Wall clock time and date at job start Mon Mar 30 2020 02:43:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53006 * 109.46626 * 2 1
4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1
5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2
6 6 N 1.29941 * 126.28776 * 90.02413 * 5 4 3
7 7 O 1.21300 * 110.25544 * 179.97438 * 6 5 4
8 8 C 1.33649 * 109.80688 * 0.02562 * 7 6 5
9 9 C 1.50701 * 126.54822 * 179.97438 * 8 7 6
10 10 C 1.53000 * 109.46920 * 269.97482 * 9 8 7
11 11 C 1.50706 * 109.46924 * 180.02562 * 10 9 8
12 12 H 1.07997 * 119.99943 * 359.97438 * 11 10 9
13 13 C 1.37873 * 119.99829 * 180.02562 * 11 10 9
14 14 N 1.31516 * 120.00431 * 359.97438 * 13 11 10
15 15 Si 1.86803 * 119.99807 * 180.02562 * 13 11 10
16 16 H 1.48491 * 109.47407 * 59.99623 * 15 13 11
17 17 H 1.48504 * 109.47202 * 180.02562 * 15 13 11
18 18 H 1.48505 * 109.47035 * 299.99742 * 15 13 11
19 19 N 1.31134 * 106.89752 * 359.76531 * 8 7 6
20 20 H 1.08993 * 109.47839 * 299.99931 * 1 2 3
21 21 H 1.09000 * 109.47160 * 60.00369 * 1 2 3
22 22 H 1.09002 * 109.46719 * 180.02562 * 1 2 3
23 23 H 1.08993 * 109.47839 * 240.00069 * 2 1 3
24 24 H 1.09000 * 109.47160 * 119.99631 * 2 1 3
25 25 H 1.09000 * 109.47050 * 299.99699 * 3 2 1
26 26 H 1.09001 * 109.46801 * 59.99811 * 3 2 1
27 27 H 1.09000 * 109.47486 * 299.99829 * 4 3 2
28 28 H 1.09001 * 109.47362 * 60.00551 * 4 3 2
29 29 H 1.08998 * 109.47122 * 29.97147 * 9 8 7
30 30 H 1.08997 * 109.46960 * 149.97511 * 9 8 7
31 31 H 1.09002 * 109.47391 * 299.99933 * 10 9 8
32 32 H 1.08997 * 109.47281 * 60.00225 * 10 9 8
33 33 H 0.96994 * 120.00186 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5699 1.4426 0.0006
5 6 4.0722 2.8635 0.0000
6 7 4.3285 3.5890 1.0471
7 8 4.7175 4.6879 0.7116
8 6 4.7467 4.7703 -0.6220
9 6 5.1690 5.9646 -1.4384
10 6 3.9518 6.8492 -1.7152
11 6 4.3740 8.0433 -2.5320
12 1 5.4072 8.1597 -2.8241
13 6 3.4414 8.9875 -2.9056
14 7 2.1833 8.8461 -2.5495
15 14 3.9646 10.4672 -3.9187
16 1 4.5437 10.0060 -5.2060
17 1 2.7834 11.3266 -4.1863
18 1 4.9828 11.2457 -3.1686
19 7 4.3420 3.6118 -1.0845
20 1 -0.3634 0.5138 0.8899
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0277 0.0005
23 1 1.8934 -0.5138 -0.8899
24 1 1.8933 -0.5138 0.8900
25 1 1.6765 1.9564 -0.8900
26 1 1.6764 1.9564 0.8900
27 1 3.9329 0.9289 0.8909
28 1 3.9336 0.9287 -0.8892
29 1 5.9156 6.5360 -0.8868
30 1 5.5950 5.6267 -2.3830
31 1 3.2052 6.2778 -2.2667
32 1 3.5258 7.1871 -0.7705
33 1 1.5272 9.5102 -2.8126
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000233002264.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:43:49
Heat of formation + Delta-G solvation = 9.886799 kcal
Electronic energy + Delta-G solvation = -14697.185760 eV
Core-core repulsion = 12145.242323 eV
Total energy + Delta-G solvation = -2551.943437 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-46.55113 -37.74337 -36.67757 -35.74644 -34.32800 -32.20093 -30.89528 -27.74278
-26.09197 -24.65707 -23.47821 -22.17893 -21.67086 -19.14527 -18.58299 -18.20691
-16.55110 -16.47340 -15.82654 -15.60821 -14.97524 -14.82164 -14.37121 -14.10421
-13.59177 -13.49072 -13.30835 -12.88143 -12.77638 -12.59889 -12.35915 -12.13584
-12.06972 -11.92538 -11.89727 -11.69572 -11.50964 -11.36504 -10.74108 -10.55867
-8.20210 -6.32715 0.12723 1.21853 1.46563 1.49447 1.57030 1.87340
2.44136 2.70505 3.07008 3.15157 3.86685 3.93677 4.01373 4.21861
4.37595 4.46043 4.52102 4.53162 4.67145 4.76700 4.85012 4.92182
4.96961 5.03511 5.05248 5.21273 5.32739 5.42539 5.43365 5.52386
5.77173 6.12789 6.82814 7.14788 7.37716 8.92129
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.035013 B = 0.005039 C = 0.004589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 799.521939 B = 5555.569053 C = 6100.547446
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.114 4.114
3 C -0.113 4.113
4 C -0.024 4.024
5 C 0.168 3.832
6 N -0.413 5.413
7 O 0.055 5.945
8 C 0.207 3.793
9 C -0.014 4.014
10 C 0.034 3.966
11 C -0.541 4.541
12 H 0.079 0.921
13 C 0.001 3.999
14 N -0.936 5.936
15 Si 0.971 3.029
16 H -0.264 1.264
17 H -0.289 1.289
18 H -0.263 1.263
19 N -0.512 5.512
20 H 0.050 0.950
21 H 0.047 0.953
22 H 0.070 0.930
23 H 0.076 0.924
24 H 0.078 0.922
25 H 0.050 0.950
26 H 0.052 0.948
27 H 0.109 0.891
28 H 0.109 0.891
29 H 0.115 0.885
30 H 0.114 0.886
31 H -0.007 1.007
32 H -0.004 1.004
33 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.382 -14.596 4.068 15.338
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.152 4.152
3 C -0.152 4.152
4 C -0.062 4.062
5 C -0.105 4.105
6 N -0.126 5.126
7 O 0.003 5.997
8 C -0.012 4.012
9 C -0.053 4.053
10 C -0.005 4.005
11 C -0.578 4.578
12 H 0.097 0.903
13 C -0.198 4.198
14 N -0.576 5.576
15 Si 0.795 3.205
16 H -0.189 1.189
17 H -0.215 1.215
18 H -0.187 1.187
19 N -0.247 5.247
20 H 0.069 0.931
21 H 0.066 0.934
22 H 0.089 0.911
23 H 0.094 0.906
24 H 0.097 0.903
25 H 0.069 0.931
26 H 0.071 0.929
27 H 0.127 0.873
28 H 0.127 0.873
29 H 0.134 0.866
30 H 0.132 0.868
31 H 0.011 0.989
32 H 0.015 0.985
33 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 2.039 -15.092 4.572 15.901
hybrid contribution -0.233 1.202 -0.428 1.297
sum 1.806 -13.890 4.144 14.607
Atomic orbital electron populations
1.21793 0.95579 1.02390 1.01539 1.21471 0.96146 0.94122 1.03436
1.21569 0.92745 0.99249 1.01589 1.20210 0.96394 0.83575 1.06044
1.26607 0.99181 1.01553 0.83154 1.74525 1.19977 0.93309 1.24819
1.85246 1.61557 1.27466 1.25416 1.29570 0.93137 0.96825 0.81709
1.20518 1.00357 0.86997 0.97414 1.18944 0.92156 0.93610 0.95742
1.21547 0.95950 1.06622 1.33711 0.90286 1.26009 0.94745 1.01695
0.97306 1.70112 1.03032 1.37037 1.47395 0.85412 0.77656 0.78260
0.79198 1.18897 1.21474 1.18731 1.71945 1.19822 1.02903 1.30024
0.93127 0.93398 0.91095 0.90565 0.90328 0.93125 0.92877 0.87259
0.87252 0.86634 0.86764 0.98880 0.98537 0.92750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.55 9.91 71.98 0.71 -1.84 16
2 C -0.11 -1.87 5.93 30.60 0.18 -1.69 16
3 C -0.11 -2.59 5.20 30.60 0.16 -2.44 16
4 C -0.02 -0.56 5.84 29.85 0.17 -0.38 16
5 C 0.17 5.72 7.47 138.47 1.03 6.76 16
6 N -0.41 -15.23 12.16 -60.31 -0.73 -15.97 16
7 O 0.06 2.14 11.31 74.78 0.85 2.99 16
8 C 0.21 8.03 7.77 88.38 0.69 8.72 16
9 C -0.01 -0.54 5.78 29.85 0.17 -0.37 16
10 C 0.03 1.72 4.96 29.85 0.15 1.86 16
11 C -0.54 -28.86 9.11 25.60 0.23 -28.63 16
12 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16
13 C 0.00 0.03 5.46 84.65 0.46 0.49 16
14 N -0.94 -56.16 13.29 21.45 0.28 -55.87 16
15 Si 0.97 42.50 29.54 68.60 2.03 44.52 16
16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16
17 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16
18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16
19 N -0.51 -19.74 11.55 -303.18 -3.50 -23.25 16
20 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
21 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16
26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16
27 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16
28 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16
29 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16
30 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16
31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16
32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16
33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16
Total: -1.00 -64.61 288.48 3.96 -60.65
By element:
Atomic # 1 Polarization: 3.36 SS G_CDS: 1.08 Total: 4.43 kcal
Atomic # 6 Polarization: -21.47 SS G_CDS: 3.97 Total: -17.50 kcal
Atomic # 7 Polarization: -91.14 SS G_CDS: -3.95 Total: -95.09 kcal
Atomic # 8 Polarization: 2.14 SS G_CDS: 0.85 Total: 2.99 kcal
Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal
Total: -64.61 3.96 -60.65 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000233002264.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.534 kcal
(2) G-P(sol) polarization free energy of solvation -64.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.926 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.887 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds