Wall clock time and date at job start Mon Mar 30 2020 03:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.50701 * 109.47423 * 120.00080 * 2 1 3 5 5 N 1.29944 * 126.28485 * 300.02635 * 4 2 1 6 6 O 1.21303 * 110.24956 * 179.97438 * 5 4 2 7 7 C 1.33645 * 109.81147 * 0.02562 * 6 5 4 8 8 C 1.50696 * 126.55447 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47084 * 270.02449 * 8 7 6 10 10 H 1.09000 * 109.47211 * 54.99065 * 9 8 7 11 11 C 1.53005 * 109.46471 * 294.99545 * 9 8 7 12 12 C 1.50701 * 109.47211 * 175.00039 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 9 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 9 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 9 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 N 1.31133 * 106.89427 * 0.22119 * 7 6 5 21 21 H 1.09005 * 109.46939 * 299.99749 * 1 2 3 22 22 H 1.08994 * 109.47659 * 59.99641 * 1 2 3 23 23 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46939 * 240.00251 * 2 1 3 25 25 H 1.09001 * 109.47300 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47302 * 300.00153 * 3 2 1 27 27 H 1.08995 * 109.47509 * 60.00178 * 3 2 1 28 28 H 1.08992 * 109.47460 * 150.02007 * 8 7 6 29 29 H 1.09007 * 109.46722 * 30.01753 * 8 7 6 30 30 H 1.09004 * 109.46658 * 179.97438 * 11 9 8 31 31 H 1.08995 * 109.47438 * 299.99599 * 11 9 8 32 32 H 1.08996 * 109.47069 * 60.00459 * 11 9 8 33 33 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7946 -0.3749 2.4631 6 8 2.3409 -1.1481 3.2215 7 6 2.9995 -2.0781 2.5234 8 6 3.8069 -3.2190 3.0868 9 6 5.2574 -2.7715 3.2786 10 1 5.2821 -1.8744 3.8971 11 6 5.8819 -2.4683 1.9151 12 6 6.0367 -3.8698 3.9550 13 1 5.5463 -4.7944 4.2218 14 6 7.3741 -3.6919 4.2387 15 7 7.9712 -2.5660 3.9141 16 14 8.3382 -5.0503 5.0841 17 1 8.9301 -5.9483 4.0601 18 1 9.4225 -4.4516 5.9034 19 1 7.4288 -5.8309 5.9608 20 7 2.8134 -1.8050 1.2544 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.7749 -4.0623 2.3970 29 1 3.3894 -3.5197 4.0478 30 1 6.9151 -2.1491 2.0517 31 1 5.8572 -3.3654 1.2965 32 1 5.3183 -1.6740 1.4259 33 1 8.9120 -2.4407 4.1140 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232755968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:56 Heat of formation + Delta-G solvation = 22.206692 kcal Electronic energy + Delta-G solvation = -15361.024962 eV Core-core repulsion = 12809.615756 eV Total energy + Delta-G solvation = -2551.409206 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.50448 -37.83634 -37.43760 -35.38004 -33.81847 -32.08193 -28.31978 -28.16361 -27.22578 -25.49946 -24.23877 -22.19442 -20.62325 -19.10058 -18.44989 -18.22575 -16.57914 -16.09863 -15.99324 -15.27294 -14.87154 -14.44977 -14.40589 -13.93296 -13.43982 -13.20163 -13.03697 -12.84975 -12.66669 -12.59586 -12.46276 -12.21505 -12.14366 -12.10952 -11.85506 -11.70264 -11.63927 -10.93020 -10.67134 -10.44560 -8.08607 -6.23667 0.18972 1.29163 1.48245 1.49218 1.59097 1.92918 2.47032 2.69762 3.12733 3.21469 3.88864 4.01476 4.05117 4.33012 4.43570 4.51502 4.69087 4.69767 4.81309 4.83420 4.85905 4.97901 5.05012 5.05707 5.16377 5.22174 5.28698 5.33561 5.60801 5.83992 6.04103 6.28606 6.87240 7.20772 7.45925 8.97392 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.061060 B = 0.005793 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.454425 B = 4832.047271 C = 5000.208407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.170 3.830 5 N -0.409 5.409 6 O 0.052 5.948 7 C 0.209 3.791 8 C -0.015 4.015 9 C 0.048 3.952 10 H -0.001 1.001 11 C -0.123 4.123 12 C -0.529 4.529 13 H 0.072 0.928 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.961 3.039 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.261 1.261 20 N -0.508 5.508 21 H 0.053 0.947 22 H 0.099 0.901 23 H 0.053 0.947 24 H 0.108 0.892 25 H 0.043 0.957 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.014 0.986 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.916 2.938 -6.468 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.103 4.103 5 N -0.122 5.122 6 O 0.000 6.000 7 C -0.010 4.010 8 C -0.054 4.054 9 C 0.029 3.971 10 H 0.017 0.983 11 C -0.181 4.181 12 C -0.566 4.566 13 H 0.090 0.910 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.786 3.214 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.185 1.185 20 N -0.242 5.242 21 H 0.072 0.928 22 H 0.118 0.882 23 H 0.072 0.928 24 H 0.126 0.874 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.193 3.639 -6.641 14.353 hybrid contribution 1.061 -0.534 0.692 1.375 sum -11.132 3.105 -5.948 12.998 Atomic orbital electron populations 1.21798 0.91284 1.02480 1.03774 1.19813 0.97626 0.95605 0.89670 1.21828 1.00657 0.93463 1.03831 1.26569 0.95631 0.92668 0.95430 1.74472 1.19583 1.14877 1.03287 1.85250 1.48566 1.30373 1.35807 1.29473 0.92173 0.93500 0.85855 1.20618 0.93100 0.89508 1.02200 1.18614 0.88785 0.95913 0.93810 0.98330 1.21637 1.01524 0.97979 0.96929 1.21442 0.95011 1.01751 1.38443 0.90958 1.25786 0.98937 0.97719 0.96318 1.70048 1.11504 1.26410 1.48135 0.85510 0.78220 0.79119 0.78527 1.20228 1.21557 1.18513 1.71973 1.18154 1.15531 1.18536 0.92798 0.88189 0.92831 0.87413 0.93795 0.87970 0.92808 0.87058 0.87223 0.92825 0.94677 0.96743 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.18 71.98 0.66 -1.93 16 2 C -0.01 -0.17 3.39 -11.54 -0.04 -0.21 16 3 C -0.14 -3.02 9.18 71.98 0.66 -2.36 16 4 C 0.17 5.80 6.72 138.46 0.93 6.74 16 5 N -0.41 -15.04 12.16 -60.32 -0.73 -15.77 16 6 O 0.05 2.02 11.31 74.81 0.85 2.87 16 7 C 0.21 8.08 6.98 88.38 0.62 8.70 16 8 C -0.02 -0.59 5.26 29.85 0.16 -0.43 16 9 C 0.05 2.35 2.29 -11.54 -0.03 2.32 16 10 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 11 C -0.12 -6.03 8.78 71.98 0.63 -5.40 16 12 C -0.53 -27.25 8.56 25.60 0.22 -27.03 16 13 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 14 C 0.01 0.59 5.31 84.65 0.45 1.04 16 15 N -0.92 -52.67 11.33 21.45 0.24 -52.43 16 16 Si 0.96 41.91 29.54 68.60 2.03 43.93 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 20 N -0.51 -19.38 10.86 -303.20 -3.29 -22.67 16 21 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 22 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 29 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 30 H 0.05 2.94 6.08 -2.38 -0.01 2.92 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.01 0.65 6.84 -2.39 -0.02 0.63 16 33 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -61.02 280.67 4.43 -56.59 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.08 Total: 6.06 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.26 Total: -18.58 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -3.78 Total: -90.87 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -61.02 4.43 -56.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232755968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.799 kcal (2) G-P(sol) polarization free energy of solvation -61.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds