Wall clock time and date at job start Mon Mar 30 2020 03:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.50701 * 109.47423 * 120.00080 * 2 1 3 5 5 N 1.29944 * 126.28485 * 300.02635 * 4 2 1 6 6 O 1.21303 * 110.24956 * 179.97438 * 5 4 2 7 7 C 1.33645 * 109.81147 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.55447 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47084 * 270.02449 * 8 7 6 10 10 H 1.09000 * 109.47211 * 54.99065 * 9 8 7 11 11 C 1.53005 * 109.46471 * 294.99545 * 9 8 7 12 12 C 1.50701 * 109.47211 * 175.00039 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 N 1.31133 * 106.89427 * 0.22119 * 7 6 5 21 21 H 1.09005 * 109.46939 * 299.99749 * 1 2 3 22 22 H 1.08994 * 109.47659 * 59.99641 * 1 2 3 23 23 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46939 * 240.00251 * 2 1 3 25 25 H 1.09001 * 109.47300 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47302 * 300.00153 * 3 2 1 27 27 H 1.08995 * 109.47509 * 60.00178 * 3 2 1 28 28 H 1.08992 * 109.47460 * 150.02007 * 8 7 6 29 29 H 1.09007 * 109.46722 * 30.01753 * 8 7 6 30 30 H 1.09004 * 109.46658 * 179.97438 * 11 9 8 31 31 H 1.08995 * 109.47438 * 299.99599 * 11 9 8 32 32 H 1.08996 * 109.47069 * 60.00459 * 11 9 8 33 33 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7946 -0.3749 2.4631 6 8 2.3409 -1.1481 3.2215 7 6 2.9995 -2.0781 2.5234 8 6 3.8069 -3.2190 3.0868 9 6 5.2574 -2.7715 3.2786 10 1 5.2821 -1.8744 3.8971 11 6 5.8819 -2.4683 1.9151 12 6 6.0367 -3.8698 3.9550 13 1 5.5463 -4.7944 4.2218 14 6 7.3741 -3.6919 4.2387 15 7 7.9712 -2.5660 3.9141 16 14 8.3382 -5.0503 5.0841 17 1 8.9301 -5.9483 4.0601 18 1 9.4225 -4.4516 5.9034 19 1 7.4288 -5.8309 5.9608 20 7 2.8134 -1.8050 1.2544 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.7749 -4.0623 2.3970 29 1 3.3894 -3.5197 4.0478 30 1 6.9151 -2.1491 2.0517 31 1 5.8572 -3.3654 1.2965 32 1 5.3183 -1.6740 1.4259 33 1 8.9120 -2.4407 4.1140 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232755968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:56 Heat of formation + Delta-G solvation = 39.607564 kcal Electronic energy + Delta-G solvation = -15360.270404 eV Core-core repulsion = 12809.615756 eV Total energy + Delta-G solvation = -2550.654648 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.04221 -36.59791 -35.69498 -33.89808 -32.10832 -30.40791 -27.27970 -26.58895 -25.19625 -24.20682 -22.75220 -20.54944 -19.15853 -17.57848 -16.97889 -16.31872 -14.91021 -14.70435 -14.53490 -13.95599 -13.43548 -13.14573 -12.74361 -12.33375 -12.27359 -11.70004 -11.61080 -11.49589 -11.27960 -11.03878 -11.00763 -10.74235 -10.64859 -10.46785 -10.16956 -9.94038 -9.88045 -9.08873 -8.93264 -8.40592 -6.05255 -4.13854 1.68898 2.72796 3.28580 3.35371 3.37312 3.44858 3.95759 4.38484 4.46022 4.99827 5.01092 5.09535 5.26308 5.50477 5.54725 5.70846 5.78453 5.82298 6.01206 6.11793 6.17480 6.22095 6.26372 6.52464 6.57707 6.92566 7.14189 7.25747 7.64062 7.84918 8.05957 8.30437 8.68691 8.88645 9.51778 11.00910 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.061060 B = 0.005793 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.454425 B = 4832.047271 C = 5000.208407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.002 4.002 3 C -0.144 4.144 4 C 0.167 3.833 5 N -0.398 5.398 6 O 0.065 5.935 7 C 0.215 3.785 8 C -0.027 4.027 9 C 0.050 3.950 10 H 0.031 0.969 11 C -0.137 4.137 12 C -0.517 4.517 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 N -0.493 5.493 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.010 0.990 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 3.535 -5.790 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 C -0.202 4.202 4 C -0.106 4.106 5 N -0.109 5.109 6 O 0.009 5.991 7 C -0.004 4.004 8 C -0.066 4.066 9 C 0.030 3.970 10 H 0.049 0.951 11 C -0.195 4.195 12 C -0.556 4.556 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.227 5.227 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.108 4.250 -5.980 13.312 hybrid contribution 0.760 -0.781 0.532 1.212 sum -10.348 3.469 -5.449 12.198 Atomic orbital electron populations 1.21822 0.93328 1.02332 1.02564 1.19462 0.95989 0.95291 0.91425 1.21834 1.01728 0.94160 1.02508 1.25724 0.96983 0.93451 0.94417 1.74476 1.18927 1.14742 1.02794 1.85266 1.48232 1.30199 1.35387 1.29536 0.91856 0.93429 0.85586 1.20827 0.95853 0.89276 1.00615 1.18729 0.85916 0.97479 0.94839 0.95080 1.21819 1.03258 0.97862 0.96519 1.21029 0.94637 1.01049 1.38846 0.92129 1.24950 0.97701 0.95645 0.95545 1.69899 1.11344 1.24446 1.46840 0.86537 0.79710 0.81879 0.79528 1.20630 1.21239 1.19779 1.71960 1.17586 1.14563 1.18569 0.91985 0.91438 0.92437 0.88356 0.92159 0.91442 0.91974 0.88383 0.89207 0.89960 0.95147 0.97102 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.18 37.15 0.34 -1.21 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -1.70 9.18 37.16 0.34 -1.36 16 4 C 0.17 2.93 6.72 -156.38 -1.05 1.88 16 5 N -0.40 -7.41 12.16 30.90 0.38 -7.03 16 6 O 0.06 1.25 11.31 18.10 0.20 1.46 16 7 C 0.21 4.20 6.98 -13.06 -0.09 4.11 16 8 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 9 C 0.05 1.20 2.29 -91.77 -0.21 0.99 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.14 -3.33 8.78 37.16 0.33 -3.00 16 12 C -0.52 -13.47 8.56 -34.44 -0.29 -13.76 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 15 N -0.89 -24.94 11.33 55.43 0.63 -24.31 16 16 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 20 N -0.49 -9.61 10.86 -9.87 -0.11 -9.72 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 30 H 0.08 2.21 6.08 -51.93 -0.32 1.89 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.01 0.24 6.84 -51.93 -0.35 -0.12 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 280.67 15.07 4.23 4.23 Total: -1.00 -28.61 280.67 -5.74 -34.35 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.86 Total: -2.81 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -1.19 Total: -11.73 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.90 Total: -41.06 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.46 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.61 -5.74 -34.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232755968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.962 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds