Wall clock time and date at job start Mon Mar 30 2020 02:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 C 1.50696 * 109.46915 * 179.97438 * 3 2 1 5 5 N 1.29956 * 126.28956 * 89.97446 * 4 3 2 6 6 O 1.21297 * 110.25152 * 179.97438 * 5 4 3 7 7 C 1.33645 * 109.81173 * 359.97438 * 6 5 4 8 8 C 1.50695 * 126.55058 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47521 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.47004 * 300.02436 * 8 7 6 11 11 C 1.52996 * 109.47310 * 60.02217 * 8 7 6 12 12 C 1.50702 * 109.47159 * 174.99934 * 11 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 8 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 N 1.31128 * 106.90006 * 0.22611 * 7 6 5 21 21 H 1.09007 * 109.46426 * 60.00151 * 1 2 3 22 22 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47255 * 300.00888 * 1 2 3 24 24 H 1.09001 * 109.47373 * 239.99043 * 2 1 3 25 25 H 1.08997 * 109.46524 * 119.99692 * 2 1 3 26 26 H 1.08993 * 109.47351 * 59.99774 * 3 2 1 27 27 H 1.09001 * 109.46671 * 299.99544 * 3 2 1 28 28 H 1.09001 * 109.46930 * 299.99977 * 10 8 7 29 29 H 1.08999 * 109.46998 * 60.00229 * 10 8 7 30 30 H 1.09004 * 109.46896 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.47066 * 55.00137 * 11 8 7 32 32 H 1.08994 * 109.47405 * 294.99967 * 11 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3166 1.4417 -1.0465 6 8 5.4823 1.4424 -0.7109 7 6 5.5697 1.4441 0.6227 8 6 6.8363 1.4448 1.4390 9 1 6.5851 1.4458 2.4997 10 6 7.6557 0.1952 1.1102 11 6 7.6558 2.6937 1.1078 12 6 8.8606 2.7580 2.0108 13 1 9.0256 1.9851 2.7470 14 6 9.7557 3.8001 1.8929 15 7 9.5550 4.7410 0.9962 16 14 11.2532 3.8757 3.0070 17 1 12.0853 2.6631 2.8007 18 1 12.0511 5.0853 2.6823 19 1 10.8134 3.9391 4.4240 20 7 4.3426 1.4395 1.0851 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8898 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9562 -0.8901 28 1 7.0719 -0.6945 1.3462 29 1 7.9070 0.1942 0.0496 30 1 8.5717 0.1955 1.7010 31 1 7.0416 3.5816 1.2578 32 1 7.9824 2.6490 0.0689 33 1 10.1845 5.4744 0.9135 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233391873.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:57 Heat of formation + Delta-G solvation = 14.298729 kcal Electronic energy + Delta-G solvation = -15039.146688 eV Core-core repulsion = 12487.394567 eV Total energy + Delta-G solvation = -2551.752121 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.56860 -37.61415 -37.43563 -35.31157 -34.35128 -32.35102 -29.02212 -28.78427 -26.28715 -24.73276 -24.05774 -22.59067 -20.97958 -19.04309 -18.63632 -18.17704 -16.53597 -16.40951 -15.79473 -15.74982 -15.00266 -14.48860 -14.41200 -13.89070 -13.62459 -13.17182 -12.99860 -12.88425 -12.81772 -12.63102 -12.52408 -12.29002 -12.17295 -12.10780 -11.87205 -11.67106 -11.51956 -11.27223 -10.76564 -10.53696 -8.17541 -6.28594 0.11906 1.20252 1.47469 1.49887 1.57268 1.86531 2.44248 2.65833 3.05123 3.17847 3.86243 3.99960 4.06579 4.17668 4.26623 4.29797 4.59854 4.63563 4.68981 4.85036 4.88428 4.89676 5.03564 5.07707 5.16666 5.21407 5.35734 5.38685 5.40427 5.57861 5.79729 6.16300 6.85285 7.12984 7.40848 8.94886 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.062309 B = 0.005134 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.262094 B = 5452.455827 C = 5534.571905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.027 4.027 4 C 0.169 3.831 5 N -0.414 5.414 6 O 0.054 5.946 7 C 0.212 3.788 8 C 0.008 3.992 9 H 0.113 0.887 10 C -0.128 4.128 11 C 0.037 3.963 12 C -0.530 4.530 13 H 0.079 0.921 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.262 1.262 18 H -0.291 1.291 19 H -0.266 1.266 20 N -0.511 5.511 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.085 0.915 31 H -0.013 1.013 32 H 0.004 0.996 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -9.468 -0.031 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.066 4.066 4 C -0.104 4.104 5 N -0.128 5.128 6 O 0.003 5.997 7 C -0.008 4.008 8 C -0.012 4.012 9 H 0.131 0.869 10 C -0.186 4.186 11 C -0.002 4.002 12 C -0.568 4.568 13 H 0.097 0.903 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.217 1.217 19 H -0.191 1.191 20 N -0.245 5.245 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.005 0.995 32 H 0.022 0.978 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.097 -9.321 -0.615 16.087 hybrid contribution 1.087 0.673 0.225 1.298 sum -12.009 -8.648 -0.390 14.804 Atomic orbital electron populations 1.21717 0.92602 1.02909 1.02895 1.21448 0.98054 0.93596 1.02063 1.20269 0.80123 1.00482 1.05705 1.26637 1.01748 0.98851 0.83192 1.74564 0.89541 1.23736 1.25003 1.85251 1.22547 1.66379 1.25513 1.29554 0.97531 0.91942 0.81737 1.20150 0.84594 0.99656 0.96809 0.86888 1.21735 1.00376 0.93940 1.02558 1.19031 0.93991 0.90396 0.96733 1.21483 1.07308 1.09094 1.18924 0.90263 1.25969 1.01579 0.95176 0.96969 1.70115 1.38325 1.12948 1.36188 0.85469 0.78644 0.77676 0.79083 1.18624 1.21653 1.19095 1.71941 0.99872 1.22730 1.29953 0.91672 0.91408 0.91579 0.92475 0.92133 0.87572 0.87931 0.91296 0.92684 0.89622 0.99497 0.97762 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 3 C -0.03 -0.63 5.84 29.85 0.17 -0.46 16 4 C 0.17 5.76 7.47 138.46 1.03 6.79 16 5 N -0.41 -15.78 12.16 -60.29 -0.73 -16.51 16 6 O 0.05 2.22 11.31 74.82 0.85 3.07 16 7 C 0.21 8.41 7.02 88.38 0.62 9.03 16 8 C 0.01 0.33 2.81 -11.54 -0.03 0.29 16 9 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 10 C -0.13 -4.28 8.99 71.98 0.65 -3.63 16 11 C 0.04 1.85 4.43 29.85 0.13 1.98 16 12 C -0.53 -27.87 8.41 25.60 0.22 -27.66 16 13 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 14 C 0.00 0.06 5.46 84.66 0.46 0.52 16 15 N -0.94 -55.74 13.29 21.45 0.28 -55.46 16 16 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 N -0.51 -19.37 11.55 -303.17 -3.50 -22.87 16 21 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.09 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 2.85 6.95 -2.38 -0.02 2.83 16 31 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 32 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.26 14.85 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -63.43 285.43 4.15 -59.28 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.08 Total: 4.63 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.15 Total: -16.41 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -3.95 Total: -94.84 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -63.43 4.15 -59.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233391873.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.576 kcal (2) G-P(sol) polarization free energy of solvation -63.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds