Wall clock time and date at job start Mon Mar 30 2020 02:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 C 1.50696 * 109.46915 * 179.97438 * 3 2 1 5 5 N 1.29956 * 126.28956 * 89.97446 * 4 3 2 6 6 O 1.21297 * 110.25152 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.81173 * 359.97438 * 6 5 4 8 8 C 1.50695 * 126.55058 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47521 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.47004 * 300.02436 * 8 7 6 11 11 C 1.52996 * 109.47310 * 60.02217 * 8 7 6 12 12 C 1.50702 * 109.47159 * 174.99934 * 11 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 8 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 N 1.31128 * 106.90006 * 0.22611 * 7 6 5 21 21 H 1.09007 * 109.46426 * 60.00151 * 1 2 3 22 22 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47255 * 300.00888 * 1 2 3 24 24 H 1.09001 * 109.47373 * 239.99043 * 2 1 3 25 25 H 1.08997 * 109.46524 * 119.99692 * 2 1 3 26 26 H 1.08993 * 109.47351 * 59.99774 * 3 2 1 27 27 H 1.09001 * 109.46671 * 299.99544 * 3 2 1 28 28 H 1.09001 * 109.46930 * 299.99977 * 10 8 7 29 29 H 1.08999 * 109.46998 * 60.00229 * 10 8 7 30 30 H 1.09004 * 109.46896 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.47066 * 55.00137 * 11 8 7 32 32 H 1.08994 * 109.47405 * 294.99967 * 11 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3166 1.4417 -1.0465 6 8 5.4823 1.4424 -0.7109 7 6 5.5697 1.4441 0.6227 8 6 6.8363 1.4448 1.4390 9 1 6.5851 1.4458 2.4997 10 6 7.6557 0.1952 1.1102 11 6 7.6558 2.6937 1.1078 12 6 8.8606 2.7580 2.0108 13 1 9.0256 1.9851 2.7470 14 6 9.7557 3.8001 1.8929 15 7 9.5550 4.7410 0.9962 16 14 11.2532 3.8757 3.0070 17 1 12.0853 2.6631 2.8007 18 1 12.0511 5.0853 2.6823 19 1 10.8134 3.9391 4.4240 20 7 4.3426 1.4395 1.0851 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8898 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9562 -0.8901 28 1 7.0719 -0.6945 1.3462 29 1 7.9070 0.1942 0.0496 30 1 8.5717 0.1955 1.7010 31 1 7.0416 3.5816 1.2578 32 1 7.9824 2.6490 0.0689 33 1 10.1845 5.4744 0.9135 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233391873.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:57 Heat of formation + Delta-G solvation = 32.537105 kcal Electronic energy + Delta-G solvation = -15038.355813 eV Core-core repulsion = 12487.394567 eV Total energy + Delta-G solvation = -2550.961246 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.07962 -36.30836 -35.81218 -34.04661 -32.48777 -30.82684 -27.80048 -27.13296 -24.60893 -23.25100 -22.52121 -21.47799 -19.46985 -17.52226 -16.82164 -16.51219 -15.23436 -14.70277 -14.53495 -14.37398 -13.59914 -13.35057 -12.63212 -12.51225 -12.08979 -11.95960 -11.82757 -11.62361 -11.36510 -11.00116 -10.94654 -10.91114 -10.84959 -10.55617 -10.52471 -10.14689 -9.84843 -9.26847 -9.16068 -8.44308 -6.08380 -4.12544 1.65012 2.65077 3.30184 3.35145 3.36311 3.41730 3.95859 4.36162 4.44372 4.86257 4.89094 5.07230 5.27830 5.37282 5.50187 5.61300 5.63485 5.74252 5.81230 5.84939 6.02903 6.06222 6.11303 6.29673 6.38700 6.56978 6.68226 6.82713 7.48138 7.56516 7.86774 8.23039 8.63979 8.91574 9.51843 11.02914 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.062309 B = 0.005134 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.262094 B = 5452.455827 C = 5534.571905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.025 4.025 4 C 0.162 3.838 5 N -0.399 5.399 6 O 0.074 5.926 7 C 0.219 3.781 8 C -0.002 4.002 9 H 0.105 0.895 10 C -0.135 4.135 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.502 5.502 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.022 0.978 32 H 0.029 0.971 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.890 -8.233 -1.069 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.064 4.064 4 C -0.111 4.111 5 N -0.110 5.110 6 O 0.018 5.982 7 C 0.000 4.000 8 C -0.022 4.022 9 H 0.123 0.877 10 C -0.193 4.193 11 C -0.009 4.009 12 C -0.560 4.560 13 H 0.080 0.920 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 N -0.236 5.236 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.442 -8.063 -1.657 14.919 hybrid contribution 0.977 0.280 0.575 1.167 sum -11.465 -7.783 -1.083 13.900 Atomic orbital electron populations 1.21748 0.94949 1.01923 1.02059 1.21481 0.96149 0.95274 1.02807 1.19935 0.83375 0.98769 1.04301 1.25765 0.99958 1.01183 0.84242 1.74563 0.89739 1.22385 1.24317 1.85268 1.21767 1.65734 1.25404 1.29598 0.97259 0.91557 0.81634 1.20347 0.84710 1.00739 0.96402 0.87661 1.21781 1.00460 0.94280 1.02764 1.19237 0.94014 0.89360 0.98291 1.21025 1.07187 1.08961 1.18872 0.91990 1.25004 0.98207 0.95504 0.95490 1.69960 1.36947 1.12034 1.34040 0.86597 0.82577 0.77505 0.80982 1.20076 1.21296 1.20137 1.71922 0.99903 1.22523 1.29210 0.92531 0.92427 0.92369 0.91750 0.91322 0.88896 0.89469 0.94115 0.92324 0.89657 0.96015 0.95265 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 3 C -0.02 -0.31 5.84 -27.89 -0.16 -0.48 16 4 C 0.16 2.82 7.47 -156.36 -1.17 1.65 16 5 N -0.40 -7.63 12.16 30.90 0.38 -7.25 16 6 O 0.07 1.49 11.31 18.10 0.20 1.69 16 7 C 0.22 4.34 7.02 -13.06 -0.09 4.25 16 8 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 9 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 10 C -0.13 -2.33 8.99 37.16 0.33 -2.00 16 11 C 0.03 0.71 4.43 -27.88 -0.12 0.59 16 12 C -0.52 -13.73 8.41 -34.44 -0.29 -14.02 16 13 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 16 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 N -0.50 -9.68 11.55 -9.86 -0.11 -9.79 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -29.42 285.43 -6.10 -35.53 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.94 Total: -3.94 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.65 Total: -11.04 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 1.00 Total: -42.26 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.69 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.42 -6.10 -35.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233391873.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.062 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds