Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46856 * 2 1 4 4 C 1.50698 * 109.47070 * 179.97438 * 3 2 1 5 5 N 1.29946 * 126.29198 * 270.02327 * 4 3 2 6 6 O 1.21298 * 110.25505 * 179.68388 * 5 4 3 7 7 C 1.33643 * 109.80846 * 0.46943 * 6 5 4 8 8 C 1.50699 * 126.54930 * 179.80105 * 7 6 5 9 9 H 1.09004 * 109.46963 * 179.68504 * 8 7 6 10 10 C 1.53004 * 109.47110 * 59.69075 * 8 7 6 11 11 C 1.52997 * 109.47337 * 299.68812 * 8 7 6 12 12 C 1.50701 * 109.47212 * 184.99952 * 11 8 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 8 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 N 1.31130 * 106.89670 * 359.53964 * 7 6 5 21 21 H 1.09000 * 109.47159 * 299.99606 * 1 2 3 22 22 H 1.08998 * 109.47001 * 60.00085 * 1 2 3 23 23 H 1.09003 * 109.46823 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47032 * 239.99782 * 2 1 3 25 25 H 1.09003 * 109.46798 * 119.99211 * 2 1 3 26 26 H 1.09001 * 109.47224 * 59.99529 * 3 2 1 27 27 H 1.08998 * 109.47246 * 299.99765 * 3 2 1 28 28 H 1.09000 * 109.47403 * 59.99699 * 10 8 7 29 29 H 1.09001 * 109.46917 * 180.02562 * 10 8 7 30 30 H 1.09004 * 109.46741 * 299.99564 * 10 8 7 31 31 H 1.09002 * 109.47153 * 64.99954 * 11 8 7 32 32 H 1.09001 * 109.46832 * 305.00144 * 11 8 7 33 33 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3157 1.4423 1.0483 6 8 5.4816 1.4362 0.7137 7 6 5.5701 1.4421 -0.6197 8 6 6.8375 1.4418 -1.4350 9 1 6.5871 1.4419 -2.4959 10 6 7.6563 0.1922 -1.1045 11 6 7.6570 2.6907 -1.1043 12 6 8.8626 2.7539 -2.0063 13 1 9.0276 1.9808 -2.7421 14 6 9.7544 3.7993 -1.8928 15 7 9.5532 4.7410 -0.9971 16 14 11.2484 3.8780 -3.0113 17 1 11.2448 2.7075 -3.9252 18 1 11.2035 5.1292 -3.8100 19 1 12.4844 3.8602 -2.1883 20 7 4.3434 1.4424 -1.0831 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5137 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 7.0725 -0.6976 -1.3401 29 1 8.5732 0.1923 -1.6938 30 1 7.9067 0.1922 -0.0436 31 1 7.9827 2.6470 -0.0650 32 1 7.0431 3.5786 -1.2556 33 1 10.1809 5.4762 -0.9170 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233392259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = 32.474340 kcal Electronic energy + Delta-G solvation = -15038.557929 eV Core-core repulsion = 12487.593961 eV Total energy + Delta-G solvation = -2550.963968 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.08136 -36.30860 -35.81299 -34.04771 -32.49099 -30.82805 -27.80082 -27.13502 -24.61021 -23.25335 -22.52340 -21.47779 -19.47169 -17.52395 -16.82326 -16.51502 -15.23545 -14.70247 -14.53225 -14.37829 -13.60011 -13.35022 -12.63079 -12.51488 -12.09115 -11.96533 -11.83036 -11.62540 -11.36655 -11.01373 -10.93198 -10.91394 -10.85659 -10.54975 -10.51407 -10.15495 -9.85347 -9.24453 -9.15922 -8.45332 -6.08907 -4.12871 1.64975 2.65101 3.27852 3.35434 3.38312 3.41892 3.95845 4.36034 4.44232 4.86201 4.89055 5.07191 5.27577 5.37253 5.50147 5.61238 5.63485 5.74234 5.81154 5.84914 6.02876 6.06196 6.11254 6.29668 6.38688 6.56925 6.68157 6.82802 7.48286 7.56294 7.86727 8.22791 8.63963 8.91778 9.51696 11.02483 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.062174 B = 0.005135 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.239395 B = 5451.619486 C = 5532.725765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.025 4.025 4 C 0.162 3.838 5 N -0.399 5.399 6 O 0.074 5.926 7 C 0.219 3.781 8 C -0.001 4.001 9 H 0.105 0.895 10 C -0.135 4.135 11 C 0.028 3.972 12 C -0.521 4.521 13 H 0.063 0.937 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.283 1.283 20 N -0.502 5.502 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.022 0.978 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -8.274 1.058 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.064 4.064 4 C -0.111 4.111 5 N -0.110 5.110 6 O 0.018 5.982 7 C -0.001 4.001 8 C -0.022 4.022 9 H 0.123 0.877 10 C -0.193 4.193 11 C -0.010 4.010 12 C -0.559 4.559 13 H 0.081 0.919 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.236 5.236 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.461 -8.104 1.639 14.955 hybrid contribution 0.974 0.305 -0.564 1.166 sum -11.487 -7.798 1.075 13.926 Atomic orbital electron populations 1.21749 0.94947 1.01925 1.02059 1.21481 0.96150 0.95271 1.02806 1.19935 0.83375 0.98769 1.04301 1.25761 0.99960 1.01183 0.84241 1.74558 0.89737 1.22385 1.24326 1.85267 1.21747 1.65734 1.25428 1.29601 0.97272 0.91558 0.81621 1.20347 0.84687 1.00738 0.96417 0.87664 1.21781 1.00473 0.94281 1.02762 1.19250 0.94039 0.89368 0.98319 1.21099 1.07185 1.08746 1.18852 0.91878 1.25008 0.98225 0.95506 0.95519 1.69978 1.36901 1.11941 1.34152 0.86486 0.82583 0.78078 0.80571 1.19560 1.21004 1.20955 1.71920 0.99887 1.22521 1.29232 0.92535 0.92363 0.92427 0.91319 0.91750 0.89476 0.88896 0.94108 0.89646 0.92325 0.95258 0.96005 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 3 C -0.02 -0.31 5.84 -27.89 -0.16 -0.48 16 4 C 0.16 2.82 7.47 -156.37 -1.17 1.65 16 5 N -0.40 -7.63 12.16 30.90 0.38 -7.25 16 6 O 0.07 1.49 11.31 18.10 0.20 1.69 16 7 C 0.22 4.33 7.02 -13.06 -0.09 4.24 16 8 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 9 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 10 C -0.13 -2.33 8.99 37.16 0.33 -2.00 16 11 C 0.03 0.69 4.43 -27.88 -0.12 0.57 16 12 C -0.52 -13.68 8.41 -34.44 -0.29 -13.96 16 13 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 16 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 N -0.50 -9.68 11.55 -9.87 -0.11 -9.79 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -29.47 285.43 -6.10 -35.57 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.94 Total: -4.01 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.65 Total: -11.02 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 1.00 Total: -42.25 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.69 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.47 -6.10 -35.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233392259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.048 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds