Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46827 * 2 1 4 4 C 1.52999 * 109.46793 * 119.99873 * 2 1 3 5 5 C 1.53004 * 109.47003 * 65.00188 * 4 2 1 6 6 C 1.50697 * 109.47057 * 179.97438 * 5 4 2 7 7 N 1.29949 * 126.29094 * 89.97757 * 6 5 4 8 8 O 1.21299 * 110.25253 * 180.02562 * 7 6 5 9 9 C 1.33638 * 109.81146 * 359.97438 * 8 7 6 10 10 C 1.50697 * 126.54638 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47266 * 270.02308 * 10 9 8 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47163 * 59.99902 * 15 13 11 17 17 H 1.48495 * 109.47159 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47290 * 299.99897 * 15 13 11 19 19 N 1.31126 * 106.90184 * 0.22991 * 9 8 7 20 20 H 1.08992 * 109.47030 * 299.99894 * 1 2 3 21 21 H 1.08996 * 109.46984 * 60.00186 * 1 2 3 22 22 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47030 * 240.00106 * 2 1 3 24 24 H 1.09001 * 109.47149 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47695 * 299.99792 * 3 2 1 26 26 H 1.09006 * 109.47379 * 60.00254 * 3 2 1 27 27 H 1.08998 * 109.47615 * 305.00058 * 4 2 1 28 28 H 1.08998 * 109.46765 * 184.99665 * 4 2 1 29 29 H 1.08999 * 109.47080 * 60.00074 * 5 4 2 30 30 H 1.08996 * 109.47420 * 299.99962 * 5 4 2 31 31 H 1.09004 * 109.47205 * 150.02402 * 10 9 8 32 32 H 1.08997 * 109.47395 * 30.02894 * 10 9 8 33 33 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 6 2.1380 -2.9060 2.4181 7 7 1.5000 -3.0432 3.5419 8 8 2.1754 -3.6646 4.3350 9 6 3.3436 -3.9932 3.7755 10 6 4.4635 -4.7653 4.4240 11 6 5.4031 -3.8071 5.1096 12 1 5.2085 -2.7452 5.0792 13 6 6.5113 -4.2861 5.7758 14 7 6.7453 -5.5796 5.8175 15 14 7.6755 -3.0984 6.6263 16 1 6.9347 -2.3366 7.6637 17 1 8.7791 -3.8593 7.2652 18 1 8.2379 -2.1552 5.6266 19 7 3.3315 -3.5107 2.5563 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6054 -0.2618 2.1370 28 1 3.1263 -0.6444 1.2952 29 1 2.0699 -2.6550 0.3003 30 1 0.5489 -2.2724 1.1420 31 1 5.0072 -5.3252 3.6630 32 1 4.0505 -5.4571 5.1581 33 1 7.5251 -5.9165 6.2858 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232620881.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = 11.803275 kcal Electronic energy + Delta-G solvation = -14901.805718 eV Core-core repulsion = 12349.945385 eV Total energy + Delta-G solvation = -2551.860332 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.40939 -38.28259 -36.67288 -35.74749 -33.96443 -31.55427 -30.24499 -28.00736 -26.03921 -25.89099 -23.94722 -21.93415 -20.90308 -19.22050 -18.40128 -18.14633 -16.81254 -16.25197 -15.86152 -15.32402 -14.87106 -14.52692 -14.44448 -14.07868 -13.63564 -13.29369 -13.18717 -12.97249 -12.83309 -12.61191 -12.43498 -12.31860 -12.13419 -11.94788 -11.84806 -11.57879 -11.53478 -11.47555 -10.67773 -10.65688 -8.31613 -6.45262 0.25359 1.33024 1.44523 1.45105 1.54127 2.02978 2.39279 2.81193 3.03180 3.20331 3.86354 3.90711 3.99587 4.25930 4.31685 4.53987 4.57991 4.75151 4.80533 4.87946 4.96461 5.01454 5.04224 5.08910 5.10880 5.13017 5.23582 5.30099 5.46527 5.50640 5.57569 5.87053 6.58699 7.23495 7.26629 8.79127 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034548 B = 0.005667 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.273237 B = 4939.936903 C = 5479.469017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.104 4.104 5 C -0.022 4.022 6 C 0.168 3.832 7 N -0.418 5.418 8 O 0.046 5.954 9 C 0.228 3.772 10 C 0.109 3.891 11 C -0.546 4.546 12 H 0.052 0.948 13 C 0.023 3.977 14 N -0.916 5.916 15 Si 0.970 3.030 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.271 1.271 19 N -0.521 5.521 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 9.371 -10.048 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.143 4.143 5 C -0.061 4.061 6 C -0.106 4.106 7 N -0.134 5.134 8 O -0.004 6.004 9 C 0.010 3.990 10 C 0.070 3.930 11 C -0.584 4.584 12 H 0.070 0.930 13 C -0.178 4.178 14 N -0.553 5.553 15 Si 0.794 3.206 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.196 1.196 19 N -0.256 5.256 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.652 9.599 -10.211 17.017 hybrid contribution 0.845 0.087 0.829 1.187 sum -8.807 9.686 -9.382 16.106 Atomic orbital electron populations 1.21916 0.94290 1.02276 1.02218 1.21079 0.96611 0.96321 0.96759 1.21838 1.00881 0.95507 1.02266 1.21585 1.00720 0.92578 0.99439 1.20229 1.02210 0.94381 0.89254 1.26637 0.87869 0.98730 0.97321 1.74483 1.19886 1.16394 1.02671 1.85229 1.24524 1.52496 1.38158 1.29755 0.88202 0.93511 0.87541 1.17907 0.85711 0.93689 0.95653 1.20981 1.09273 0.92925 1.35242 0.92988 1.25734 0.98793 0.97145 0.96129 1.69999 1.29031 1.13627 1.42688 0.85424 0.78035 0.78528 0.78660 1.19315 1.19810 1.19600 1.71958 1.20040 1.16864 1.16777 0.93099 0.91267 0.92154 0.89915 0.93098 0.91078 0.93067 0.92769 0.92883 0.87644 0.87432 0.92642 0.92905 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.95 71.98 0.64 -1.67 16 2 C -0.09 -1.59 2.92 -10.79 -0.03 -1.63 16 3 C -0.15 -2.47 9.19 71.98 0.66 -1.81 16 4 C -0.10 -2.57 4.66 30.60 0.14 -2.43 16 5 C -0.02 -0.59 5.60 29.85 0.17 -0.43 16 6 C 0.17 6.41 7.47 138.46 1.03 7.45 16 7 N -0.42 -17.27 12.16 -60.31 -0.73 -18.00 16 8 O 0.05 2.06 11.31 74.89 0.85 2.91 16 9 C 0.23 10.71 7.70 88.38 0.68 11.39 16 10 C 0.11 5.56 5.60 29.10 0.16 5.72 16 11 C -0.55 -29.97 9.09 25.60 0.23 -29.74 16 12 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 13 C 0.02 1.24 5.46 84.66 0.46 1.70 16 14 N -0.92 -51.22 13.29 21.45 0.28 -50.93 16 15 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 N -0.52 -23.22 11.55 -303.20 -3.50 -26.72 16 20 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.06 0.90 6.57 -2.39 -0.02 0.89 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.11 2.43 6.57 -2.39 -0.02 2.42 16 31 H 0.06 2.93 8.14 -2.38 -0.02 2.91 16 32 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -59.97 284.55 4.16 -55.81 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.08 Total: 4.03 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.16 Total: -11.45 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -3.95 Total: -95.66 kcal Atomic # 8 Polarization: 2.06 SS G_CDS: 0.85 Total: 2.91 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -59.97 4.16 -55.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232620881.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.616 kcal (2) G-P(sol) polarization free energy of solvation -59.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds