Wall clock time and date at job start Mon Mar 30 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.29941 * 126.28776 * 90.02413 * 5 4 3 7 7 O 1.21300 * 110.25544 * 179.97438 * 6 5 4 8 8 C 1.33649 * 109.80688 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.54822 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46920 * 269.97482 * 9 8 7 11 11 C 1.50706 * 109.46924 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99829 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00431 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99807 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47407 * 59.99623 * 15 13 11 17 17 H 1.48504 * 109.47202 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47035 * 299.99742 * 15 13 11 19 19 N 1.31134 * 106.89752 * 359.76531 * 8 7 6 20 20 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 21 21 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 22 22 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 24 24 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 26 26 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 27 27 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 28 28 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 29 29 H 1.08998 * 109.47122 * 29.97147 * 9 8 7 30 30 H 1.08997 * 109.46960 * 149.97511 * 9 8 7 31 31 H 1.09002 * 109.47391 * 299.99933 * 10 9 8 32 32 H 1.08997 * 109.47281 * 60.00225 * 10 9 8 33 33 H 0.96994 * 120.00186 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3285 3.5890 1.0471 7 8 4.7175 4.6879 0.7116 8 6 4.7467 4.7703 -0.6220 9 6 5.1690 5.9646 -1.4384 10 6 3.9518 6.8492 -1.7152 11 6 4.3740 8.0433 -2.5320 12 1 5.4072 8.1597 -2.8241 13 6 3.4414 8.9875 -2.9056 14 7 2.1833 8.8461 -2.5495 15 14 3.9646 10.4672 -3.9187 16 1 4.5437 10.0060 -5.2060 17 1 2.7834 11.3266 -4.1863 18 1 4.9828 11.2457 -3.1686 19 7 4.3420 3.6118 -1.0845 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6765 1.9564 -0.8900 26 1 1.6764 1.9564 0.8900 27 1 3.9329 0.9289 0.8909 28 1 3.9336 0.9287 -0.8892 29 1 5.9156 6.5360 -0.8868 30 1 5.5950 5.6267 -2.3830 31 1 3.2052 6.2778 -2.2667 32 1 3.5258 7.1871 -0.7705 33 1 1.5272 9.5102 -2.8126 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233002264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:49 Heat of formation + Delta-G solvation = 9.886799 kcal Electronic energy + Delta-G solvation = -14697.185760 eV Core-core repulsion = 12145.242323 eV Total energy + Delta-G solvation = -2551.943437 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.55113 -37.74337 -36.67757 -35.74644 -34.32800 -32.20093 -30.89528 -27.74278 -26.09197 -24.65707 -23.47821 -22.17893 -21.67086 -19.14527 -18.58299 -18.20691 -16.55110 -16.47340 -15.82654 -15.60821 -14.97524 -14.82164 -14.37121 -14.10421 -13.59177 -13.49072 -13.30835 -12.88143 -12.77638 -12.59889 -12.35915 -12.13584 -12.06972 -11.92538 -11.89727 -11.69572 -11.50964 -11.36504 -10.74108 -10.55867 -8.20210 -6.32715 0.12723 1.21853 1.46563 1.49447 1.57030 1.87340 2.44136 2.70505 3.07008 3.15157 3.86685 3.93677 4.01373 4.21861 4.37595 4.46043 4.52102 4.53162 4.67145 4.76700 4.85012 4.92182 4.96961 5.03511 5.05248 5.21273 5.32739 5.42539 5.43365 5.52386 5.77173 6.12789 6.82814 7.14788 7.37716 8.92129 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035013 B = 0.005039 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.521939 B = 5555.569053 C = 6100.547446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.113 4.113 4 C -0.024 4.024 5 C 0.168 3.832 6 N -0.413 5.413 7 O 0.055 5.945 8 C 0.207 3.793 9 C -0.014 4.014 10 C 0.034 3.966 11 C -0.541 4.541 12 H 0.079 0.921 13 C 0.001 3.999 14 N -0.936 5.936 15 Si 0.971 3.029 16 H -0.264 1.264 17 H -0.289 1.289 18 H -0.263 1.263 19 N -0.512 5.512 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.114 0.886 31 H -0.007 1.007 32 H -0.004 1.004 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -14.596 4.068 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.152 4.152 4 C -0.062 4.062 5 C -0.105 4.105 6 N -0.126 5.126 7 O 0.003 5.997 8 C -0.012 4.012 9 C -0.053 4.053 10 C -0.005 4.005 11 C -0.578 4.578 12 H 0.097 0.903 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.795 3.205 16 H -0.189 1.189 17 H -0.215 1.215 18 H -0.187 1.187 19 N -0.247 5.247 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.011 0.989 32 H 0.015 0.985 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.039 -15.092 4.572 15.901 hybrid contribution -0.233 1.202 -0.428 1.297 sum 1.806 -13.890 4.144 14.607 Atomic orbital electron populations 1.21793 0.95579 1.02390 1.01539 1.21471 0.96146 0.94122 1.03436 1.21569 0.92745 0.99249 1.01589 1.20210 0.96394 0.83575 1.06044 1.26607 0.99181 1.01553 0.83154 1.74525 1.19977 0.93309 1.24819 1.85246 1.61557 1.27466 1.25416 1.29570 0.93137 0.96825 0.81709 1.20518 1.00357 0.86997 0.97414 1.18944 0.92156 0.93610 0.95742 1.21547 0.95950 1.06622 1.33711 0.90286 1.26009 0.94745 1.01695 0.97306 1.70112 1.03032 1.37037 1.47395 0.85412 0.77656 0.78260 0.79198 1.18897 1.21474 1.18731 1.71945 1.19822 1.02903 1.30024 0.93127 0.93398 0.91095 0.90565 0.90328 0.93125 0.92877 0.87259 0.87252 0.86634 0.86764 0.98880 0.98537 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.91 71.98 0.71 -1.84 16 2 C -0.11 -1.87 5.93 30.60 0.18 -1.69 16 3 C -0.11 -2.59 5.20 30.60 0.16 -2.44 16 4 C -0.02 -0.56 5.84 29.85 0.17 -0.38 16 5 C 0.17 5.72 7.47 138.47 1.03 6.76 16 6 N -0.41 -15.23 12.16 -60.31 -0.73 -15.97 16 7 O 0.06 2.14 11.31 74.78 0.85 2.99 16 8 C 0.21 8.03 7.77 88.38 0.69 8.72 16 9 C -0.01 -0.54 5.78 29.85 0.17 -0.37 16 10 C 0.03 1.72 4.96 29.85 0.15 1.86 16 11 C -0.54 -28.86 9.11 25.60 0.23 -28.63 16 12 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 13 C 0.00 0.03 5.46 84.65 0.46 0.49 16 14 N -0.94 -56.16 13.29 21.45 0.28 -55.87 16 15 Si 0.97 42.50 29.54 68.60 2.03 44.52 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 19 N -0.51 -19.74 11.55 -303.18 -3.50 -23.25 16 20 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 30 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -64.61 288.48 3.96 -60.65 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.08 Total: 4.43 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 3.97 Total: -17.50 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -3.95 Total: -95.09 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.85 Total: 2.99 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -64.61 3.96 -60.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233002264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.534 kcal (2) G-P(sol) polarization free energy of solvation -64.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds