Wall clock time and date at job start Mon Mar 30 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.29941 * 126.28776 * 90.02413 * 5 4 3 7 7 O 1.21300 * 110.25544 * 179.97438 * 6 5 4 8 8 C 1.33649 * 109.80688 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.54822 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46920 * 269.97482 * 9 8 7 11 11 C 1.50706 * 109.46924 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99829 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00431 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99807 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47407 * 59.99623 * 15 13 11 17 17 H 1.48504 * 109.47202 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47035 * 299.99742 * 15 13 11 19 19 N 1.31134 * 106.89752 * 359.76531 * 8 7 6 20 20 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 21 21 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 22 22 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 24 24 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 26 26 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 27 27 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 29 29 H 1.08998 * 109.47122 * 29.97147 * 9 8 7 30 30 H 1.08997 * 109.46960 * 149.97511 * 9 8 7 31 31 H 1.09002 * 109.47391 * 299.99933 * 10 9 8 32 32 H 1.08997 * 109.47281 * 60.00225 * 10 9 8 33 33 H 0.96994 * 120.00186 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3285 3.5890 1.0471 7 8 4.7175 4.6879 0.7116 8 6 4.7467 4.7703 -0.6220 9 6 5.1690 5.9646 -1.4384 10 6 3.9518 6.8492 -1.7152 11 6 4.3740 8.0433 -2.5320 12 1 5.4072 8.1597 -2.8241 13 6 3.4414 8.9875 -2.9056 14 7 2.1833 8.8461 -2.5495 15 14 3.9646 10.4672 -3.9187 16 1 4.5437 10.0060 -5.2060 17 1 2.7834 11.3266 -4.1863 18 1 4.9828 11.2457 -3.1686 19 7 4.3420 3.6118 -1.0845 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6765 1.9564 -0.8900 26 1 1.6764 1.9564 0.8900 27 1 3.9329 0.9289 0.8909 28 1 3.9336 0.9287 -0.8892 29 1 5.9156 6.5360 -0.8868 30 1 5.5950 5.6267 -2.3830 31 1 3.2052 6.2778 -2.2667 32 1 3.5258 7.1871 -0.7705 33 1 1.5272 9.5102 -2.8126 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233002264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:49 Heat of formation + Delta-G solvation = 28.336446 kcal Electronic energy + Delta-G solvation = -14696.385723 eV Core-core repulsion = 12145.242323 eV Total energy + Delta-G solvation = -2551.143400 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.08133 -36.58295 -35.16782 -34.24630 -32.56796 -30.67515 -29.64808 -25.83473 -25.02329 -23.06447 -21.85533 -21.24558 -20.22202 -17.61012 -16.93366 -16.38537 -15.57758 -14.59416 -14.47807 -14.14117 -14.01289 -13.34826 -13.10691 -12.51482 -12.41910 -12.00559 -11.72738 -11.53636 -11.42902 -11.14306 -10.97718 -10.90660 -10.70484 -10.65988 -10.53072 -10.11796 -9.97921 -9.33917 -9.15064 -8.44834 -6.09306 -4.14266 1.63618 2.66311 3.30235 3.34510 3.35865 3.40998 3.98249 4.37648 4.43693 4.81449 4.85684 4.95523 5.24386 5.27201 5.38820 5.50071 5.59596 5.68502 5.78651 5.82250 6.00776 6.01795 6.13871 6.18486 6.22735 6.27946 6.46393 6.63417 7.48952 7.56295 7.85999 8.21533 8.63379 8.90812 9.50681 11.01947 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035013 B = 0.005039 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.521939 B = 5555.569053 C = 6100.547446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.117 4.117 4 C -0.024 4.024 5 C 0.164 3.836 6 N -0.401 5.401 7 O 0.066 5.934 8 C 0.213 3.787 9 C -0.028 4.028 10 C 0.028 3.972 11 C -0.527 4.527 12 H 0.061 0.939 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.496 5.496 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -13.819 4.415 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.155 4.155 4 C -0.063 4.063 5 C -0.109 4.109 6 N -0.112 5.112 7 O 0.010 5.990 8 C -0.006 4.006 9 C -0.068 4.068 10 C -0.010 4.010 11 C -0.565 4.565 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 N -0.230 5.230 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.840 -14.319 4.912 15.161 hybrid contribution 0.174 1.030 -0.570 1.190 sum 1.015 -13.289 4.342 14.017 Atomic orbital electron populations 1.21770 0.95673 1.01487 1.02152 1.21497 0.96112 0.96161 1.02086 1.21604 0.93218 0.97460 1.03247 1.19913 0.96164 0.86110 1.04075 1.25780 1.00725 1.00194 0.84172 1.74531 1.19101 0.93290 1.24295 1.85265 1.61196 1.26932 1.25564 1.29634 0.92846 0.96640 0.81479 1.20747 1.02389 0.87467 0.96153 1.19153 0.90776 0.93289 0.97810 1.21037 0.95085 1.06298 1.34087 0.92067 1.25007 0.94842 0.98308 0.96027 1.69956 1.01619 1.35732 1.45693 0.86565 0.78013 0.82272 0.80622 1.20078 1.21248 1.20072 1.71927 1.19582 1.02507 1.29012 0.92712 0.92496 0.92774 0.91713 0.91945 0.90999 0.91621 0.89586 0.88947 0.89120 0.88235 0.95541 0.95814 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.27 16 3 C -0.12 -1.40 5.20 -26.73 -0.14 -1.54 16 4 C -0.02 -0.30 5.84 -27.88 -0.16 -0.46 16 5 C 0.16 2.86 7.47 -156.37 -1.17 1.69 16 6 N -0.40 -7.48 12.16 30.90 0.38 -7.11 16 7 O 0.07 1.27 11.31 18.08 0.20 1.48 16 8 C 0.21 4.15 7.77 -13.05 -0.10 4.05 16 9 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 10 C 0.03 0.69 4.96 -27.88 -0.14 0.56 16 11 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 15 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 N -0.50 -9.65 11.55 -9.86 -0.11 -9.77 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 288.48 15.07 4.35 4.35 Total: -1.00 -29.93 288.48 -6.58 -36.51 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -5.04 Total: -4.32 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.07 Total: -11.55 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.00 Total: -42.34 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.20 Total: 1.48 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.93 -6.58 -36.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233002264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.846 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds