 9 C 1.33638 * 109.81146 * 359.97438 * 8 7 6 10 10 C 1.50697 * 126.54638 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47266 * 270.02308 * 10 9 8 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47163 * 59.99902 * 15 13 11 17 17 H 1.48495 * 109.47159 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47290 * 299.99897 * 15 13 11 19 19 N 1.31126 * 106.90184 * 0.22991 * 9 8 7 20 20 H 1.08992 * 109.47030 * 299.99894 * 1 2 3 21 21 H 1.08996 * 109.46984 * 60.00186 * 1 2 3 22 22 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47030 * 240.00106 * 2 1 3 24 24 H 1.09001 * 109.47149 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47695 * 299.99792 * 3 2 1 26 26 H 1.09006 * 109.47379 * 60.00254 * 3 2 1 27 27 H 1.08998 * 109.47615 * 305.00058 * 4 2 1 28 28 H 1.08998 * 109.46765 * 184.99665 * 4 2 1 29 29 H 1.08999 * 109.47080 * 60.00074 * 5 4 2 30 30 H 1.08996 * 109.47420 * 299.99962 * 5 4 2 31 31 H 1.09004 * 109.47205 * 150.02402 * 10 9 8 32 32 H 1.08997 * 109.47395 * 30.02894 * 10 9 8 33 33 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 6 2.1380 -2.9060 2.4181 7 7 1.5000 -3.0432 3.5419 8 8 2.1754 -3.6646 4.3350 9 6 3.3436 -3.9932 3.7755 10 6 4.4635 -4.7653 4.4240 11 6 5.4031 -3.8071 5.1096 12 1 5.2085 -2.7452 5.0792 13 6 6.5113 -4.2861 5.7758 14 7 6.7453 -5.5796 5.8175 15 14 7.6755 -3.0984 6.6263 16 1 6.9347 -2.3366 7.6637 17 1 8.7791 -3.8593 7.2652 18 1 8.2379 -2.1552 5.6266 19 7 3.3315 -3.5107 2.5563 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6054 -0.2618 2.1370 28 1 3.1263 -0.6444 1.2952 29 1 2.0699 -2.6550 0.3003 30 1 0.5489 -2.2724 1.1420 31 1 5.0072 -5.3252 3.6630 32 1 4.0505 -5.4571 5.1581 33 1 7.5251 -5.9165 6.2858 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232620881.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = 28.860634 kcal Electronic energy + Delta-G solvation = -14901.066055 eV Core-core repulsion = 12349.945385 eV Total energy + Delta-G solvation = -2551.120670 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.70939 -37.24732 -35.07422 -33.87116 -32.19823 -30.23734 -28.35707 -27.29094 -24.69347 -24.00828 -22.30014 -20.36982 -19.98189 -17.41257 -16.63605 -16.24003 -15.38906 -14.87185 -14.63016 -14.11294 -13.52579 -13.27776 -12.68818 -12.47380 -12.38883 -12.13699 -12.01242 -11.50410 -11.29271 -11.15735 -11.00672 -10.77418 -10.71046 -10.59910 -10.51695 -10.24402 -10.07278 -9.81217 -8.89469 -8.60811 -6.24556 -4.30216 2.00457 3.01470 3.26232 3.29971 3.34097 3.83897 4.25041 4.33633 4.70246 4.79229 4.85161 4.90947 5.13475 5.35920 5.44390 5.53201 5.54052 5.60474 5.72564 5.82427 5.91694 5.98416 6.11297 6.15547 6.28510 6.34453 6.64599 6.74748 7.13103 7.20661 7.68692 7.92817 8.69706 9.00205 9.34481 10.85876 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034548 B = 0.005667 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.273237 B = 4939.936903 C = 5479.469017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.022 4.022 6 C 0.158 3.842 7 N -0.411 5.411 8 O 0.058 5.942 9 C 0.236 3.764 10 C 0.101 3.899 11 C -0.524 4.524 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.906 3.094 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.508 5.508 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 8.111 -9.170 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.061 4.061 6 C -0.115 4.115 7 N -0.125 5.125 8 O 0.004 5.996 9 C 0.018 3.982 10 C 0.062 3.938 11 C -0.563 4.563 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.733 3.267 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 N -0.242 5.242 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.300 8.349 -9.348 15.607 hybrid contribution 0.790 0.475 0.614 1.107 sum -8.510 8.824 -8.734 15.052 Atomic orbital electron populations 1.21916 0.95329 1.01917 1.01610 1.21103 0.95819 0.96252 0.98175 1.21832 1.01196 0.95861 1.01571 1.21620 1.01869 0.93229 0.98123 1.19901 1.00865 0.94189 0.91176 1.25748 0.89158 1.00195 0.96371 1.74487 1.19898 1.15917 1.02231 1.85242 1.24767 1.52007 1.37596 1.30146 0.88029 0.92929 0.87049 1.18194 0.85429 0.93927 0.96234 1.20757 1.08208 0.92983 1.34341 0.92150 1.24922 0.97452 0.95505 0.95784 1.69916 1.28352 1.12105 1.42199 0.86414 0.79998 0.80595 0.79690 1.19915 1.20907 1.19948 1.71951 1.18644 1.16479 1.17134 0.92647 0.92868 0.92391 0.90933 0.92533 0.92780 0.92726 0.91689 0.91091 0.89227 0.89657 0.91373 0.92421 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.95 37.16 0.33 -1.04 16 2 C -0.09 -0.96 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.38 9.19 37.15 0.34 -1.04 16 4 C -0.11 -1.43 4.66 -26.73 -0.12 -1.56 16 5 C -0.02 -0.32 5.60 -27.88 -0.16 -0.48 16 6 C 0.16 3.10 7.47 -156.36 -1.17 1.93 16 7 N -0.41 -8.59 12.16 30.90 0.38 -8.22 16 8 O 0.06 1.28 11.31 18.12 0.20 1.49 16 9 C 0.24 5.46 7.70 -13.06 -0.10 5.36 16 10 C 0.10 2.51 5.60 -29.04 -0.16 2.34 16 11 C -0.52 -14.21 9.09 -34.44 -0.31 -14.53 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 15 Si 0.91 20.84 29.54 -169.99 -5.02 15.81 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 N -0.51 -11.33 11.55 -9.87 -0.11 -11.45 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.08 6.57 -51.93 -0.34 0.74 16 31 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 284.55 15.07 4.29 4.29 Total: -1.00 -28.56 284.55 -6.12 -34.67 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.87 Total: -4.03 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.71 Total: -8.53 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 1.00 Total: -43.70 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.49 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.56 -6.12 -34.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232620881.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.532 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds